Clone SD10002 Report

Search the DGRC for SD10002

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:100
Well:2
Vector:pOT2
Associated Gene/TranscriptCG5902-RA
Protein status:SD10002.pep: gold
Preliminary Size:2069
Sequenced Size:1950

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5902 2001-01-01 Release 2 assignment
CG5902 2002-05-20 Blastp of sequenced clone
CG5902 2003-01-01 Sim4 clustering to Release 3
CG5902 2008-04-29 Release 5.5 accounting
CG5902 2008-08-15 Release 5.9 accounting
CG5902 2008-12-18 5.12 accounting

Clone Sequence Records

SD10002.complete Sequence

1950 bp (1950 high quality bases) assembled on 2002-05-20

GenBank Submission: AY118445

> SD10002.complete
TGAACTCGTAAAAAAGTGTAAAATTTGTTTACATTGAAAAAAGGTAAAAA
ATTGTTCTTGAGGGCTACCTACGGTGCTCCCTGGCTCCTAGATGGGTCAG
CCAAGACAAAGGGCCGTGTGCATGTGTGGCGCGTAGCCCTTTATAAGTGC
GGGGGGTGGGGGGAACAGCCAGGGCGAACAAAGAGCAATTAATGCAATAG
GAGGAGGGGGGCTTTCTCCTCCGATTTTCCCCACTTCCCCGAATTTTCCA
ATAGAGGCTGTTGTGAAACCTAAGACGCATCAGCGGATCAGCGGACGCAA
TTCAATGAGGTGCTTATGAGCTAACTAGCAGCAGGACGGCAGCCAAGGAA
CACGGGGACGAGGTCTGGATCAGTTAGCAGGGAGCCAGGAATCACAGGCT
AGAGGTCAGCGCAAACTGGAGGGCAGCAGGTGACCTAGTTTACGCAGTAG
CAGACGATTAGAGGACTGGCGGCAGCGTTTCTGTGGCAACTCCTACTGGG
GCTGTTCTGTTGTGTTAATTGAACTTAGAGCATCAACGTGCACTGCCATT
AGTTGTAACCTCAATATACCTACCTAACGTAATTAGTGAACCAGTTCTGA
CACAGAACAGCATGTCCAACTCCCACTACAACAACTACCAGCAGCAGCAG
CCGCACTCCAGCAACGGAGATCCGGAATACCAGCACCAGCAGATGGTGCA
CCAGCCGCAACGGTTCTCCAACGGCCATGGCATGAAGACCGTCGCTGTGC
CAGACATGTGCCTGTTCTGCTTCGAGGTGCTTGACTGTGAGCTGAACAAC
GTCGATGGTCCATCGGTGCCGGTGTTTAGCAACGACGCCTACCCACTCTT
TGTCACCTGGAAGATTGGGCGTGACAAGAGGCTGCGTGGCTGCATTGGTA
CTTTTAGTGCAATGGAACTGCACCATGGTCTTCGGGAGTACGCCTTGACC
AGCGCCTTTAAGGACTCTAGATTTGCACCTATCTCTAGAGATGAGTTGCC
ACGGCTAACTGTCTCGGTCTCGATCCTGCAGAACTTCGAGGAGGCTCAGG
GCCACCTGGACTGGCAACTGGGCGTCCATGGCATCCGCATCGAGTTCCTC
ACAGAACGCGGCTGCAAGCGCACAGCCACCTATTTGCCGCAGGTGGCCAC
CGAACAGGGCTGGGACCAGCTGCAGACCATTGACTCACTCCTACGGAAGG
GCGGCTATCGGGCTGCCATAACTCCGGAGACGAGGAAGTCCATAAAGCTA
ACGCGCTACCGTTCGCAGGAGATCCAGATGCACTACAAGGAGTACCGCGA
GTACCAGGAGCGTCGCGCCCAGTTCGGCAAGGTGCAGTGCTAACAATTGG
ACAGGACGGCGGCGAGGCGATGATCCTGGCTTAGGGCAGGCCTGATGGCC
GTCGTCCTCCTGCTGCTGCTAGCTTTTGAGTTTGGCCCAGCTTGGCGGCC
GCTCGCTTAATTCAAGTTATGAGTTATTATATCTCCAGCATCAATTTTAA
GCCCTCAAAAATTCTCCAAAAACGCGCGTGAGATGAGCGTCTTTTACTAA
ATATACCATTTAATGCTTCAAATACTTAAGCGGCAGATCCGTAAGCAATT
TCGAATGAGAAACAGAATGAAAACAGAAAAGATTGTAAGCGCTATGTTGA
AACCCATTGCATTCGGATACACCGATCTATGTTGTAGCCGCAGCCTTGCT
GGTTTCTTTTTAAATCAAACACACACAAACTAAAACTAAACAAGCGTATA
TATGGGGATATATATTACCGAATCAATACAATACAAAATGCAGATATATA
ATTCACGTAAAATGTTCAGCAATTATATTATAGATTTAACAACTAAACCA
ATTACATTACTAATTCTAATTCTATGCGCATTAAATAAAGGTCGACCCCT
TCTGAGTCGCACAAGACAATGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA

SD10002.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5902-RC 2059 CG5902-RC 53..1978 1..1926 9585 99.8 Plus
CG5902-RA 2062 CG5902-RA 53..1981 1..1926 9530 99.6 Plus
CG5902.a 1828 CG5902.a 93..1747 272..1926 8245 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19810643..19812113 452..1922 7355 100 Plus
chr3R 27901430 chr3R 19810048..19810321 1..274 1370 100 Plus
chr3R 27901430 chr3R 19810405..19810585 273..453 905 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:53:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23987268..23988742 452..1926 7345 99.9 Plus
3R 32079331 3R 23986673..23986946 1..274 1355 99.6 Plus
3R 32079331 3R 23987030..23987210 273..453 905 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23728099..23729573 452..1926 7345 99.8 Plus
3R 31820162 3R 23727504..23727777 1..274 1355 99.6 Plus
3R 31820162 3R 23727861..23728041 273..453 905 100 Plus
Blast to na_te.dros performed 2019-03-15 16:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6712..6827 598..711 169 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6808..6925 602..716 166 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6674..6833 579..740 164 59.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2309..2421 602..711 160 64.9 Plus
roo 9092 roo DM_ROO 9092bp 1028..1161 604..735 159 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6688..6799 604..713 141 62.3 Plus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 693..793 1774..1870 134 67.3 Plus
roo 9092 roo DM_ROO 9092bp 1024..1157 581..711 130 59.3 Plus
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 307..429 1779..1898 121 58.9 Plus
McClintock 6450 McClintock McCLINTOCK 6450bp 1112..1235 1709..1851 113 61.8 Plus

SD10002.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:52:34 Download gff for SD10002.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19810048..19810321 1..274 100 -> Plus
chr3R 19810407..19810585 275..453 100 -> Plus
chr3R 19810645..19812113 454..1922 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:05:47 Download gff for SD10002.complete
Subject Subject Range Query Range Percent Splice Strand
CG5902-RA 1..732 612..1343 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:38:35 Download gff for SD10002.complete
Subject Subject Range Query Range Percent Splice Strand
CG5902-RC 1..732 612..1343 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:12:33 Download gff for SD10002.complete
Subject Subject Range Query Range Percent Splice Strand
CG5902-RB 1..732 612..1343 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:17 Download gff for SD10002.complete
Subject Subject Range Query Range Percent Splice Strand
CG5902-RA 1..732 612..1343 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:20:12 Download gff for SD10002.complete
Subject Subject Range Query Range Percent Splice Strand
CG5902-RB 1..732 612..1343 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:11:30 Download gff for SD10002.complete
Subject Subject Range Query Range Percent Splice Strand
CG5902-RA 1..1925 1..1922 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:38:35 Download gff for SD10002.complete
Subject Subject Range Query Range Percent Splice Strand
CG5902-RC 1..1922 1..1922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:12:33 Download gff for SD10002.complete
Subject Subject Range Query Range Percent Splice Strand
CG5902-RC 32..1953 1..1922 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:17 Download gff for SD10002.complete
Subject Subject Range Query Range Percent Splice Strand
CG5902-RA 1..1925 1..1922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:20:12 Download gff for SD10002.complete
Subject Subject Range Query Range Percent Splice Strand
CG5902-RC 32..1953 1..1922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:52:34 Download gff for SD10002.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23986673..23986946 1..274 99 -> Plus
3R 23987032..23987210 275..453 100 -> Plus
3R 23987270..23988738 454..1922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:52:34 Download gff for SD10002.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23986673..23986946 1..274 99 -> Plus
3R 23987032..23987210 275..453 100 -> Plus
3R 23987270..23988738 454..1922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:52:34 Download gff for SD10002.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23986673..23986946 1..274 99 -> Plus
3R 23987032..23987210 275..453 100 -> Plus
3R 23987270..23988738 454..1922 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:12:33 Download gff for SD10002.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19812754..19812932 275..453 100 -> Plus
arm_3R 19812395..19812668 1..274 99 -> Plus
arm_3R 19812992..19814460 454..1922 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:02:53 Download gff for SD10002.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23728101..23729569 454..1922 99   Plus
3R 23727504..23727777 1..274 99 -> Plus
3R 23727863..23728041 275..453 100 -> Plus

SD10002.pep Sequence

Translation from 611 to 1342

> SD10002.pep
MSNSHYNNYQQQQPHSSNGDPEYQHQQMVHQPQRFSNGHGMKTVAVPDMC
LFCFEVLDCELNNVDGPSVPVFSNDAYPLFVTWKIGRDKRLRGCIGTFSA
MELHHGLREYALTSAFKDSRFAPISRDELPRLTVSVSILQNFEEAQGHLD
WQLGVHGIRIEFLTERGCKRTATYLPQVATEQGWDQLQTIDSLLRKGGYR
AAITPETRKSIKLTRYRSQEIQMHYKEYREYQERRAQFGKVQC*

SD10002.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17030-PA 248 GF17030-PA 1..248 1..243 1192 90.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11242-PA 243 GG11242-PA 1..243 1..243 1324 99.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12196-PA 265 GH12196-PA 38..265 22..243 1045 86 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5902-PC 243 CG5902-PC 1..243 1..243 1308 100 Plus
CG5902-PA 243 CG5902-PA 1..243 1..243 1308 100 Plus
CG5902-PB 243 CG5902-PB 1..243 1..243 1308 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24141-PA 261 GI24141-PA 22..261 13..243 1067 85 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23386-PA 244 GL23386-PA 1..244 1..243 1096 88 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19214-PA 248 GA19214-PA 1..248 1..243 1197 92 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26545-PA 72 GM26545-PA 1..67 1..67 369 98.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21051-PA 243 GD21051-PA 1..243 1..243 1324 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24654-PA 263 GJ24654-PA 29..263 18..243 1059 86 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11489-PA 249 GK11489-PA 1..249 1..243 1104 87.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:50:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23435-PA 243 GE23435-PA 1..243 1..243 1316 99.2 Plus

SD10002.hyp Sequence

Translation from 611 to 1342

> SD10002.hyp
MSNSHYNNYQQQQPHSSNGDPEYQHQQMVHQPQRFSNGHGMKTVAVPDMC
LFCFEVLDCELNNVDGPSVPVFSNDAYPLFVTWKIGRDKRLRGCIGTFSA
MELHHGLREYALTSAFKDSRFAPISRDELPRLTVSVSILQNFEEAQGHLD
WQLGVHGIRIEFLTERGCKRTATYLPQVATEQGWDQLQTIDSLLRKGGYR
AAITPETRKSIKLTRYRSQEIQMHYKEYREYQERRAQFGKVQC*

SD10002.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5902-PC 243 CG5902-PC 1..243 1..243 1308 100 Plus
CG5902-PA 243 CG5902-PA 1..243 1..243 1308 100 Plus
CG5902-PB 243 CG5902-PB 1..243 1..243 1308 100 Plus