Clone SD09038 Report

Search the DGRC for SD09038

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:90
Well:38
Vector:pOT2
Associated Gene/TranscriptCG33156-RC
Protein status:SD09038.pep: gold
Sequenced Size:2028

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33156 2002-10-31 Blastp of sequenced clone
CG33156 2008-04-29 Release 5.5 accounting
CG33156 2008-08-15 Release 5.9 accounting
CG33156 2008-12-18 5.12 accounting

Clone Sequence Records

SD09038.complete Sequence

2028 bp (2028 high quality bases) assembled on 2002-10-31

GenBank Submission: BT001874

> SD09038.complete
AAGAATTCGTTAACAATCAGTGCGGTGTACTGCATTTAAACGGCATATAT
AGCACGGCATTCCTCCAGATAGGGCACAGATGTGTCCCTGATCTCTCCAA
GCATCTGCAGGCATACAAGTGGAATGCCAGCACCAGAGGACCTAAACTCC
TCCGACCAAGAGGAATATTTCTGCACCGAAAAGGACGCCGCTGCCGATGG
AAGTCATCTGTTGCATGCCCCTGGAACGGTGGATGGAGCAACTGCATCCA
CCTCGGCTCCGGGACTGGGCGGCAACCACATGACCAGCAGCTGGTGGTGG
TAAGGTCCCAATCACCTGCCCGAATTTGTAATCATGCGGTCTTATACACA
ACTCTTATCGGATTCCCATCTCACATGCAACAACACAGTGGTGGCCGTAC
GAATAGGTGCTTTAAGCGATAATTCCATTGACCTGGCACGCGACTAGCAT
TCAGTGCGCACTCGCAGCTTGAATGCACCCTCGCCTGTCCAGCAGTTCGG
ACCATGTGGTCGCATCATGAAAAACTCCGCCATGGTGATGCAGATCCAGG
ATCCGGCTAGTCAACGTCTCACCTGGTACAAGCCACCACTCACCGTGCTC
GTGATCAAGAAGGTCAGCGATGCCTCGGTGCTGGCACCGTTCGTCTACCT
GGTGGACTGGCTGCTGCAGGAGAAGAACATGGTCGTTTGGGTGGAGTCGG
CCGTGCTGGAGGATGTCCAGCTCAACGAAAATGTGCGATTCAAGGCCATT
CGGGATAAGCTAGTGACTTTCAAAGATGGCCGAGATGATCTGACCGATCG
CATAGACTTTATAGTTTGCCTGGGTGGCGATGGCACCCTGCTGTATGCTT
CGCTGCTCTTCCAGCAATCTGTGCCCCCCGTCATGGCCTTCCATTTGGGC
TCCCTCGGCTTTCTCACACCCTTCCGTTTCGATAACTTTGAGGAGCAGCT
GACCAGCGTCCTGGAGGGTCACGCTGCCCTAACGCTTCGCAGTCGTTTGC
GCTGTGTTATGCATCGCAGGAGCGATAGGAAACACGAGGCTAAGACTCTG
GAGGCAGATCTAGATGGTGAGGCGCGACCTGCAGCCAACAGCATACTGGT
GCTCAACGAAGTGGTCATTGATCGTGGTCCATCGCCGTATCTGAGCAATA
TTGATCTGTTTCTGGACGGAAAGTATATCACGTCGGTGCAGGGCGACGGT
CTGATCGTATCGACGCCCACGGGAAGCACGGCATATGCGGCGGCGGCCGG
TGCGTCCATGATCCATCCCTCCGTGCCGGCGATTATGGTGACTCCCATCT
GCCCGCATTCGCTTAGCTTCCGACCCATTGTGGTGCCAGCAGGAGTGGAG
CTGAAGATATCAGTATCCCCCGAGAGCCGCAACACATCGTGGGTTAGCTT
CGATGGACGCAACAGGCAGGAGCTCTTCCATGGCGACAGCCTTCGCGTGA
CCACCTCCATTTATCCCGTGCCATGCATCTGCGCCCAGGATCAGATATCC
GACTGGTTCGCCTCCCTAGCCGACGGACTGCACTGGAATGTGCGCAAGCG
ACAGAAGTGCCTGGACGAGCTGTCGGATCTGACGGCATCCGGATCGGAGG
ATACGCTGGACGAGATCGAGAACATGAAATTGTACGATGTGTAGTGCGTA
AGTCCCTGCAGCTAATAGAAACCGTAGGTTAGGGCTTTTAGTTGTAGTTC
TAATGCTTTCGCCCTTTGCTTAGTGTGTAATTTTTGTAGTATTTTCGGTA
ACAAATTGTTTAAACACATTTGCCAAATGTATGGAAATCATTTTATAACT
TTTACTGTTCGAAACGCCAGTGCTCTTGCAATATTGTACATTTCAGCTAG
TTAAATATAAATGCAGTTGCAAACTGTAGCAAAAAGTTGTAGAGAGCATT
GAATGAATGAATCTCAAATCTTTGAGAATTAACATTAAAAAGTCCCACTT
CTAAAAAGATAAGCAATTGAATTATATATTACTTAATAAAATAATACCTG
TAAATTCAAAAAAAAAAAAAAAAAAAAA

SD09038.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:36:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-RC 2120 CG33156-RC 22..2029 1..2008 10040 100 Plus
CG33156-RA 2024 CG33156-RA 381..1933 456..2008 7765 100 Plus
CG33156-RE 3426 CG33156-RE 776..2328 456..2008 7765 100 Plus
CG33156-RA 2024 CG33156-RA 82..381 1..300 1500 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9435545..9436197 2007..1355 3265 100 Minus
chr2R 21145070 chr2R 9436255..9436837 1356..774 2915 100 Minus
chr2R 21145070 chr2R 9439252..9439707 456..1 2280 100 Minus
chr2R 21145070 chr2R 9436900..9437217 773..456 1590 100 Minus
chr2R 21145070 chr2R 9425499..9425769 1356..1086 770 85.6 Minus
chr2R 21145070 chr2R 9425926..9426156 1004..774 585 83.5 Minus
chr2R 21145070 chr2R 9426405..9426650 704..456 580 83.1 Minus
chr2R 21145070 chr2R 9425100..9425352 1607..1355 545 81 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:52:38 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13548243..13548896 2008..1355 3270 100 Minus
2R 25286936 2R 13548954..13549536 1356..774 2915 100 Minus
2R 25286936 2R 13551951..13552406 456..1 2280 100 Minus
2R 25286936 2R 13549599..13549916 773..456 1590 100 Minus
2R 25286936 2R 13538198..13538468 1356..1086 770 85.6 Minus
2R 25286936 2R 13538625..13538855 1004..774 585 83.5 Minus
2R 25286936 2R 13539104..13539349 704..456 580 83.1 Minus
2R 25286936 2R 13537799..13538051 1607..1355 545 81 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13549442..13550095 2008..1355 3270 100 Minus
2R 25260384 2R 13550153..13550735 1356..774 2915 100 Minus
2R 25260384 2R 13553150..13553605 456..1 2280 100 Minus
2R 25260384 2R 13550798..13551115 773..456 1590 100 Minus
2R 25260384 2R 13539397..13539667 1356..1086 770 85.6 Minus
2R 25260384 2R 13539824..13540054 1004..774 585 83.5 Minus
2R 25260384 2R 13538998..13539250 1607..1355 545 81 Minus
2R 25260384 2R 13540392..13540548 612..456 485 87.2 Minus
2R 25260384 2R 13540303..13540380 704..627 210 84.6 Minus
Blast to na_te.dros performed on 2019-03-15 23:07:14 has no hits.

SD09038.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:08:10 Download gff for SD09038.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9435545..9436195 1357..2007 100 <- Minus
chr2R 9436255..9436837 774..1356 100 <- Minus
chr2R 9436900..9437217 456..773 100 <- Minus
chr2R 9439253..9439707 1..455 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:04:55 Download gff for SD09038.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 165..1362 445..1644 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:08:19 Download gff for SD09038.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 165..1362 445..1644 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:28:18 Download gff for SD09038.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RE 285..1473 456..1644 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:58:42 Download gff for SD09038.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RB 165..1362 445..1644 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:19:51 Download gff for SD09038.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RE 285..1473 456..1644 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:28:45 Download gff for SD09038.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RC 1..2007 1..2007 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:08:19 Download gff for SD09038.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RC 1..2007 1..2007 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:28:18 Download gff for SD09038.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RC 24..2030 1..2007 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:58:43 Download gff for SD09038.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RC 1..2007 1..2007 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:19:51 Download gff for SD09038.complete
Subject Subject Range Query Range Percent Splice Strand
CG33156-RC 24..2030 1..2007 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:08:10 Download gff for SD09038.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13548244..13548894 1357..2007 100 <- Minus
2R 13548954..13549536 774..1356 100 <- Minus
2R 13549599..13549916 456..773 100 <- Minus
2R 13551952..13552406 1..455 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:08:10 Download gff for SD09038.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13548244..13548894 1357..2007 100 <- Minus
2R 13548954..13549536 774..1356 100 <- Minus
2R 13549599..13549916 456..773 100 <- Minus
2R 13551952..13552406 1..455 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:08:10 Download gff for SD09038.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13548244..13548894 1357..2007 100 <- Minus
2R 13548954..13549536 774..1356 100 <- Minus
2R 13549599..13549916 456..773 100 <- Minus
2R 13551952..13552406 1..455 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:28:18 Download gff for SD09038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9435749..9436399 1357..2007 100 <- Minus
arm_2R 9436459..9437041 774..1356 100 <- Minus
arm_2R 9437104..9437421 456..773 100 <- Minus
arm_2R 9439457..9439911 1..455 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:30:41 Download gff for SD09038.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13549443..13550093 1357..2007 100 <- Minus
2R 13550153..13550735 774..1356 100 <- Minus
2R 13550798..13551115 456..773 100 <- Minus
2R 13553151..13553605 1..455 100   Minus

SD09038.pep Sequence

Translation from 516 to 1643

> SD09038.pep
MKNSAMVMQIQDPASQRLTWYKPPLTVLVIKKVSDASVLAPFVYLVDWLL
QEKNMVVWVESAVLEDVQLNENVRFKAIRDKLVTFKDGRDDLTDRIDFIV
CLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFRFDNFEEQLTSVLE
GHAALTLRSRLRCVMHRRSDRKHEAKTLEADLDGEARPAANSILVLNEVV
IDRGPSPYLSNIDLFLDGKYITSVQGDGLIVSTPTGSTAYAAAAGASMIH
PSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSPESRNTSWVSFDGRNR
QELFHGDSLRVTTSIYPVPCICAQDQISDWFASLADGLHWNVRKRQKCLD
ELSDLTASGSEDTLDEIENMKLYDV*

SD09038.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11176-PA 543 GF11176-PA 169..543 1..375 1823 95.2 Plus
Dana\GF11178-PA 544 GF11178-PA 128..543 1..374 1482 73.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22480-PA 643 GG22480-PA 269..643 1..375 1981 99.2 Plus
Dere\GG22483-PA 549 GG22483-PA 130..548 1..374 1504 74.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22631-PA 442 GH22631-PA 69..442 1..375 1810 90.1 Plus
Dgri\GH22633-PA 564 GH22633-PA 143..563 1..374 1516 73.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-PF 450 CG33156-PF 76..450 1..375 1933 100 Plus
CG33156-PB 453 CG33156-PB 79..453 1..375 1933 100 Plus
CG33156-PE 490 CG33156-PE 116..490 1..375 1933 100 Plus
CG33156-PA 454 CG33156-PA 80..454 1..375 1933 100 Plus
CG33156-PC 375 CG33156-PC 1..375 1..375 1933 100 Plus
CG6145-PF 484 CG6145-PF 65..483 1..374 1519 73.6 Plus
CG6145-PE 483 CG6145-PE 64..482 1..374 1519 73.6 Plus
CG6145-PB 420 CG6145-PB 1..419 1..374 1519 73.6 Plus
CG6145-PC 548 CG6145-PC 129..547 1..374 1519 73.6 Plus
CG6145-PA 520 CG6145-PA 101..519 1..374 1519 73.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21327-PA 412 GI21327-PA 28..412 1..375 1764 87.1 Plus
Dmoj\GI21329-PA 560 GI21329-PA 139..560 1..375 1527 74.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17065-PA 546 GL17065-PA 175..546 1..375 1804 94.4 Plus
Dper\GL17067-PA 557 GL17067-PA 129..550 1..375 1516 74 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17329-PA 605 GA17329-PA 234..605 1..375 1803 94.4 Plus
Dpse\GA24350-PA 557 GA24350-PA 129..550 1..375 1517 74 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20268-PA 523 GM20268-PA 149..523 1..375 1977 99.5 Plus
Dsec\GM20270-PA 548 GM20270-PA 129..547 1..374 1502 74.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25753-PA 519 GD25753-PA 100..518 1..374 1500 74.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19672-PA 448 GJ19672-PA 75..448 1..375 1806 90.7 Plus
Dvir\GJ19674-PA 557 GJ19674-PA 137..556 1..374 1507 74 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15608-PA 475 GK15608-PA 110..474 1..374 1791 92 Plus
Dwil\GK15610-PA 569 GK15610-PA 143..569 1..375 1511 73.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13352-PA 454 GE13352-PA 80..454 1..375 1971 98.9 Plus
Dyak\GE13354-PA 522 GE13354-PA 103..521 1..374 1503 74.3 Plus

SD09038.hyp Sequence

Translation from 516 to 1643

> SD09038.hyp
MKNSAMVMQIQDPASQRLTWYKPPLTVLVIKKVSDASVLAPFVYLVDWLL
QEKNMVVWVESAVLEDVQLNENVRFKAIRDKLVTFKDGRDDLTDRIDFIV
CLGGDGTLLYASLLFQQSVPPVMAFHLGSLGFLTPFRFDNFEEQLTSVLE
GHAALTLRSRLRCVMHRRSDRKHEAKTLEADLDGEARPAANSILVLNEVV
IDRGPSPYLSNIDLFLDGKYITSVQGDGLIVSTPTGSTAYAAAAGASMIH
PSVPAIMVTPICPHSLSFRPIVVPAGVELKISVSPESRNTSWVSFDGRNR
QELFHGDSLRVTTSIYPVPCICAQDQISDWFASLADGLHWNVRKRQKCLD
ELSDLTASGSEDTLDEIENMKLYDV*

SD09038.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG33156-PC 375 CG33156-PC 1..375 1..375 1933 100 Plus
CG33156-PF 450 CG33156-PF 76..450 1..375 1933 100 Plus
CG33156-PB 453 CG33156-PB 79..453 1..375 1933 100 Plus
CG33156-PA 454 CG33156-PA 80..454 1..375 1933 100 Plus
CG33156-PE 490 CG33156-PE 116..490 1..375 1933 100 Plus