Clone SD09738 Report

Search the DGRC for SD09738

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:97
Well:38
Vector:pOT2
Associated Gene/Transcriptuzip-RA
Protein status:SD09738.pep: gold
Preliminary Size:2554
Sequenced Size:2494

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3533 2001-07-04 Blastp of sequenced clone
CG3533 2003-01-01 Sim4 clustering to Release 3
uzip 2008-04-29 Release 5.5 accounting
uzip 2008-08-15 Release 5.9 accounting
uzip 2008-12-18 5.12 accounting

Clone Sequence Records

SD09738.complete Sequence

2494 bp (2494 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052139

> SD09738.complete
TCCTCTCTTCGAATCAGTTCTTGGTAAAACCAAACTTCAATAAACCGTTG
GGTTAATGCGCGGATGTGCGGATACTTTCAGTTAATTTTGAATTTTTCGA
GGAACGGTGAAGGTCCGCGCTTGAATCAAATCCTAAGTGAGGGACTCCGA
ATAGGATTCATTGGATGACAAACTAACGTGCAGCCAGGAATTATCGATTC
AGATCCCACCTCTTTTGGGCACAAACTGGATTGACAAAAGTCAGAGTCCA
ATCACTACGAAGTACAATCAGCACGATGACATCAAATAGTTGTTTAATCA
GTCTAGGCCTTCTCCTGGTCCTTATTCAAATTCTAGCTCCAGCAAAGGCT
GCGGAGCACTCAGTGTTCACCCACAAAAACGCATCATCGGTCTTGGGTCA
ATTGGTTACCTCGAGTACCCTAGTATGGGAAAGCTATGACCCCAAGGATG
CTACACAGTTGCAGTTCGCCGTGGAGGGCGGAAAGTACGTTACTGAGGAT
GAGCATTACCCCATGTACGTATGTCGTGTACCAATCGATGGTATCCAAGT
GTCCGGCCATACCGAGAAAATCCTTCAGAGACACGTCTGCCTTGCGGCCC
ACTATAAGCACGGAAAATACGACAACTTCGATGTCCTTATGAACAAGGGT
CACCTGGGGAAGGTTGGCTGGCGTCATTGGCGTAAGTTCGATGCTGGTGT
TCCCGTCGGTGCCATACGCATTGGAGATGACTCTTACATTGGTCGCCATC
GGGCCCCAAGTCAACCGAACAAGGACGGGGTCGTCACCCATTGGGGAGCA
GACTTCAATCTGGGCCACTTGGAGCCGGTGGGTCTGGGAAAAATTAGGGT
CATCGAAGCCGAACGTGAGAAGTACTACGACGACGGCGAGGTTTTAGTCG
AAACAGAGCCCTTCCGATACGAGCTCAGGGACATCAAACTGGATCGATTG
CGCACTGATATTCAAGAGAATATGACTGAACTGGTTACTAGGAAGCTTGA
AAATCTGGAAGATAAATATAGTACTGTGGAGACTATTCTAAGCTATACCT
TTAACTATAATCAATATTGGGGATCCCACGAGGGTGTTGCTCGTGGTTTA
CCAACAAAAATATTTGAAAAAGATGAAGCCGTTCCGGCTGAAATTAATTG
GGCCTTAAAACACACCGAAAAGCGATCGGAAAACAAGGCAGTGCACACGA
AACTTTGGCCTGGTACAGCAATTAATGTTACGCTACGTGGCAATTATGTG
ACCCTGGAGGCGCCGTACAGTGGCAAGCTCTTTGCTTTTTATTACGGAAG
CGATGAAAGTGTTTCCCGAAAGATCAGCGCAGAGGTGCGAAAGAGCTACT
TGAAGGAGGTGAAGCTGGAGTTCAGCCCCGTCTACTGGATTGAGAACGGT
ACTCTGGTACCCACAACGACCACCACAACGACCACATCCACATCGACCAC
GACACATGCCACCACAACCAGCACCAACGAGCCGACGCCCATAAATGAGC
CCCCGCTGGTCCATATGAAGGACAACGGTGTGCAGCATTCAGGTCCCGAT
ACGCTGGAGAAGACCTTGCATGACTCCCCGTCCAGCAACGAATTAAATTC
GCACGAGGCTCCAGAGAACATGTCCTCCGACCCGGGAAAGGATGTGGCGC
TGGCAGGGTTCGGAGTCAACGCAGCGGGGTCAACATTTATTGCGGGGTCG
GCTTTATTAACTCTACTTTTAACAATTTTTTTGAGTCTGTAGATGAAATT
GAGCTGTGGACTCAGTATAGAGTTTAATTGTTGTTGTTGTACCTGTTGTA
CCCGTCTTTGAGAGCGTCAGAGAAACGTAATAAGCAGATAGACATTGTAT
GAATATATAAACTCCAAGAACCGGGAGCGAAAAGCGAAAAGCGAAAAGCA
AAAGTCGATATTTTTTATACTTGTCCCAAGGCTTCTTCTTTAACACGCAT
GCAAGCGAAAGCGAATTTAAATGATCATTAAAATAAACGTAATACATTCC
TAAACAGAACCTCTTACAATCGGAAATAAATCAAAAGTATAATTAAAAAT
AAATTTATTCATATTTTTATGTAGAAATATTTTACAAGTTTTTTTTATTT
GCATGGATTTAAATGGCTTTTCATTTTTGTAGTTAGTAAGCAGCATTAAC
AGCAAGTAGAAAAAATATTAAACTTGAATTGACATTTGCTTAGGGATGGT
ATTATAGATCACGCTCTCTAAAATGATGTATGTATAGTATACATGTATGT
CAAATATGTAAACCTATGTATAACATAAGTACGAGTATGTATGCTATTTT
TTAGGCCAAACACTCAAAATATGTAAAATAGATATTTTTATTTGAGCCCT
TTGATTTAAAGTATGATTTGCGTTTATTTAAGGCTAATCTCTATCATAAT
TAATTTGATTTTAATTAAAACTTCATTAAAGAAACAATGAATATATATAA
ATAAAAGGCTTGTAAATGAAAATCGAAAAAAAAAAAAAAAAAAA

SD09738.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
uzip-RA 2548 uzip-RA 68..2545 1..2478 12360 99.9 Plus
uzip.d 2519 uzip.d 173..2519 129..2475 11705 99.9 Plus
uzip.c 2472 uzip.c 126..2472 129..2475 11705 99.9 Plus
uzip.d 2519 uzip.d 14..141 1..128 640 100 Plus
uzip.c 2472 uzip.c 14..125 1..112 560 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20914876..20916018 1333..2475 5715 100 Plus
chr2R 21145070 chr2R 20913633..20914416 201..984 3920 100 Plus
chr2R 21145070 chr2R 20914473..20914824 984..1335 1760 100 Plus
chr2R 21145070 chr2R 20897999..20898126 1..128 640 100 Plus
chr2R 21145070 chr2R 20898582..20898655 129..202 370 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:53:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 25028944..25030089 1333..2478 5700 99.8 Plus
2R 25286936 2R 25027701..25028484 201..984 3920 100 Plus
2R 25286936 2R 25028541..25028892 984..1335 1760 100 Plus
2R 25286936 2R 25012050..25012177 1..128 640 100 Plus
2R 25286936 2R 25012633..25012706 129..202 370 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 25030143..25031288 1333..2478 5700 99.8 Plus
2R 25260384 2R 25028900..25029683 201..984 3920 100 Plus
2R 25260384 2R 25029740..25030091 984..1335 1760 100 Plus
2R 25260384 2R 25013249..25013376 1..128 640 100 Plus
2R 25260384 2R 25013832..25013905 129..202 370 100 Plus
Blast to na_te.dros performed 2019-03-15 16:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 3701..3940 2221..2456 146 57.3 Plus
S2 1735 S2 S2 1735bp 1590..1653 2087..2024 122 65.6 Minus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 1015..1081 2024..2090 117 71 Plus

SD09738.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:52:29 Download gff for SD09738.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20897999..20898126 1..128 100 -> Plus
chr2R 20898582..20898655 129..202 100 -> Plus
chr2R 20913635..20914416 203..984 100 -> Plus
chr2R 20914474..20914823 985..1334 100 -> Plus
chr2R 20914878..20915580 1335..2037 95 == Plus
chr2R 20915644..20916018 2101..2475 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:07:51 Download gff for SD09738.complete
Subject Subject Range Query Range Percent Splice Strand
uzip-RA 1..1467 276..1742 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:11:43 Download gff for SD09738.complete
Subject Subject Range Query Range Percent Splice Strand
uzip-RA 1..1467 276..1742 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:12:26 Download gff for SD09738.complete
Subject Subject Range Query Range Percent Splice Strand
uzip-RA 1..1467 276..1742 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:42:47 Download gff for SD09738.complete
Subject Subject Range Query Range Percent Splice Strand
uzip-RA 1..1467 276..1742 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:20:00 Download gff for SD09738.complete
Subject Subject Range Query Range Percent Splice Strand
uzip-RA 1..1467 276..1742 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:07:51 Download gff for SD09738.complete
Subject Subject Range Query Range Percent Splice Strand
uzip-RA 1..2475 1..2475 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:11:43 Download gff for SD09738.complete
Subject Subject Range Query Range Percent Splice Strand
uzip-RA 1..2475 1..2475 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:12:26 Download gff for SD09738.complete
Subject Subject Range Query Range Percent Splice Strand
uzip-RA 1..2463 13..2475 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:42:48 Download gff for SD09738.complete
Subject Subject Range Query Range Percent Splice Strand
uzip-RA 1..2475 1..2475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:20:00 Download gff for SD09738.complete
Subject Subject Range Query Range Percent Splice Strand
uzip-RA 1..2463 13..2475 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:52:29 Download gff for SD09738.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25012050..25012177 1..128 100 -> Plus
2R 25012633..25012706 129..202 100 -> Plus
2R 25027703..25028484 203..984 100 -> Plus
2R 25028542..25028891 985..1334 100 -> Plus
2R 25028946..25030086 1335..2475 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:52:29 Download gff for SD09738.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25012050..25012177 1..128 100 -> Plus
2R 25012633..25012706 129..202 100 -> Plus
2R 25027703..25028484 203..984 100 -> Plus
2R 25028542..25028891 985..1334 100 -> Plus
2R 25028946..25030086 1335..2475 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:52:29 Download gff for SD09738.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25012050..25012177 1..128 100 -> Plus
2R 25012633..25012706 129..202 100 -> Plus
2R 25027703..25028484 203..984 100 -> Plus
2R 25028542..25028891 985..1334 100 -> Plus
2R 25028946..25030086 1335..2475 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:12:26 Download gff for SD09738.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20915226..20916007 203..984 100 -> Plus
arm_2R 20899573..20899700 1..128 100 -> Plus
arm_2R 20900156..20900229 129..202 100 -> Plus
arm_2R 20916065..20916414 985..1334 100 -> Plus
arm_2R 20916469..20917609 1335..2475 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:20:25 Download gff for SD09738.complete
Subject Subject Range Query Range Percent Splice Strand
2R 25013850..25013923 129..202 100 -> Plus
2R 25013267..25013394 1..128 100 -> Plus
2R 25028920..25029701 203..984 100 -> Plus
2R 25029759..25030108 985..1334 100 -> Plus
2R 25030163..25031303 1335..2475 99   Plus

SD09738.pep Sequence

Translation from 275 to 1741

> SD09738.pep
MTSNSCLISLGLLLVLIQILAPAKAAEHSVFTHKNASSVLGQLVTSSTLV
WESYDPKDATQLQFAVEGGKYVTEDEHYPMYVCRVPIDGIQVSGHTEKIL
QRHVCLAAHYKHGKYDNFDVLMNKGHLGKVGWRHWRKFDAGVPVGAIRIG
DDSYIGRHRAPSQPNKDGVVTHWGADFNLGHLEPVGLGKIRVIEAEREKY
YDDGEVLVETEPFRYELRDIKLDRLRTDIQENMTELVTRKLENLEDKYST
VETILSYTFNYNQYWGSHEGVARGLPTKIFEKDEAVPAEINWALKHTEKR
SENKAVHTKLWPGTAINVTLRGNYVTLEAPYSGKLFAFYYGSDESVSRKI
SAEVRKSYLKEVKLEFSPVYWIENGTLVPTTTTTTTTSTSTTTHATTTST
NEPTPINEPPLVHMKDNGVQHSGPDTLEKTLHDSPSSNELNSHEAPENMS
SDPGKDVALAGFGVNAAGSTFIAGSALLTLLLTIFLSL*

SD09738.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13359-PA 479 GF13359-PA 1..479 1..488 2047 82.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23028-PA 488 GG23028-PA 1..488 1..488 2533 96.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22655-PA 504 GH22655-PA 27..477 22..469 1487 67.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:14
Subject Length Description Subject Range Query Range Score Percent Strand
uzip-PB 488 CG3533-PB 1..488 1..488 2568 100 Plus
uzip-PA 488 CG3533-PA 1..488 1..488 2568 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14153-PA 491 GI14153-PA 1..491 1..488 1705 68 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17642-PA 488 GL17642-PA 1..478 1..478 2057 82.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17506-PA 492 GA17506-PA 1..482 1..478 2037 82 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11920-PA 488 GM11920-PA 1..488 1..488 2587 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11916-PA 488 GD11916-PA 1..488 1..488 2589 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21020-PA 496 GJ21020-PA 18..494 14..487 1687 69.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21574-PA 490 GK21574-PA 1..485 6..487 1922 77.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14462-PA 488 GE14462-PA 1..474 1..474 2370 97 Plus

SD09738.hyp Sequence

Translation from 275 to 1741

> SD09738.hyp
MTSNSCLISLGLLLVLIQILAPAKAAEHSVFTHKNASSVLGQLVTSSTLV
WESYDPKDATQLQFAVEGGKYVTEDEHYPMYVCRVPIDGIQVSGHTEKIL
QRHVCLAAHYKHGKYDNFDVLMNKGHLGKVGWRHWRKFDAGVPVGAIRIG
DDSYIGRHRAPSQPNKDGVVTHWGADFNLGHLEPVGLGKIRVIEAEREKY
YDDGEVLVETEPFRYELRDIKLDRLRTDIQENMTELVTRKLENLEDKYST
VETILSYTFNYNQYWGSHEGVARGLPTKIFEKDEAVPAEINWALKHTEKR
SENKAVHTKLWPGTAINVTLRGNYVTLEAPYSGKLFAFYYGSDESVSRKI
SAEVRKSYLKEVKLEFSPVYWIENGTLVPTTTTTTTTSTSTTTHATTTST
NEPTPINEPPLVHMKDNGVQHSGPDTLEKTLHDSPSSNELNSHEAPENMS
SDPGKDVALAGFGVNAAGSTFIAGSALLTLLLTIFLSL*

SD09738.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:14
Subject Length Description Subject Range Query Range Score Percent Strand
uzip-PB 488 CG3533-PB 1..488 1..488 2568 100 Plus
uzip-PA 488 CG3533-PA 1..488 1..488 2568 100 Plus