Clone SD09370 Report

Search the DGRC for SD09370

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:93
Well:70
Vector:pOT2
Associated Gene/TranscriptMFS16-RA
Protein status:SD09370.pep: gold
Preliminary Size:2310
Sequenced Size:2217

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10069 2001-07-04 Blastp of sequenced clone
CG10069 2008-04-29 Release 5.5 accounting
CG10069 2008-08-15 Release 5.9 accounting
CG10069 2008-12-18 5.12 accounting

Clone Sequence Records

SD09370.complete Sequence

2217 bp (2217 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052136

> SD09370.complete
CGGCACGAGCAGCAGTCGATGTTTCTCCACCTTTATTTTGTTATTTTCCG
ACGGAGTAATGTTTACTGCAGCTGTTTAGTGTGTGTTTAACGGTAGCTGG
CATTACTCGCAACCGAAACGGATTCGGGAACCCAGCCACCTGGACGAGCA
GCACTTGCACCTCGCCCACTGTCCGCGCCGGTCGATGAGAGCTTCACTGG
GATTGGGCAGAACGCGAAAGATGAGCAATAACTACAACGACGTGCCATTC
GGCATCCGGGCGGTGCAGCGGCTGTCCCGACAATGCTGCACCCGCTTCCA
TGCCCGCAGAGATTTGCTCTACAAGATGTCAGTGTTTGTGCTAACTTTCC
TGGCCTACGCCTGCTATCACATGTGCCGCAAGCCCATCTCCGTAGTCAAG
TCGGTGCTGCAAGGAAACTGTTCCACAGCGCTGGCTGCATCGGGTCAAGA
TTGTGGATATGCGCCCTTTGATGTTCCCGATGCCACCACACTCTTTGGAA
TGCTGGACTCGGCCTTCCTCTTCTCCTATGCCATCGCTATGTTCGCTTCT
GGTTTCGTGGCGGAACGCGTTTCCCTGCGATACTTCTTGTCCATGGGCAT
GATCCTCACCGGAGTGTTCACCTACATGTTCGGCATTGCTCGCACCTCCA
ATATCCATAGCTTGTGGTATTTTATAATAGTGCAAATATTCGCTGGCATC
TTCCAGACGACCGGATGGCCAGGTGTAGTGGCCCTGGTGGGTCGTTGGTT
TGGAAAGTCGAAACGCGGGCTCATCTTTGGTATATGGAACAGTCATACGT
CTATTGGAAACATTCTCGGCACGCTGATAGCGGCGCATTATGTGGAATCC
GATTGGGCGCTGTCGTTTGTGGTACCCGGCATTATCATTGCAGCCGTTGG
ATTTTTACTCTTCCTTTTCCTAGTGGATCAGCCGGAGATTGTGGGCTGTT
ATCCACAAGCCGGACAGCATGAGCGTCGCGTGGCCAACGAGTCTGATGTG
GAACAGGACGACGAGGAGCAGGTGCGCCATAACGATGCGGAAATCAACTA
TAGATCTGCTCCCACCGAACGTACTCCAATCCTTCCACGATCTCAACCAG
AGGCGGTGCCAAGGGGTCGCGGACGTCCCATCAGTCTGATCGATGCTTTA
TTCATACCCGGTGTGGTAGAGTTTTCGCTGTGTTTGTTCTTTACCAAGCT
GGTGAGCTACACCTTCATGTACTGGCTGCCACTTTACATACAAAAATCCA
GCACATTGGGTCCAGAACTGTCCGCTGATTTGTCCACTCTTTTCGATGTG
GGTGGTATTTTGGGTGCAATAGCTGCGGGCTATCTATCAGATGTGAGCGG
AATGTCGGCCACCGTCTGCACAGGCATGTTGTTCGTTGCCTCGCCCATTC
TGCTGATGTATCAACAATATGGTGCATTGTCGATGACAATCAGCATAGTG
CTCTTGATTGTGGTCGGCATCTTTGTGAACGGACCATATGCCCTGATTAC
AACCTCTGTAAGTGCAGAGCTGGGCCAGCACAGCTCCTTGGAGGGAAATG
CCAATGCTCTGGCCACGGTGACGGCCATTATCGATGGTACTGGGTCAATC
GGAGCGGCAGTTGGGCCACTGCTTGCCGGCCTTATCTCCACCGCTGGATG
GCAGTATGTCTTCCACATGCTCATCGCTGCCGACATCATTGCCATGGTGC
TGCTGGGGCGACTGGTCTTCAAGGAGTTCGCTGCACTGCGTCGTGCATCG
CATCGTATTCGGATTGAATAGCAGGAAGAAGTCGAGTCGGATTTGGTTTG
ACCATATATATATTTCTGTTTCTAGCGTTCTCTGTACATACCATAGCATT
TGTATAGCTAACATAAAGAACGTTTTCTTTTCATTCGAGAGCATATCAGA
GTGTTTCTGATCCTAGTTTTACCCATACATGTCAATACATAATGTTATTT
TAAATGGAATGTTTACCATCATCCTAGGCTATCCATCAAGTTTACAATTT
TGATATATTACCTACATACATATATATATATATATATATATACATACATC
TATGTTGTAATCTTGTGTGTGCGCGCGTGTGTCAGAGTCTCCTCGTTTTA
AGTGCCGAACTATCATTAGTACTAGCGTAATTCTACTGCTATGTAAATAC
ACTTTATCGTACACTTTTCGTACCAATAAAACCGAATTTGACTGTTAAAA
AAAAAAAAAAAAAAAAA

SD09370.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:25:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10069-RA 2359 CG10069-RA 101..2288 9..2196 10670 99.1 Plus
CG10069-RC 2708 CG10069-RC 534..2637 93..2196 10250 99.1 Plus
CG10069-RB 2454 CG10069-RB 280..2383 93..2196 10250 99.1 Plus
CG10069-RC 2708 CG10069-RC 11..97 9..95 435 100 Plus
CG10069-RB 2454 CG10069-RB 23..109 9..95 435 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:56:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17171350..17172146 1400..2196 3910 99.4 Plus
chr2R 21145070 chr2R 17170037..17170607 470..1040 2855 100 Plus
chr2R 21145070 chr2R 17169481..17169707 92..318 1135 100 Plus
chr2R 21145070 chr2R 17170876..17171088 1039..1251 1065 100 Plus
chr2R 21145070 chr2R 17169826..17169977 319..470 760 100 Plus
chr2R 21145070 chr2R 17171145..17171293 1251..1399 745 100 Plus
chr2R 21145070 chr2R 17168803..17168889 9..95 435 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:52:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21284855..21285651 1400..2196 3835 98.7 Plus
2R 25286936 2R 21283542..21284112 470..1040 2765 98.9 Plus
2R 25286936 2R 21282986..21283212 92..318 1120 99.6 Plus
2R 25286936 2R 21284381..21284593 1039..1251 1065 100 Plus
2R 25286936 2R 21283331..21283482 319..470 745 99.3 Plus
2R 25286936 2R 21284650..21284798 1251..1399 745 100 Plus
2R 25286936 2R 21282308..21282394 9..95 435 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:48:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21286054..21286850 1400..2196 3835 98.7 Plus
2R 25260384 2R 21284741..21285311 470..1040 2765 98.9 Plus
2R 25260384 2R 21284185..21284411 92..318 1120 99.5 Plus
2R 25260384 2R 21285580..21285792 1039..1251 1065 100 Plus
2R 25260384 2R 21285849..21285997 1251..1399 745 100 Plus
2R 25260384 2R 21284530..21284681 319..470 745 99.3 Plus
2R 25260384 2R 21283507..21283593 9..95 435 100 Plus
Blast to na_te.dros performed 2019-03-16 09:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 815..872 2048..1992 134 72.4 Minus
Tabor 7345 Tabor TABOR 7345bp 2261..2355 1952..2045 121 61.5 Plus
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 5105..5256 2066..1916 118 57.7 Minus

SD09370.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:57:54 Download gff for SD09370.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17170877..17171087 1040..1250 100 -> Plus
chr2R 17171145..17171293 1251..1399 100 -> Plus
chr2R 17168795..17168886 1..92 95 -> Plus
chr2R 17169482..17169707 93..318 100 -> Plus
chr2R 17169826..17169977 319..470 100 -> Plus
chr2R 17170038..17170606 471..1039 100 -> Plus
chr2R 17171350..17172146 1400..2196 94   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:05:13 Download gff for SD09370.complete
Subject Subject Range Query Range Percent Splice Strand
CG10069-RB 19..1701 89..1771 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:11:40 Download gff for SD09370.complete
Subject Subject Range Query Range Percent Splice Strand
CG10069-RB 19..1701 89..1771 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:07:58 Download gff for SD09370.complete
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 19..1701 89..1771 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:42:45 Download gff for SD09370.complete
Subject Subject Range Query Range Percent Splice Strand
CG10069-RB 19..1701 89..1771 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:50:16 Download gff for SD09370.complete
Subject Subject Range Query Range Percent Splice Strand
MFS16-RB 19..1701 89..1771 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:03:28 Download gff for SD09370.complete
Subject Subject Range Query Range Percent Splice Strand
CG10069-RA 2..2196 3..2196 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:11:40 Download gff for SD09370.complete
Subject Subject Range Query Range Percent Splice Strand
CG10069-RA 2..2196 3..2196 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:58 Download gff for SD09370.complete
Subject Subject Range Query Range Percent Splice Strand
MFS16-RA 3..2198 1..2196 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:42:45 Download gff for SD09370.complete
Subject Subject Range Query Range Percent Splice Strand
CG10069-RA 2..2196 3..2196 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:50:16 Download gff for SD09370.complete
Subject Subject Range Query Range Percent Splice Strand
MFS16-RA 3..2198 1..2196 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:57:54 Download gff for SD09370.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21282300..21282391 1..92 95 -> Plus
2R 21282987..21283212 93..318 99 -> Plus
2R 21283331..21283482 319..470 99 -> Plus
2R 21283543..21284111 471..1039 98 -> Plus
2R 21284382..21284592 1040..1250 100 -> Plus
2R 21284650..21284798 1251..1399 100 -> Plus
2R 21284855..21285651 1400..2196 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:57:54 Download gff for SD09370.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21282300..21282391 1..92 95 -> Plus
2R 21282987..21283212 93..318 99 -> Plus
2R 21283331..21283482 319..470 99 -> Plus
2R 21283543..21284111 471..1039 98 -> Plus
2R 21284382..21284592 1040..1250 100 -> Plus
2R 21284650..21284798 1251..1399 100 -> Plus
2R 21284855..21285651 1400..2196 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:57:54 Download gff for SD09370.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21282300..21282391 1..92 95 -> Plus
2R 21282987..21283212 93..318 99 -> Plus
2R 21283331..21283482 319..470 99 -> Plus
2R 21283543..21284111 471..1039 98 -> Plus
2R 21284382..21284592 1040..1250 100 -> Plus
2R 21284650..21284798 1251..1399 100 -> Plus
2R 21284855..21285651 1400..2196 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:58 Download gff for SD09370.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17169805..17169896 1..92 95 -> Plus
arm_2R 17170492..17170717 93..318 99 -> Plus
arm_2R 17170836..17170987 319..470 99 -> Plus
arm_2R 17171048..17171616 471..1039 98 -> Plus
arm_2R 17171887..17172097 1040..1250 100 -> Plus
arm_2R 17172155..17172303 1251..1399 100 -> Plus
arm_2R 17172360..17173156 1400..2196 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:20:22 Download gff for SD09370.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21283499..21283590 1..92 95 -> Plus
2R 21284186..21284411 93..318 99 -> Plus
2R 21284530..21284681 319..470 99 -> Plus
2R 21284742..21285310 471..1039 98 -> Plus
2R 21285581..21285791 1040..1250 100 -> Plus
2R 21285849..21285997 1251..1399 100 -> Plus
2R 21286054..21286850 1400..2196 98   Plus

SD09370.pep Sequence

Translation from 184 to 1770

> SD09370.pep
MRASLGLGRTRKMSNNYNDVPFGIRAVQRLSRQCCTRFHARRDLLYKMSV
FVLTFLAYACYHMCRKPISVVKSVLQGNCSTALAASGQDCGYAPFDVPDA
TTLFGMLDSAFLFSYAIAMFASGFVAERVSLRYFLSMGMILTGVFTYMFG
IARTSNIHSLWYFIIVQIFAGIFQTTGWPGVVALVGRWFGKSKRGLIFGI
WNSHTSIGNILGTLIAAHYVESDWALSFVVPGIIIAAVGFLLFLFLVDQP
EIVGCYPQAGQHERRVANESDVEQDDEEQVRHNDAEINYRSAPTERTPIL
PRSQPEAVPRGRGRPISLIDALFIPGVVEFSLCLFFTKLVSYTFMYWLPL
YIQKSSTLGPELSADLSTLFDVGGILGAIAAGYLSDVSGMSATVCTGMLF
VASPILLMYQQYGALSMTISIVLLIVVGIFVNGPYALITTSVSAELGQHS
SLEGNANALATVTAIIDGTGSIGAAVGPLLAGLISTAGWQYVFHMLIAAD
IIAMVLLGRLVFKEFAALRRASHRIRIE*

SD09370.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12808-PA 528 GF12808-PA 1..528 13..528 2361 88.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22106-PA 528 GG22106-PA 1..528 1..528 2735 98.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21864-PA 530 GH21864-PA 7..530 9..528 2236 81.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
MFS16-PD 528 CG10069-PD 1..528 1..528 2702 100 Plus
MFS16-PC 528 CG10069-PC 1..528 1..528 2702 100 Plus
MFS16-PB 566 CG10069-PB 39..566 1..528 2702 100 Plus
MFS16-PA 528 CG10069-PA 1..528 1..528 2702 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20365-PA 522 GI20365-PA 1..522 13..528 2133 79.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11333-PA 399 GL11333-PA 1..398 13..405 1860 86.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24689-PA 484 GA24689-PA 1..484 13..528 2125 79.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15825-PA 566 GM15825-PA 39..566 1..528 2756 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11582-PA 551 GD11582-PA 39..551 1..528 2656 96.2 Plus
Dsim\GD15444-PA 139 GD15444-PA 1..139 390..528 696 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22092-PA 522 GJ22092-PA 1..522 13..528 2186 81.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21661-PA 514 GK21661-PA 1..514 13..528 2221 81.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12187-PA 515 GE12187-PA 1..515 13..528 2674 98.3 Plus

SD09370.hyp Sequence

Translation from 184 to 1770

> SD09370.hyp
MRASLGLGRTRKMSNNYNDVPFGIRAVQRLSRQCCTRFHARRDLLYKMSV
FVLTFLAYACYHMCRKPISVVKSVLQGNCSTALAASGQDCGYAPFDVPDA
TTLFGMLDSAFLFSYAIAMFASGFVAERVSLRYFLSMGMILTGVFTYMFG
IARTSNIHSLWYFIIVQIFAGIFQTTGWPGVVALVGRWFGKSKRGLIFGI
WNSHTSIGNILGTLIAAHYVESDWALSFVVPGIIIAAVGFLLFLFLVDQP
EIVGCYPQAGQHERRVANESDVEQDDEEQVRHNDAEINYRSAPTERTPIL
PRSQPEAVPRGRGRPISLIDALFIPGVVEFSLCLFFTKLVSYTFMYWLPL
YIQKSSTLGPELSADLSTLFDVGGILGAIAAGYLSDVSGMSATVCTGMLF
VASPILLMYQQYGALSMTISIVLLIVVGIFVNGPYALITTSVSAELGQHS
SLEGNANALATVTAIIDGTGSIGAAVGPLLAGLISTAGWQYVFHMLIAAD
IIAMVLLGRLVFKEFAALRRASHRIRIE*

SD09370.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
MFS16-PD 528 CG10069-PD 1..528 1..528 2702 100 Plus
MFS16-PC 528 CG10069-PC 1..528 1..528 2702 100 Plus
MFS16-PB 566 CG10069-PB 39..566 1..528 2702 100 Plus
MFS16-PA 528 CG10069-PA 1..528 1..528 2702 100 Plus