Clone SD09884 Report

Search the DGRC for SD09884

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:98
Well:84
Vector:pOT2
Associated Gene/TranscriptMes2-RB
Protein status:SD09884.pep: gold
Preliminary Size:2273
Sequenced Size:2287

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11100 2001-01-01 Release 2 assignment
CG11100 2001-07-04 Blastp of sequenced clone
CG11100 2003-01-01 Sim4 clustering to Release 3
Mes2 2008-04-29 Release 5.5 accounting
Mes2 2008-08-15 Release 5.9 accounting
Mes2 2008-12-18 5.12 accounting

Clone Sequence Records

SD09884.complete Sequence

2287 bp (2287 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052141

> SD09884.complete
TGAGAGGGTAGCAGCCCCGTTATCAGCCGACCGCGATCGCGTCCGAACTA
AAGAGTACTGTGGAGCCCTGGCCAGTTCAAGCCTTCAAATCCTCCAGAAC
ATTCTGATGGCGCCCGTGAGCGGCTGTTTGCCCACCGCCACCCACTCGCT
GCAGGACATGAGTGCTGCCGCCGCGGCAATCGCTCTTGACATGAAGCCCA
AGTTGGAGCCCCACCCCCTGGCCGCCGCAACTGCCATGCCCTCTCAGAAG
ATAAAGAAATTGGTTCGGCGCAACGCCTCCGACAAGCTGAAGCTCATCCA
AATGGTGCACGACAATCCAATTCTCTGGGACTCCCGTCTCCCGAATTTCA
AGGGCGCCGAAGAAGAAAAGAACCGAGCCTGGGAGCACATAGGCCGCGAG
TTCAACGCTCCCGGGCGTCGCGTTGCACGGGCCTTCAAGTCCTTGAGGGA
ATCCTACCGCCGTGAACTCGCCCACGTCAAGCTAATGGGCAATGGCTTCA
AGCCCAAGTGGAGTCTCTATGAGGCCATGGATTTCCTGCGCGATGTCATC
AGAGAACGAAAGGGCGCTTCGCATGCAACCGATCTAAGCCTGACAACCTA
TGGCCATATTAACAATAACAACAACAACAACAACAACAGTAACAGCTTGG
CTGCAGGGGGAAAGGCAATGACCCTGAAGCTGTCCAATTCCTTTAACGAG
TCCGCCTCAGTGTTAAATCTCTCAAAGTGCTCCTCGCTCAATGTAAGCGA
CGATCACTACTATTGCGACTACTATGTGAAGCCGGAGCTGGATCTCTCGG
TGGGCGGTGGGGCCGGAAGTAGCACAAGTGGGAGTAGCTCCGGCGGCGGG
CCACTTCCTCTGCCCGCTCACCAGGCTCACAACGACAGTCGGGTGAGCTC
AACGAGAAACGAGCAAAGGGCACAGCATCACAGCTATGAAGACATGGACG
ACAGCTCGATACGCAGCGGGGACGAAGATATCGCCCACGCATCCGACGTA
GTGGAGGAGTTGGATGCCATCGATGCAGATTTCCCTTATCCTCTGATTCT
GGATTCCAACTCACGCGGTAGCCCCAATGTTGGTGTGGACGATGTGGTCA
TGTCCCGCAAGCTTCGCCGTAACGTCGATCAAGATGTTTTGGAGGAAGGA
AACGGTCACGGCGATGCGGTTATCGATGGTGACGACTACGAAGAACAAAT
GCTGCAACAGCACCGCCATCTCCGGCAGCAACAGGGCGTCGCAAGCGGAG
GGTTGGATCTGCCGCCCCCACAAACTGTACGTGAGGTTTTGAACTCCAAG
TTCTGCGGCTTTATTTCAGCCAAGCTAAACAGCATGGAGGACTCGGACGC
GGACAATTTAATGAATCGCATTCTTCTCTTACTGGTTCAAGTGCAGCAGT
GCGAAGGGTCCACGAAATAGACAGCGGAGGAGAAGAGCGCTAAGTGTACG
GGTGTAATTATAGTAGCCAAAAAAAAGTACATAATGGAATGATGTTGCTG
CTCAGAGCACTTATAACTGAATTTTCTTGCCATTATATATTACTTTCCTA
AAGAAATACAAATTTACTTGCCAATGCCAAATCTGTGCCATACCAAAAGG
ATCAATCAAATATGAATGATTTTCTAAAACATTCTCTAATTTTTTCGCTC
CTATTAACAAAAATGAACCAAACTCAACGAAAAGACAACACAAAGACGTA
AACCAAGAAATAGCAAAATAAGAAACATAGATTAATTAAGCTTTAAATGT
TAATTTCGTTTTAAGTCGATCAACTGTAGTTCATACTCATGCCAACGTCT
CATCACATGAAACAATTCTTTATATAACCTTTTATTTTACCCAGATTATA
TCGCCTATATATAATATAACTTCTTGTTAAGTTGAAAACGTAGAAATTAG
AAAAGAAAAGTTTTTAACTTAAAAAAGCGAGCATATTACTCATAGTTTCA
TATACAGCGATATGAATATTAACAATATCTGAACACTAAATGAGAACAGC
TTTAACAATTTGTCGTTTTTGAATAAAACACCATCTTTGGCAGTAATGCT
TTGCTATCGATGTACGCAGACAATGTTTTGGCCATTCAGCCCAATTTAAA
TCAAAAATTTTGAAAAAGTTTTCCGTTTTTCGGTGGATATTGAGTAATAA
AGTACCTTTAAATATAAAAAATCAAACGTGTCTACCGAACATGAACATAA
TCAGCCGATTTTTATTAATTTAAATCCGAAATTATTTATAGTCAGGAATA
AATATTTTATATCGATACCAAAAAAAAAAAAAAAAAA

SD09884.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:25:36
Subject Length Description Subject Range Query Range Score Percent Strand
Mes2-RB 2477 Mes2-RB 151..2423 1..2272 11325 99.9 Plus
Mes2.a 2183 Mes2.a 23..1298 1..1276 6380 100 Plus
Mes2.a 2183 Mes2.a 1299..2180 1392..2272 4370 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 22939454..22941162 562..2269 8495 99.9 Plus
chr3L 24539361 chr3L 22935192..22935493 261..562 1510 100 Plus
chr3L 24539361 chr3L 22934603..22934862 1..260 1300 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:53:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22950532..22952243 562..2272 8510 99.9 Plus
3L 28110227 3L 22946270..22946571 261..562 1510 100 Plus
3L 28110227 3L 22945681..22945940 1..260 1300 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 22943632..22945343 562..2272 8520 99.9 Plus
3L 28103327 3L 22939370..22939671 261..562 1510 100 Plus
3L 28103327 3L 22938781..22939040 1..260 1300 100 Plus
Blast to na_te.dros performed 2019-03-15 23:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 801..1016 1526..1739 123 54.5 Plus
transib3 2883 transib3 TRANSIB3 2883bp 689..755 1842..1909 121 66.2 Plus

SD09884.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:24:50 Download gff for SD09884.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 22934603..22934862 1..260 100 -> Plus
chr3L 22935192..22935492 261..561 100 -> Plus
chr3L 22939454..22941162 562..2269 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:05:42 Download gff for SD09884.complete
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 1..1314 107..1420 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:11:34 Download gff for SD09884.complete
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 1..1314 107..1420 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:27:06 Download gff for SD09884.complete
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 1..1314 107..1420 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:42:34 Download gff for SD09884.complete
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 1..1314 107..1420 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:33:11 Download gff for SD09884.complete
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 1..1314 107..1420 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:03:12 Download gff for SD09884.complete
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 23..2292 1..2269 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:11:33 Download gff for SD09884.complete
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 23..2292 1..2269 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:27:06 Download gff for SD09884.complete
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 25..2294 1..2269 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:42:34 Download gff for SD09884.complete
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 23..2292 1..2269 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:33:11 Download gff for SD09884.complete
Subject Subject Range Query Range Percent Splice Strand
Mes2-RB 25..2294 1..2269 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:24:50 Download gff for SD09884.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22946270..22946570 261..561 100 -> Plus
3L 22945681..22945940 1..260 100 -> Plus
3L 22950532..22952240 562..2269 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:24:50 Download gff for SD09884.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22946270..22946570 261..561 100 -> Plus
3L 22945681..22945940 1..260 100 -> Plus
3L 22950532..22952240 562..2269 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:24:50 Download gff for SD09884.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22946270..22946570 261..561 100 -> Plus
3L 22945681..22945940 1..260 100 -> Plus
3L 22950532..22952240 562..2269 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:27:06 Download gff for SD09884.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22938781..22939040 1..260 100 -> Plus
arm_3L 22939370..22939670 261..561 100 -> Plus
arm_3L 22943632..22945340 562..2269 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:20:15 Download gff for SD09884.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22938781..22939040 1..260 100 -> Plus
3L 22939370..22939670 261..561 100 -> Plus
3L 22943632..22945340 562..2269 99   Plus

SD09884.hyp Sequence

Translation from 0 to 1419

> SD09884.hyp
ERVAAPLSADRDRVRTKEYCGALASSSLQILQNILMAPVSGCLPTATHSL
QDMSAAAAAIALDMKPKLEPHPLAAATAMPSQKIKKLVRRNASDKLKLIQ
MVHDNPILWDSRLPNFKGAEEEKNRAWEHIGREFNAPGRRVARAFKSLRE
SYRRELAHVKLMGNGFKPKWSLYEAMDFLRDVIRERKGASHATDLSLTTY
GHINNNNNNNNNSNSLAAGGKAMTLKLSNSFNESASVLNLSKCSSLNVSD
DHYYCDYYVKPELDLSVGGGAGSSTSGSSSGGGPLPLPAHQAHNDSRVSS
TRNEQRAQHHSYEDMDDSSIRSGDEDIAHASDVVEELDAIDADFPYPLIL
DSNSRGSPNVGVDDVVMSRKLRRNVDQDVLEEGNGHGDAVIDGDDYEEQM
LQQHRHLRQQQGVASGGLDLPPPQTVREVLNSKFCGFISAKLNSMEDSDA
DNLMNRILLLLVQVQQCEGSTK*

SD09884.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
Mes2-PB 437 CG11100-PB 1..437 36..472 2269 100 Plus
Mes2-PC 372 CG11100-PC 1..372 101..472 1948 100 Plus
CG12768-PD 429 CG12768-PD 5..143 90..217 296 46.8 Plus
CG12768-PC 429 CG12768-PC 5..143 90..217 296 46.8 Plus
CG12768-PB 429 CG12768-PB 5..143 90..217 296 46.8 Plus

SD09884.pep Sequence

Translation from 106 to 1419

> SD09884.pep
MAPVSGCLPTATHSLQDMSAAAAAIALDMKPKLEPHPLAAATAMPSQKIK
KLVRRNASDKLKLIQMVHDNPILWDSRLPNFKGAEEEKNRAWEHIGREFN
APGRRVARAFKSLRESYRRELAHVKLMGNGFKPKWSLYEAMDFLRDVIRE
RKGASHATDLSLTTYGHINNNNNNNNNSNSLAAGGKAMTLKLSNSFNESA
SVLNLSKCSSLNVSDDHYYCDYYVKPELDLSVGGGAGSSTSGSSSGGGPL
PLPAHQAHNDSRVSSTRNEQRAQHHSYEDMDDSSIRSGDEDIAHASDVVE
ELDAIDADFPYPLILDSNSRGSPNVGVDDVVMSRKLRRNVDQDVLEEGNG
HGDAVIDGDDYEEQMLQQHRHLRQQQGVASGGLDLPPPQTVREVLNSKFC
GFISAKLNSMEDSDADNLMNRILLLLVQVQQCEGSTK*

SD09884.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11009-PA 442 GF11009-PA 1..442 1..437 1520 76.2 Plus
Dana\GF11008-PA 419 GF11008-PA 5..104 55..153 282 52 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16292-PA 436 GG16292-PA 1..436 1..437 1908 93.6 Plus
Dere\GG16290-PA 427 GG16290-PA 5..103 55..152 281 52.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16780-PA 509 GH16780-PA 14..506 9..433 1146 61.2 Plus
Dgri\GH16779-PA 456 GH16779-PA 5..103 55..152 282 52.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
Mes2-PB 437 CG11100-PB 1..437 1..437 2269 100 Plus
Mes2-PC 372 CG11100-PC 1..372 66..437 1948 100 Plus
CG12768-PD 429 CG12768-PD 5..143 55..182 296 46.8 Plus
CG12768-PC 429 CG12768-PC 5..143 55..182 296 46.8 Plus
CG12768-PB 429 CG12768-PB 5..143 55..182 296 46.8 Plus
CG12768-PA 429 CG12768-PA 5..143 55..182 296 46.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13441-PA 508 GI13441-PA 1..505 1..433 1208 60.9 Plus
Dmoj\GI13440-PA 450 GI13440-PA 5..103 55..152 282 52.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24980-PA 163 GL24980-PA 1..163 280..437 486 74.8 Plus
Dper\GL24979-PA 87 GL24979-PA 1..87 66..152 477 98.9 Plus
Dper\GL24977-PA 422 GL24977-PA 5..103 55..152 284 52.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:38:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10759-PA 457 GA10759-PA 1..457 1..437 1449 76.8 Plus
Dpse\GA11801-PA 419 GA11801-PA 5..103 55..152 285 52.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22483-PA 438 GM22483-PA 1..438 1..437 1937 94.8 Plus
Dsec\GM22482-PA 429 GM22482-PA 5..103 55..152 280 52.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:38:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15063-PA 438 GD15063-PA 1..438 1..437 2236 95.9 Plus
Dsim\GD15062-PA 429 GD15062-PA 5..103 55..152 280 52.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11803-PA 471 GJ11803-PA 15..470 10..435 1338 68.7 Plus
Dvir\GJ15440-PA 345 GJ15440-PA 15..151 10..167 523 70.9 Plus
Dvir\GJ15440-PA 345 GJ15440-PA 187..344 276..435 500 71.1 Plus
Dvir\GJ11802-PA 419 GJ11802-PA 5..113 55..162 282 48.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:38:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12966-PA 464 GK12966-PA 1..464 1..437 1297 68.1 Plus
Dwil\GK12934-PA 470 GK12934-PA 5..103 55..152 277 51.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Mes2-PA 436 GE22652-PA 1..436 1..437 1872 91.3 Plus
Dyak\GE22651-PA 408 GE22651-PA 1..408 29..437 1770 91 Plus
Dyak\GE15099-PA 103 GE15099-PA 5..103 55..152 282 52.5 Plus