Clone SD09850 Report

Search the DGRC for SD09850

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:98
Well:50
Vector:pOT2
Associated Gene/TranscriptCG3608-RA
Protein status:SD09850.pep: gold
Preliminary Size:1782
Sequenced Size:1731

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3608 2001-01-01 Release 2 assignment
CG3608 2002-05-16 Blastp of sequenced clone
CG3608 2003-01-01 Sim4 clustering to Release 3
CG3608 2008-04-29 Release 5.5 accounting
CG3608 2008-08-15 Release 5.9 accounting
CG3608 2008-12-18 5.12 accounting

Clone Sequence Records

SD09850.complete Sequence

1731 bp (1731 high quality bases) assembled on 2002-05-16

GenBank Submission: AY118660

> SD09850.complete
TGGAAGCGCATCAATTTAATCACAGACTTTGGAATTTCAACACCTACGCG
CCGTTGAACTCCGGCGCTATCTGTAGTGCACCATATCGACCGGAGGAATG
CTGTTGCGTCGCGTTCTGGGCTACGGAGTAGTCGGCGCCGGACTGGCCTC
CGCCGGCTGGAGCCTGCACACCAACGACTACGATCCCAACTCACTCGGAA
TCGTCCGGCTGTCGCGATCCGCCGCCGCCGTCGTGGACGTGGCACTCACC
TACAAGCGGGAACTTTACTACAAGGAATGGGATAAGGAGACGCCCGAGTA
CAAGGCGGAAAAGAGCCGGGTCCACAAGATAGCCGCCGAGAAGCTACTTC
AGCTGATCTGCATAAACAAGGGTGTCTACATCAAGGTGGGCCAGCACATA
GGGGCCTTGGAGTACCTGCTACCCAAGGAGTTTGTGCAGACCATGAAGGT
ACTTCACTCCGATGCGCCGCAAAACCCCATTGAGGACCTGTATAAGGTAA
TCCGACAGGATCTGCACTGCAATCCGGAAGAAATCTTCGACAGCTTCGAG
AGGGAGCCGCTGGGAACTGCTTCCCTTGCCCAGGTACATAAGGCGCGCCT
CAAGACCGGCGAGCTGGTGGCCGTGAAGGTGCAACATCCCTACGTTAAGG
GTAACTCCCGCGTTGACATGAAGACCATGGAACTGGCCGTTAATGTGCTG
GCTCGGATATTTCCCGACTTCAAGATCCACTGGCTGGTTGAGGAGTCTAA
AAAGAACTTGCCAATCGAACTCGATTTCCTAAACGAGGGACGTAACGCCG
AGAAAGTAGCCAAGCAGTTCAAGAAGTACTCGTGGCTTCGGGTGCCCAAG
ATATACTGGAAATATAGCTCTTCTCGAGTCCTAGTCATGGAGTACCTGGA
GGGTGGGCATGTCACGGACTTGGACTACATACGGCGAAACAAAATTGACT
CATTTGCGGTGGCCAATCGCATTGGGCAGCTCTACTCCGAGATGATCTTC
CGCACCGGTTTCGTGCACAGCGATCCGCATCCAGGAAACATCTTGGTAAG
ACGCACGCCGGAAAACAGTCTGGAGATAGTTCTGCTGGATCACGGGCTGT
ATGCAAATCTGACGGACAAGTTTCGGTACGATTATTCCAATCTCTGGCTG
AGTATCCTTAAGGTGGACCGCAAAGCGATGCGACAACACAGTGAGCAGCT
GGGAATTAAGGGCGATCTGTACGGTCTTTTCGCATGCATGGTGACGGGAC
GACCTTGGGAGACGGTGATGCAGGGCCTGACCAAAGTCAAATATTCCAAA
GAAGAGAAGAACACGCTGCAAAACAACACGTCCCTGGTGCTGCCGCACAT
TTCCGACGTATTGGAGCAGGTGGACCGTCAGATGCTGCTCATTCTGAAGA
CAAATGACTTGATCCGCGGAATTGAGTCCACGCTGCGCACGCAGAACCGG
ATGACCGCCTTCTGGGTTATGTCCAAGTGCTGTGTTCAATCTTCGTACGC
TGAACAGCGAGCCAAGCAGTCTGATTCCGGATCCTCGCGAATCCTGTGGC
TGCGGGTGCGCGAGCGATGGGAGCTTTTCAAGCTCAACTGCTACTACCTC
TACCTGGGACTGATTAATTTTGGTTTCCTTGAAGCTCTCAAGCAGGTTAT
TTAGACTAAACGGTGTCCCCCAATTAAAAGTACAAAACTCTTCACGAGGA
AAGGGAAAAAAAAAAAAAAAAAAAAAAAAAA

SD09850.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3608-RA 1972 CG3608-RA 264..1971 1..1708 8540 100 Plus
CG3608.a 1732 CG3608.a 30..1732 1..1706 8460 99.8 Plus
CG3608.c 1825 CG3608.c 207..1825 90..1708 8095 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20498044..20499165 90..1211 5565 99.7 Plus
chr2R 21145070 chr2R 20499386..20499786 1305..1705 2005 100 Plus
chr2R 21145070 chr2R 20499229..20499326 1209..1306 490 100 Plus
chr2R 21145070 chr2R 20497611..20497699 1..89 445 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:53:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:54:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24612167..24613288 90..1211 5610 100 Plus
2R 25286936 2R 24613506..24613909 1305..1708 2020 100 Plus
2R 25286936 2R 24613349..24613446 1209..1306 490 100 Plus
2R 25286936 2R 24611734..24611822 1..89 445 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24613366..24614487 90..1211 5610 100 Plus
2R 25260384 2R 24614705..24615108 1305..1708 2020 100 Plus
2R 25260384 2R 24614548..24614645 1209..1306 490 100 Plus
2R 25260384 2R 24612933..24613021 1..89 445 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:54:03 has no hits.

SD09850.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:55:18 Download gff for SD09850.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20497611..20497699 1..89 100 -> Plus
chr2R 20498044..20499164 90..1210 99 -> Plus
chr2R 20499231..20499326 1211..1306 100 -> Plus
chr2R 20499388..20499786 1307..1705 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:05:39 Download gff for SD09850.complete
Subject Subject Range Query Range Percent Splice Strand
CG3608-RA 1..1557 98..1654 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:50:22 Download gff for SD09850.complete
Subject Subject Range Query Range Percent Splice Strand
CG3608-RA 1..1557 98..1654 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:28:07 Download gff for SD09850.complete
Subject Subject Range Query Range Percent Splice Strand
CG3608-RA 1..1557 98..1654 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:42:57 Download gff for SD09850.complete
Subject Subject Range Query Range Percent Splice Strand
CG3608-RA 1..1557 98..1654 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:09 Download gff for SD09850.complete
Subject Subject Range Query Range Percent Splice Strand
CG3608-RA 1..1557 98..1654 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:27:41 Download gff for SD09850.complete
Subject Subject Range Query Range Percent Splice Strand
CG3608-RA 30..1734 1..1705 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:50:22 Download gff for SD09850.complete
Subject Subject Range Query Range Percent Splice Strand
CG3608-RA 30..1734 1..1705 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:07 Download gff for SD09850.complete
Subject Subject Range Query Range Percent Splice Strand
CG3608-RA 32..1736 1..1705 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:42:57 Download gff for SD09850.complete
Subject Subject Range Query Range Percent Splice Strand
CG3608-RA 30..1734 1..1705 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:09 Download gff for SD09850.complete
Subject Subject Range Query Range Percent Splice Strand
CG3608-RA 32..1736 1..1705 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:55:18 Download gff for SD09850.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24611734..24611822 1..89 100 -> Plus
2R 24612167..24613287 90..1210 100 -> Plus
2R 24613351..24613446 1211..1306 100 -> Plus
2R 24613508..24613906 1307..1705 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:55:18 Download gff for SD09850.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24611734..24611822 1..89 100 -> Plus
2R 24612167..24613287 90..1210 100 -> Plus
2R 24613351..24613446 1211..1306 100 -> Plus
2R 24613508..24613906 1307..1705 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:55:18 Download gff for SD09850.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24611734..24611822 1..89 100 -> Plus
2R 24612167..24613287 90..1210 100 -> Plus
2R 24613351..24613446 1211..1306 100 -> Plus
2R 24613508..24613906 1307..1705 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:07 Download gff for SD09850.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20499257..20499345 1..89 100 -> Plus
arm_2R 20499690..20500810 90..1210 100 -> Plus
arm_2R 20500874..20500969 1211..1306 100 -> Plus
arm_2R 20501031..20501429 1307..1705 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:15:18 Download gff for SD09850.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24613384..24614504 90..1210 100 -> Plus
2R 24614568..24614663 1211..1306 100 -> Plus
2R 24614725..24615123 1307..1705 100   Plus
2R 24612951..24613039 1..89 100 -> Plus

SD09850.pep Sequence

Translation from 97 to 1653

> SD09850.pep
MLLRRVLGYGVVGAGLASAGWSLHTNDYDPNSLGIVRLSRSAAAVVDVAL
TYKRELYYKEWDKETPEYKAEKSRVHKIAAEKLLQLICINKGVYIKVGQH
IGALEYLLPKEFVQTMKVLHSDAPQNPIEDLYKVIRQDLHCNPEEIFDSF
EREPLGTASLAQVHKARLKTGELVAVKVQHPYVKGNSRVDMKTMELAVNV
LARIFPDFKIHWLVEESKKNLPIELDFLNEGRNAEKVAKQFKKYSWLRVP
KIYWKYSSSRVLVMEYLEGGHVTDLDYIRRNKIDSFAVANRIGQLYSEMI
FRTGFVHSDPHPGNILVRRTPENSLEIVLLDHGLYANLTDKFRYDYSNLW
LSILKVDRKAMRQHSEQLGIKGDLYGLFACMVTGRPWETVMQGLTKVKYS
KEEKNTLQNNTSLVLPHISDVLEQVDRQMLLILKTNDLIRGIESTLRTQN
RMTAFWVMSKCCVQSSYAEQRAKQSDSGSSRILWLRVRERWELFKLNCYY
LYLGLINFGFLEALKQVI*

SD09850.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12996-PA 518 GF12996-PA 1..518 1..518 2644 94 Plus
Dana\GF25249-PA 558 GF25249-PA 44..466 11..442 634 33 Plus
Dana\GF20885-PA 681 GF20885-PA 298..584 80..370 209 25 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22994-PA 518 GG22994-PA 1..518 1..518 2715 97.3 Plus
Dere\GG15486-PA 557 GG15486-PA 67..465 36..442 683 35.8 Plus
Dere\GG19534-PA 661 GG19534-PA 278..564 80..370 199 24.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20324-PA 441 GH20324-PA 1..440 2..441 2105 88.6 Plus
Dgri\GH14836-PA 515 GH14836-PA 1..425 7..442 672 34.1 Plus
Dgri\GH20325-PA 65 GH20325-PA 1..65 452..518 254 76.5 Plus
Dgri\GH17620-PA 692 GH17620-PA 309..594 80..369 208 25.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
Adck-PB 518 CG3608-PB 1..518 1..518 2693 100 Plus
Adck-PA 518 CG3608-PA 1..518 1..518 2693 100 Plus
CG7616-PB 557 CG7616-PB 36..465 4..442 672 34.8 Plus
CG7616-PA 557 CG7616-PA 36..465 4..442 672 34.8 Plus
Coq8-PA 661 CG32649-PA 278..563 80..369 208 24.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19996-PA 515 GI19996-PA 1..515 2..518 2427 87.5 Plus
Dmoj\GI13688-PA 559 GI13688-PA 38..471 5..444 631 32.4 Plus
Dmoj\GI16276-PA 692 GI16276-PA 309..595 80..370 196 24 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10232-PA 517 GL10232-PA 1..517 1..518 2547 90.9 Plus
Dper\GL22769-PA 559 GL22769-PA 43..466 10..442 646 33.1 Plus
Dper\GL22961-PA 661 GL22961-PA 278..564 80..370 203 24.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17555-PA 517 GA17555-PA 1..517 1..518 2540 90.7 Plus
Dpse\GA20483-PA 559 GA20483-PA 43..466 10..442 647 33.1 Plus
Dpse\GA17042-PA 661 GA17042-PA 278..564 80..370 202 24.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11887-PA 518 GM11887-PA 1..518 1..518 2728 97.9 Plus
Dsec\GM25258-PA 557 GM25258-PA 67..465 36..442 675 35.8 Plus
Dsec\GM11527-PA 661 GM11527-PA 278..564 80..370 214 25.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:03:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11885-PA 518 GD11885-PA 1..518 1..518 2736 98.3 Plus
Dsim\GD14292-PA 557 GD14292-PA 36..465 4..442 684 34.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21245-PA 515 GJ21245-PA 1..515 2..518 2435 87.8 Plus
Dvir\GJ14030-PA 554 GJ14030-PA 39..506 7..492 654 32 Plus
Dvir\GJ16920-PA 681 GJ16920-PA 298..584 80..370 207 25 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21422-PA 518 GK21422-PA 2..518 1..518 2426 85.9 Plus
Dwil\GK20341-PA 468 GK20341-PA 9..381 67..442 624 33.2 Plus
Dwil\GK10272-PA 695 GK10272-PA 312..598 80..370 210 24.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:03:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14431-PA 520 GE14431-PA 1..520 1..518 2700 97.1 Plus
Dyak\GE21796-PA 557 GE21796-PA 67..522 36..503 681 34 Plus
Dyak\GE16192-PA 661 GE16192-PA 278..564 80..370 205 24.7 Plus

SD09850.hyp Sequence

Translation from 97 to 1653

> SD09850.hyp
MLLRRVLGYGVVGAGLASAGWSLHTNDYDPNSLGIVRLSRSAAAVVDVAL
TYKRELYYKEWDKETPEYKAEKSRVHKIAAEKLLQLICINKGVYIKVGQH
IGALEYLLPKEFVQTMKVLHSDAPQNPIEDLYKVIRQDLHCNPEEIFDSF
EREPLGTASLAQVHKARLKTGELVAVKVQHPYVKGNSRVDMKTMELAVNV
LARIFPDFKIHWLVEESKKNLPIELDFLNEGRNAEKVAKQFKKYSWLRVP
KIYWKYSSSRVLVMEYLEGGHVTDLDYIRRNKIDSFAVANRIGQLYSEMI
FRTGFVHSDPHPGNILVRRTPENSLEIVLLDHGLYANLTDKFRYDYSNLW
LSILKVDRKAMRQHSEQLGIKGDLYGLFACMVTGRPWETVMQGLTKVKYS
KEEKNTLQNNTSLVLPHISDVLEQVDRQMLLILKTNDLIRGIESTLRTQN
RMTAFWVMSKCCVQSSYAEQRAKQSDSGSSRILWLRVRERWELFKLNCYY
LYLGLINFGFLEALKQVI*

SD09850.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG3608-PB 518 CG3608-PB 1..518 1..518 2693 100 Plus
CG3608-PA 518 CG3608-PA 1..518 1..518 2693 100 Plus
CG7616-PB 557 CG7616-PB 36..465 4..442 672 34.8 Plus
CG7616-PA 557 CG7616-PA 36..465 4..442 672 34.8 Plus
CG32649-PA 661 CG32649-PA 278..563 80..369 208 24.7 Plus