Clone SD09769 Report

Search the DGRC for SD09769

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:97
Well:69
Vector:pOT2
Associated Gene/TranscriptNdfip-RA
Protein status:SD09769.pep: gold
Preliminary Size:2140
Sequenced Size:2107

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG32177 2001-11-09 Blastp of sequenced clone
CG32177 2008-04-29 Release 5.5 accounting
CG32177 2008-08-15 Release 5.9 accounting
Krn 2008-08-15 Release 5.9 accounting
CG32177 2008-12-18 5.12 accounting
Krn 2008-12-18 5.12 accounting

Clone Sequence Records

SD09769.complete Sequence

2107 bp (2107 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069849

> SD09769.complete
TGCATTTGTTTTTTTCGCTTCGCTCGCGAAGTGAGCCCAGTTTTAAATTA
TTTAAATTGCGTATAGTGAAGCCACTTGAAAGCGAAACGCCTACTGTCGC
AGTTCTGCCAAAAAACCAACAGTATTAGCTGTGTGCGTGTTTGGCAACAA
CAAGTCAACAAAATTCGAACAAAATCAATAAAACGGAAACGTGAGAGAGC
GCTGCGCAAAAGAGAAAAGCGAACGCAATCGCAATCGACCAACGCATAGA
AGAAAACAAGTCATGCCGCACAACAACCAGCCGTCTCCCGGGGATGATCA
GTTGGGACCGCCAAAGGCGGACTTCAGTGCTCCGCCACCGTACGAGGCGA
ACGTTGGCCATGGCCAGCAGGTAGCACTGCCGGCTCAGATGCCACCGCTG
GCCTTGGCCACACCCGATCCCAGTCAGATCCCGATACAGATGCAAGTGCA
GCTGCCGAGCCAGGCGGACCTTATGAATGCACAACTGCCGCCAGAAATAC
ACGGGAAGTTGCCCACGTACGAGGAGGTTCAAATGGAAAAGTCGCTGAAC
GGAGAGCTGCCGCCCGCCTTTTTGACTTTACCCTCCTCGCAGCAGCTACC
GCCGCCGCCGAATCCGCTACTGCCGCCAAATCCGCTGCGCGATGGAGCCG
CTGCTGTGCGATCTGCCCAGCCGGCACTCACGTTCATCGCCATCGATGCC
AGCGATCCGGAAAATAGTCTGTCCACCACCGACAACTTGCTCGGCACGGA
CATCATGTTCATCACGGCCTTCATTGTGGCCTTTTTGTTTAACTGGATCG
GCTTCCTGATGCTCACCTGTTTCTGTCACACAATCGCCGCCCGATATGGA
GCATTGTCGGGATTCGGATTGTCGCTGGCTAAATGGACGCTGATCGTGAA
GCACTCGACGGACTTGGCCTCGCACGAAAACTCCTGGCTCTGGTGGCTGA
TCTGTGCCTTTGGCTTCCTGATCAGCATACGCGCTTTAATACAGTATGTC
AGCATCAAGCGATCGTGGCGCCTCCTTTCCGCCTCTGCCCAGGAACGGCT
GCTATTCTTTTACTAGGTGCACCTGGAGGCTTTCCAGTGGTCGTCTTGTA
AATACGTTGTGGGTGGCTAGGAGGCTCGAATGCTACCAACCAACCGATCC
CAACACCCTCTATTCCCCAGACCCAGCACACGAAAAATCAACGCGAACTT
ATTTTGCAGAGTTCTCGAAATCACTATGGACTTGAAAGTATTCCCTCAAA
TGTATTAGTCAATCAATTTCTTTAAAATAGAAGTAATGTTATTCAAAAAT
ATACTTTGTATATCCGTTTACTACACTTTCAAGTCACAAACTTATTGGGA
TATCTCGCAAGTCCAAAATTGCATTAGCTTTCAAGAAAGTTTCAATTTTC
TTTTAAATACTAAATGTATTGAACAGTTTTACATTAAGCCAATTGTAAAT
TGTAAACGGTGCAGCGGCTTAGATGTTGCGAAGAAAATTCGATTTCGAGA
GCTATCCGAGTTGTGGGTTATCATTTTTTGTAGTTTCTGTGTTAACTAGA
GACGTTAAAAATGTGTGTTGAAAAGTGAAAGGCGAATGCATCTTCGCATC
TGCTCTCCCCCAATCGATTATAATTGTAAATGTATGTGAAATGTGTATGG
ATATATAAATATCTCACCCTAATTGATCCCTCTACACCCCCACAAAATCT
CCCTAGGCCTTTTAGTGGCGCCCATGCACTTGAAACAAAGACACAAAACA
AACCAAAAAATAAATGGGATACAAAATTATAAAGGGTCGAGATAGAAAAG
TATGCCACCCATATCTTTTGTTGAGCCCATTTTACGCTGTGGTACTTAAT
TAATTAACTACACAAGAGCCAGCAGTAATACGAATGCTAAACACACACAA
ACAACTATTGCTAGAACATATGATTATTGCCTATTATAACGTTTAATTAC
TATGTTTAATCCCTTTGTATGTAAATCAAACGATGCTTATGCATTGCAAA
GGGTGCAGAGTCGCATTATCTGCGCCAGTTTTATGCAAATTCAATAAAAT
CGAATGATGTCATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAA

SD09769.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG32177-RA 2093 CG32177-RA 26..2093 1..2068 10325 99.9 Plus
Krn-RA 1348 Krn-RA 26..285 1..260 1300 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17637037..17638843 2065..259 9035 100 Minus
chr3L 24539361 chr3L 17643587..17643846 260..1 1300 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:53:13 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17647439..17649248 2068..259 9035 99.9 Minus
3L 28110227 3L 17653992..17654251 260..1 1300 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17640539..17642348 2068..259 9035 99.9 Minus
3L 28103327 3L 17647092..17647351 260..1 1300 100 Minus
Blast to na_te.dros performed 2019-03-15 23:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
NOF 4347 NOF FB 4347bp Derived from X51937 (g8297) (Rel. 44, Last updated, Version 6). 491..634 183..36 118 55.4 Minus

SD09769.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:08:19 Download gff for SD09769.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17637037..17638841 261..2065 100 <- Minus
chr3L 17643587..17643846 1..260 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:05:34 Download gff for SD09769.complete
Subject Subject Range Query Range Percent Splice Strand
CG32177-RA 1..804 263..1066 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:30:26 Download gff for SD09769.complete
Subject Subject Range Query Range Percent Splice Strand
CG32177-RA 1..804 263..1066 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:28:39 Download gff for SD09769.complete
Subject Subject Range Query Range Percent Splice Strand
Ndfip-RA 1..804 263..1066 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:58:03 Download gff for SD09769.complete
Subject Subject Range Query Range Percent Splice Strand
CG32177-RA 1..804 263..1066 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:20:11 Download gff for SD09769.complete
Subject Subject Range Query Range Percent Splice Strand
Ndfip-RA 1..804 263..1066 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:08:23 Download gff for SD09769.complete
Subject Subject Range Query Range Percent Splice Strand
CG32177-RA 26..2090 1..2065 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:30:26 Download gff for SD09769.complete
Subject Subject Range Query Range Percent Splice Strand
CG32177-RA 26..2090 1..2065 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:28:39 Download gff for SD09769.complete
Subject Subject Range Query Range Percent Splice Strand
Ndfip-RA 30..2094 1..2065 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:58:03 Download gff for SD09769.complete
Subject Subject Range Query Range Percent Splice Strand
CG32177-RA 26..2090 1..2065 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:20:11 Download gff for SD09769.complete
Subject Subject Range Query Range Percent Splice Strand
Ndfip-RA 30..2094 1..2065 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:08:19 Download gff for SD09769.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17647442..17649246 261..2065 99 <- Minus
3L 17653992..17654251 1..260 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:08:19 Download gff for SD09769.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17647442..17649246 261..2065 99 <- Minus
3L 17653992..17654251 1..260 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:08:19 Download gff for SD09769.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17647442..17649246 261..2065 99 <- Minus
3L 17653992..17654251 1..260 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:28:39 Download gff for SD09769.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17640542..17642346 261..2065 99 <- Minus
arm_3L 17647092..17647351 1..260 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:34:26 Download gff for SD09769.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17640542..17642346 261..2065 99 <- Minus
3L 17647092..17647351 1..260 100   Minus

SD09769.pep Sequence

Translation from 262 to 1065

> SD09769.pep
MPHNNQPSPGDDQLGPPKADFSAPPPYEANVGHGQQVALPAQMPPLALAT
PDPSQIPIQMQVQLPSQADLMNAQLPPEIHGKLPTYEEVQMEKSLNGELP
PAFLTLPSSQQLPPPPNPLLPPNPLRDGAAAVRSAQPALTFIAIDASDPE
NSLSTTDNLLGTDIMFITAFIVAFLFNWIGFLMLTCFCHTIAARYGALSG
FGLSLAKWTLIVKHSTDLASHENSWLWWLICAFGFLISIRALIQYVSIKR
SWRLLSASAQERLLFFY*

SD09769.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20060-PA 266 GF20060-PA 1..266 1..267 1149 91.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15795-PA 267 GG15795-PA 1..267 1..267 1378 98.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15348-PA 267 GH15348-PA 1..267 1..267 955 78.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
Ndfip-PA 267 CG32177-PA 1..267 1..267 1413 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12951-PA 263 GI12951-PA 1..263 1..267 946 79 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25228-PA 261 GL25228-PA 1..261 1..267 1019 85.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16734-PA 261 GA16734-PA 1..261 1..267 1023 86.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24319-PA 251 GM24319-PA 1..251 1..267 1258 92.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12389-PA 267 GD12389-PA 1..267 1..267 1380 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:58:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13095-PA 268 GJ13095-PA 1..268 1..267 928 75.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12334-PA 279 GK12334-PA 19..279 8..267 1032 84.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22132-PA 267 GE22132-PA 1..267 1..267 1372 98.5 Plus

SD09769.hyp Sequence

Translation from 262 to 1065

> SD09769.hyp
MPHNNQPSPGDDQLGPPKADFSAPPPYEANVGHGQQVALPAQMPPLALAT
PDPSQIPIQMQVQLPSQADLMNAQLPPEIHGKLPTYEEVQMEKSLNGELP
PAFLTLPSSQQLPPPPNPLLPPNPLRDGAAAVRSAQPALTFIAIDASDPE
NSLSTTDNLLGTDIMFITAFIVAFLFNWIGFLMLTCFCHTIAARYGALSG
FGLSLAKWTLIVKHSTDLASHENSWLWWLICAFGFLISIRALIQYVSIKR
SWRLLSASAQERLLFFY*

SD09769.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ndfip-PA 267 CG32177-PA 1..267 1..267 1413 100 Plus