Clone SD08668 Report

Search the DGRC for SD08668

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:86
Well:68
Vector:pOT2
Associated Gene/TranscriptPect-RA
Protein status:SD08668.pep: wuzgold
Preliminary Size:1577
Sequenced Size:1461

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5547 2001-01-01 Release 2 assignment
CG5547 2001-09-19 Blastp of sequenced clone
Pect 2008-04-29 Release 5.5 accounting
Pect 2008-08-15 Release 5.9 accounting
Pect 2008-12-18 5.12 accounting

Clone Sequence Records

SD08668.complete Sequence

1461 bp (1461 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060483

> SD08668.complete
CGCCCGCGAAATGAATCCAAATGCCGAATGCCCAATGACCAACCTGCAAT
CAAAATATCCAAATCCGAATCCAAATCGAAATCAAATCCTAAACGTAAAT
TTTTGCTCTTAAATACACACTTTTGCTCATTTGTCTGCGTTGCTTTACAA
TACAAAACAAACAAAAAAAGTGTCAATTTTAAAACGTCAAATAAAATCCC
ATCCAGGTTCTTCGAACATGGGTCAAGATTCGGCAGCCAAAAGTCCGTGG
ACCGGTTGTAGTCAGTTCTTGCCGACTACCCAAAAGATCATACAGTTCAG
TGATGGAAAGTCACCGAATCCCGGCGATAAGATTGTTTATGTGGCTGGCG
CCTTCGATCTCTTCCATGTGGGTCACCTGGACTTTCTGGAAAAGGCTAAG
AAACTGGGTGACTATCTGATTGTTGGCCTGCACACAGATCCCGTGGTGAA
CTCCTACAAGGGCAGCAACTATCCCATTATGAATCTGCACGAGCGCGTGC
TCAGTGTTTTGGCCTGCAAGTTTGTCAATGAGGTAGTAATCGGAGCTCCC
TACTGTGTCACTGAAGAGCTGCTTGAGCACTTCAAAATCGATGTTGTCTG
TCATGGACGCACACCCATTGCGCTTGAGAATGGCAAGATCGATCCATATG
CCGTTCCCAAGACGCGAGCCATCTTTGAGCTGATCGATTCCGGCAACGAG
ATGACCACGGAGCGCATCGTGGAGCGCATCATCTCGCACCGACTGGAATA
TGAGCGTCGCAATCAGGCCAAAGAAAAGAAGGAAATCGAAGCCTTTGAGG
CACTTCAACGCCAAAAACAGACCCAAAAGGCCGGCTAGCCGGAACCAGAT
TCCGACCTCTCACACTAGACGGATGTTTTTTATTTTCTAGTTGCGTTCTT
TTAGTTTGTTTTATTTAGTTTGTCTTGTTTAGTATGTCGTCCCCTGATGA
TGGCGCTTTAATTTTTTGTTGCGTAAAAAGCGAAGCGACGCTGCCTGAGG
ATTCAGCGCACCGCTCTCTCGATTTCTAGTACAATTTTAGAATATCTGCA
CATGCGCCTTAATGATATAAGGTTATACACATAATTATATATTTCTAACA
CATTAACGTAGAATATTTAAAATCTAAATTTTATGTATGTAAGCTCAAAA
TTTGTAAATTCCCTTTAAAGTACGATGTAAGTGTGAGGAACAACAAAATT
GTACGAATAGCATGTTATCCAAACTGTTGCCGAATTGAAAAGCCTTGTAC
GACTTGTATGTATATATATTCAGCAACGGAAGTAGGATGCCTGGATCAGG
AAGTAGCTGCTTTTATCAAATGTAATCTCTGATACTTTGTCCTAATTTAT
TAATGCATATAGTAAGTGCGAGTTCAAGTTTTATGTTTCCTTGTTTAATC
TTAGACTTAAATACATGGCCAAAAATATTGCGAATTCCAAAAAAAAAAAA
AAAAAAAAAAA

SD08668.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:15:44
Subject Length Description Subject Range Query Range Score Percent Strand
Pect-RA 1550 Pect-RA 93..1544 1..1452 7245 99.9 Plus
Pect-RB 2318 Pect-RB 1024..2312 164..1452 6415 99.8 Plus
Pect.a 1346 Pect.a 95..1340 207..1452 6230 100 Plus
Pect.a 1346 Pect.a 1..96 1..96 480 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 13208590..13209510 519..1438 4540 99.8 Plus
chr2L 23010047 chr2L 13207947..13208282 1..336 1665 99.7 Plus
chr2L 23010047 chr2L 13208341..13208526 335..520 930 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:52:23 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:53:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13209909..13210842 519..1452 4670 100 Plus
2L 23513712 2L 13209266..13209601 1..336 1665 99.7 Plus
2L 23513712 2L 13209660..13209845 335..520 930 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13209909..13210842 519..1452 4670 100 Plus
2L 23513712 2L 13209266..13209601 1..336 1665 99.7 Plus
2L 23513712 2L 13209660..13209845 335..520 930 100 Plus
Blast to na_te.dros performed 2019-03-16 13:53:55
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker4 7359 Stalker4 STALKER4 7359bp 6372..6627 1136..880 114 55.2 Minus
Stalker 7256 Stalker STALKER 7256bp 6266..6521 1136..880 114 55.2 Minus

SD08668.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:54:57 Download gff for SD08668.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 13207947..13208280 1..334 99 -> Plus
chr2L 13208341..13208526 335..520 100 -> Plus
chr2L 13208592..13209510 521..1438 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:04:38 Download gff for SD08668.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RB 508..1182 164..838 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:57:20 Download gff for SD08668.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RB 508..1182 164..838 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:23:21 Download gff for SD08668.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RB 508..1182 164..838 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:26:34 Download gff for SD08668.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RB 508..1182 164..838 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:25:49 Download gff for SD08668.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RB 508..1182 164..838 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:43:36 Download gff for SD08668.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RA 1..1438 1..1438 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:57:20 Download gff for SD08668.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RA 1..1438 1..1438 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:21 Download gff for SD08668.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RB 936..2210 164..1438 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:26:34 Download gff for SD08668.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RA 1..1438 1..1438 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:49 Download gff for SD08668.complete
Subject Subject Range Query Range Percent Splice Strand
Pect-RB 936..2210 164..1438 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:54:57 Download gff for SD08668.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13209660..13209845 335..520 100 -> Plus
2L 13209266..13209599 1..334 99 -> Plus
2L 13209911..13210828 521..1438 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:54:57 Download gff for SD08668.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13209660..13209845 335..520 100 -> Plus
2L 13209266..13209599 1..334 99 -> Plus
2L 13209911..13210828 521..1438 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:54:57 Download gff for SD08668.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13209660..13209845 335..520 100 -> Plus
2L 13209266..13209599 1..334 99 -> Plus
2L 13209911..13210828 521..1438 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:21 Download gff for SD08668.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13209266..13209599 1..334 99 -> Plus
arm_2L 13209660..13209845 335..520 100 -> Plus
arm_2L 13209911..13210828 521..1438 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:03:45 Download gff for SD08668.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13209660..13209845 335..520 100 -> Plus
2L 13209266..13209599 1..334 99 -> Plus
2L 13209911..13210828 521..1438 100   Plus

SD08668.pep Sequence

Translation from 217 to 837

> SD08668.pep
MGQDSAAKSPWTGCSQFLPTTQKIIQFSDGKSPNPGDKIVYVAGAFDLFH
VGHLDFLEKAKKLGDYLIVGLHTDPVVNSYKGSNYPIMNLHERVLSVLAC
KFVNEVVIGAPYCVTEELLEHFKIDVVCHGRTPIALENGKIDPYAVPKTR
AIFELIDSGNEMTTERIVERIISHRLEYERRNQAKEKKEIEAFEALQRQK
QTQKAG*

SD08668.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15564-PA 393 GF15564-PA 188..393 1..206 1081 97.1 Plus
Dana\GF24774-PA 389 GF24774-PA 61..224 21..185 225 36.9 Plus
Dana\GF24772-PA 526 GF24772-PA 218..362 40..185 220 37.2 Plus
Dana\GF15564-PA 393 GF15564-PA 18..184 28..192 214 32.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23821-PA 384 GG23821-PA 179..384 1..206 1097 98.5 Plus
Dere\GG14797-PA 521 GG14797-PA 210..354 40..185 219 37.2 Plus
Dere\GG23821-PA 384 GG23821-PA 23..175 37..192 210 33.3 Plus
Dere\GG14798-PA 368 GG14798-PA 68..212 40..185 210 37.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11091-PA 385 GH11091-PA 180..385 1..206 1076 95.1 Plus
Dgri\GH14503-PA 571 GH14503-PA 262..406 40..185 210 35.8 Plus
Dgri\GH11091-PA 385 GH11091-PA 27..176 40..192 205 33.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
Pect-PD 381 CG5547-PD 176..381 1..206 1077 100 Plus
Pect-PB 393 CG5547-PB 188..393 1..206 1077 100 Plus
Pect-PC 374 CG5547-PC 171..374 3..206 1063 99.5 Plus
Pect-PE 371 CG5547-PE 169..371 4..206 1048 98.5 Plus
Pcyt2-PA 381 CG18330-PA 81..225 40..185 210 37.8 Plus
Pect-PE 371 CG5547-PE 20..172 37..192 209 33.3 Plus
Pcyt1-PF 526 CG1049-PF 208..352 40..185 208 37.2 Plus
Pcyt1-PE 526 CG1049-PE 208..352 40..185 208 37.2 Plus
Pcyt1-PC 526 CG1049-PC 208..352 40..185 208 37.2 Plus
Pcyt1-PB 526 CG1049-PB 208..352 40..185 208 37.2 Plus
Pcyt1-PD 526 CG1049-PD 208..352 40..185 208 37.2 Plus
Pcyt1-PA 526 CG1049-PA 208..352 40..185 208 37.2 Plus
Pect-PB 393 CG5547-PB 20..178 37..199 207 33.1 Plus
Pect-PD 381 CG5547-PD 20..171 37..191 205 32.9 Plus
Pect-PC 374 CG5547-PC 20..171 37..191 205 32.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:24:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17607-PA 394 GI17607-PA 189..394 1..206 1085 96.6 Plus
Dmoj\GI13279-PA 575 GI13279-PA 262..406 40..185 215 37.2 Plus
Dmoj\GI17607-PA 394 GI17607-PA 36..185 40..192 210 33.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26305-PA 395 GL26305-PA 190..395 1..206 1088 97.6 Plus
Dper\GL24617-PA 357 GL24617-PA 67..212 40..185 218 37.2 Plus
Dper\GL24809-PA 417 GL24809-PA 112..256 40..185 217 37.8 Plus
Dper\GL26305-PA 395 GL26305-PA 27..186 31..192 212 32.5 Plus
Dper\GL24808-PA 531 GL24808-PA 219..363 40..185 210 35.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28810-PA 395 GA28810-PA 190..395 1..206 1088 97.6 Plus
Dpse\GA23364-PA 391 GA23364-PA 103..248 40..185 219 37.2 Plus
Dpse\GA23519-PA 417 GA23519-PA 112..256 40..185 217 37.8 Plus
Dpse\GA28810-PA 395 GA28810-PA 27..186 31..192 212 32.5 Plus
Dpse\GA10348-PA 531 GA10348-PA 219..363 40..185 210 35.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10235-PA 381 GM10235-PA 176..381 1..206 960 90.4 Plus
Dsec\GM14419-PA 524 GM14419-PA 208..352 40..185 221 37.2 Plus
Dsec\GM14420-PA 380 GM14420-PA 80..224 40..185 214 37.8 Plus
Dsec\GM10235-PA 381 GM10235-PA 20..186 37..206 209 30.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23872-PA 381 GD23872-PA 176..381 1..206 1110 100 Plus
Dsim\GD13623-PA 524 GD13623-PA 208..352 40..185 220 37.2 Plus
Dsim\GD13624-PA 381 GD13624-PA 81..225 40..185 213 37.8 Plus
Dsim\GD23872-PA 381 GD23872-PA 20..172 37..192 206 32.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17952-PA 415 GJ17952-PA 210..415 1..206 1092 96.6 Plus
Dvir\GJ14914-PA 351 GJ14914-PA 146..351 1..206 1086 96.6 Plus
Dvir\GJ14912-PA 167 GJ14912-PA 1..167 40..206 865 96.4 Plus
Dvir\GJ12047-PA 368 GJ12047-PA 59..203 40..185 211 36.5 Plus
Dvir\GJ17952-PA 415 GJ17952-PA 50..202 46..203 205 33.5 Plus
Dvir\GJ14914-PA 351 GJ14914-PA 1..142 48..192 188 33.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14544-PA 393 GK14544-PA 188..393 1..206 1082 97.6 Plus
Dwil\GK12565-PA 560 GK12565-PA 216..379 21..185 216 34.7 Plus
Dwil\GK14544-PA 393 GK14544-PA 35..164 40..172 208 35.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Pect-PA 384 GE18624-PA 179..384 1..206 1109 100 Plus
Dyak\GE21159-PA 520 GE21159-PA 208..352 40..185 221 37.2 Plus
Dyak\GE21160-PA 380 GE21160-PA 81..225 40..185 217 37.8 Plus
Dyak\Pect-PA 384 GE18624-PA 23..175 37..192 211 33.3 Plus

SD08668.hyp Sequence

Translation from 217 to 837

> SD08668.hyp
MGQDSAAKSPWTGCSQFLPTTQKIIQFSDGKSPNPGDKIVYVAGAFDLFH
VGHLDFLEKAKKLGDYLIVGLHTDPVVNSYKGSNYPIMNLHERVLSVLAC
KFVNEVVIGAPYCVTEELLEHFKIDVVCHGRTPIALENGKIDPYAVPKTR
AIFELIDSGNEMTTERIVERIISHRLEYERRNQAKEKKEIEAFEALQRQK
QTQKAG*

SD08668.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
Pect-PD 381 CG5547-PD 176..381 1..206 1077 100 Plus
Pect-PB 393 CG5547-PB 188..393 1..206 1077 100 Plus
Pect-PC 374 CG5547-PC 171..374 3..206 1063 99.5 Plus
Pect-PE 371 CG5547-PE 169..371 4..206 1048 98.5 Plus
Cct2-PA 381 CG18330-PA 81..225 40..185 210 37.8 Plus
Pect-PE 371 CG5547-PE 20..172 37..192 209 33.3 Plus
Pect-PB 393 CG5547-PB 20..178 37..199 207 33.1 Plus
Pect-PD 381 CG5547-PD 20..171 37..191 205 32.9 Plus
Pect-PC 374 CG5547-PC 20..171 37..191 205 32.9 Plus