Clone SD09476 Report

Search the DGRC for SD09476

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:94
Well:76
Vector:pOT2
Associated Gene/Transcriptsgl-RA
Protein status:SD09476.pep: gold
Preliminary Size:2294
Sequenced Size:2276

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10072 2001-07-04 Blastp of sequenced clone
CG10072 2003-01-01 Sim4 clustering to Release 3
sgl 2008-04-29 Release 5.5 accounting
sgl 2008-08-15 Release 5.9 accounting
sgl 2008-12-18 5.12 accounting

Clone Sequence Records

SD09476.complete Sequence

2276 bp (2276 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052137

> SD09476.complete
CTCCGCCGCCGCGTGAAGTCAGATTTCTCCGAGCGCTCAAACGAACAGCA
CGCGACATTCGCCGGAAAAAAAAACGAGAACCATAAGTTGTGGGAAATTC
GCACAAGGGACAGAAGGAAGAAGAAGCAGCAGCAGACGAAAGGGACGAAC
GGCGAAGCAAAACAAATCGAGCGACGAATAGCGGTGTGCAACGAAATGAA
GGTCTGCTGCATTGGCGCTGGTTATGTCGGCGGTCCGACCTGCGCGGTTA
TGGCGCTCAAATGCCCCGATATCGTGATAACTCTGGTGGACAAGAGCTCC
GAGCGGATTGCCCAGTGGAATTCGGATAAGTTGCCCATTTACGAGCCCGG
CTTGGATGAGGTGGTGAAGAAGTGCCGCAATGTGAACCTCTTCTTCTCAA
CGGACATCGAGACGGCCATCAAGGAGGCGGACCTCATCTTCATCTCGGTG
AACACGCCCACAAAAACCTGCGGCAATGGCAAGGGCCGAGCGGCGGACCT
CAAGTACGTGGAGAGCGCAGCGCGGATGATCGCCGAGATCGCGCAGTCCA
ACAAGATTGTGGTGGAGAAGAGCACGGTGCCCGTGCGGGCGGCGGAGAGC
ATCATGCACATACTGCGAGCGAACCAGAAGCCGGGCATCCACTACGACAT
ACTGTCCAATCCCGAGTTCCTCGCCGAGGGCACCGCCATCAATGACCTGC
TAAATGCGGATCGTGTGCTGATCGGCGGCGAGGAGACGCCCGAGGGCCAC
CAGGCGGTGGAGAAGCTGTCGTGGATCTACGAGCACTGGATACCCAAGCA
GAACATACTCACGACGAACACGTGGAGCAGCGAGCTGTCTAAGCTGGCGG
CCAACGCATTCCTCGCCCAGCGAATCTCCAGCATCAATTCGCTGTCGGCA
GTGTGCGAGGCCACGGGCGCAGATGTTTCCGAGGTGGCGAGGGCCGTGGG
TCTAGACTCTCGCATCGGTTCCAAGTTCCTGCAGGCGTCGGTGGGCTTCG
GCGGCAGTTGCTTTCAGAAGGACATCCTCAATCTGATTTACATCTGCGAG
AACCTCAATCTGCCCGAGGTGGCCGCCTACTGGCAGCAGGTGATCGACAT
GAATGAGTACCAGAAGCGTCGATTCTCGCAGAAAATCATCGAGAGTCTGT
TCAACACGGTGTCGGACAAGCGGATAGCGATCCTGGGCTTTGCCTTCAAG
AAGAATACGGGCGATACGCGCGAAACAGCCGCCATTACCGTGTGCCAAAC
TCTGCTGGAGGAGGGCGCCGCGCTGGATATCTACGATCCGAAGGTGGAAC
CCGAGCAGATCATCGATGACCTCACGCATCCCAGTGTCACGGAATCGCCG
GAGAAGGTGAAGAAGGCGGTGCAGATCCACAGTGATCCGTACAGCGCAGT
GCGTGCCACACATGCGTTGGTCATCTGCACGGAGTGGGATGAGTTTGTTG
ATCTGGACTTTAAGCGCATATACCAATCGATGATGAAGCCAGCCTACATC
TTCGACGGCCGCAAGATTCTCGACCACGAGCGCCTGCAGCAGATCGGCTT
CCACGTCCAGACCATCGGCAAGAAGTACCAGCGCACCGGACTGCTCCGCT
CGTGGGGCATTGTGCCGCAGCTTTAGGCGCGTCGGGCGGCGGAGGTGGTG
GCATTTACACTTAAAGTTGGCGAAATTTCCAGTATTTGCGAGACTAAACT
GTAAATATCCGTATTCTTTTCTGTAGCTGAGTGTATGTTAGATTGGGTCG
ATTAAGCTTAAGTTGAATCATGTTTAGGAGAATAGAATCGTTTCAAATCA
TCAGAGGACTCTGTCAGTTTTAAGTGAAAAGTAAAGTTGAATTCTTGCAT
TTTGTATATTAGTTTCTAAAGGATATAAGCTTTTAAAACATTTCTGTATA
TAACTAGAAAGCGAATTACTTATTTGAACAACATAAGGCAATGATTGATT
AACCACAAAGTTATAAAACGTAGCAACTATTTTTGATCAGACAATATACT
ATTATGTAGCTTTCTTCATATCGACCCAAACTAACGAGTGTGTTTCTAAA
TAGTTAAAGTATTCAACTAGGCACACCCGCAAGGGAAACCCTCGAACCGT
ATTTGTATTCATATTCCTATACCTATTCCCCTATCGATCCGCCACTCGAG
GATCGGTAGTTGCAATATTAAGCCCCAACAGGACAGTAATCCCCTCCTGC
GGCGGGCCAATAAAAACCAGCATTTACACGAGAGCATGTAAATTTTTATA
ATAAAAATAAAAAAAAAAAAAAAAAA

SD09476.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
sgl-RA 2377 sgl-RA 113..2372 1..2260 11165 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 6951847..6953621 2258..484 8635 99.1 Minus
chr3L 24539361 chr3L 6956673..6957016 345..1 1600 98.3 Minus
chr3L 24539361 chr3L 6954103..6954244 485..344 710 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:53:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6959552..6961328 2260..484 8750 99.5 Minus
3L 28110227 3L 6964397..6964741 345..1 1725 100 Minus
3L 28110227 3L 6961810..6961951 485..344 710 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 6952652..6954428 2260..484 8750 99.4 Minus
3L 28103327 3L 6957497..6957841 345..1 1725 100 Minus
3L 28103327 3L 6954910..6955051 485..344 710 100 Minus
Blast to na_te.dros performed on 2019-03-15 23:24:04 has no hits.

SD09476.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:24:47 Download gff for SD09476.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 6951870..6953620 485..2235 99 <- Minus
chr3L 6954104..6954242 346..484 100 <- Minus
chr3L 6956673..6957016 1..345 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:05:20 Download gff for SD09476.complete
Subject Subject Range Query Range Percent Splice Strand
sgl-RA 1..1431 196..1626 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:56 Download gff for SD09476.complete
Subject Subject Range Query Range Percent Splice Strand
sgl-RA 1..1431 196..1626 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:27:03 Download gff for SD09476.complete
Subject Subject Range Query Range Percent Splice Strand
sgl-RA 1..1431 196..1626 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:42:10 Download gff for SD09476.complete
Subject Subject Range Query Range Percent Splice Strand
sgl-RA 1..1431 196..1626 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:33:05 Download gff for SD09476.complete
Subject Subject Range Query Range Percent Splice Strand
sgl-RA 1..1431 196..1626 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:13:48 Download gff for SD09476.complete
Subject Subject Range Query Range Percent Splice Strand
sgl-RA 62..2319 1..2258 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:56 Download gff for SD09476.complete
Subject Subject Range Query Range Percent Splice Strand
sgl-RA 62..2319 1..2258 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:27:03 Download gff for SD09476.complete
Subject Subject Range Query Range Percent Splice Strand
sgl-RA 18..2275 1..2258 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:42:10 Download gff for SD09476.complete
Subject Subject Range Query Range Percent Splice Strand
sgl-RA 62..2319 1..2258 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:33:05 Download gff for SD09476.complete
Subject Subject Range Query Range Percent Splice Strand
sgl-RA 18..2275 1..2258 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:24:47 Download gff for SD09476.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6959554..6961327 485..2258 99 <- Minus
3L 6961811..6961949 346..484 100 <- Minus
3L 6964397..6964741 1..345 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:24:47 Download gff for SD09476.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6959554..6961327 485..2258 99 <- Minus
3L 6961811..6961949 346..484 100 <- Minus
3L 6964397..6964741 1..345 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:24:47 Download gff for SD09476.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6959554..6961327 485..2258 99 <- Minus
3L 6961811..6961949 346..484 100 <- Minus
3L 6964397..6964741 1..345 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:27:03 Download gff for SD09476.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6952654..6954427 485..2258 99 <- Minus
arm_3L 6954911..6955049 346..484 100 <- Minus
arm_3L 6957497..6957841 1..345 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:25:26 Download gff for SD09476.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6952654..6954427 485..2258 99 <- Minus
3L 6954911..6955049 346..484 100 <- Minus
3L 6957497..6957841 1..345 100   Minus

SD09476.hyp Sequence

Translation from 0 to 1625

> SD09476.hyp
LRRRVKSDFSERSNEQHATFAGKKNENHKLWEIRTRDRRKKKQQQTKGTN
GEAKQIERRIAVCNEMKVCCIGAGYVGGPTCAVMALKCPDIVITLVDKSS
ERIAQWNSDKLPIYEPGLDEVVKKCRNVNLFFSTDIETAIKEADLIFISV
NTPTKTCGNGKGRAADLKYVESAARMIAEIAQSNKIVVEKSTVPVRAAES
IMHILRANQKPGIHYDILSNPEFLAEGTAINDLLNADRVLIGGEETPEGH
QAVEKLSWIYEHWIPKQNILTTNTWSSELSKLAANAFLAQRISSINSLSA
VCEATGADVSEVARAVGLDSRIGSKFLQASVGFGGSCFQKDILNLIYICE
NLNLPEVAAYWQQVIDMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFK
KNTGDTRETAAITVCQTLLEEGAALDIYDPKVEPEQIIDDLTHPSVTESP
EKVKKAVQIHSDPYSAVRATHALVICTEWDEFVDLDFKRIYQSMMKPAYI
FDGRKILDHERLQQIGFHVQTIGKKYQRTGLLRSWGIVPQL*

SD09476.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
sgl-PA 476 CG10072-PA 1..476 66..541 2454 100 Plus

SD09476.pep Sequence

Translation from 195 to 1625

> SD09476.pep
MKVCCIGAGYVGGPTCAVMALKCPDIVITLVDKSSERIAQWNSDKLPIYE
PGLDEVVKKCRNVNLFFSTDIETAIKEADLIFISVNTPTKTCGNGKGRAA
DLKYVESAARMIAEIAQSNKIVVEKSTVPVRAAESIMHILRANQKPGIHY
DILSNPEFLAEGTAINDLLNADRVLIGGEETPEGHQAVEKLSWIYEHWIP
KQNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVARA
VGLDSRIGSKFLQASVGFGGSCFQKDILNLIYICENLNLPEVAAYWQQVI
DMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTRETAAITVC
QTLLEEGAALDIYDPKVEPEQIIDDLTHPSVTESPEKVKKAVQIHSDPYS
AVRATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQI
GFHVQTIGKKYQRTGLLRSWGIVPQL*

SD09476.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10882-PA 476 GF10882-PA 1..476 1..476 2509 98.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:01:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15016-PA 476 GG15016-PA 1..476 1..476 2542 99.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16103-PA 476 GH16103-PA 1..476 1..476 2485 96.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
sgl-PA 476 CG10072-PA 1..476 1..476 2454 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12367-PA 476 GI12367-PA 1..476 1..476 2482 96.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15063-PA 430 GL15063-PA 1..430 1..476 2039 83.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10050-PA 476 GA10050-PA 1..476 1..476 2482 97.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13805-PA 476 GM13805-PA 1..476 1..476 2555 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13103-PA 476 GD13103-PA 1..476 1..476 2555 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12259-PA 476 GJ12259-PA 1..476 1..476 2491 97.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17198-PA 476 GK17198-PA 1..476 1..476 2498 97.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20458-PA 476 GE20458-PA 1..476 1..476 2548 99.8 Plus