Clone SD10038 Report

Search the DGRC for SD10038

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:100
Well:38
Vector:pOT2
Associated Gene/TranscriptMED17-RA
Protein status:SD10038.pep: gold
Preliminary Size:2044
Sequenced Size:2063

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7957 2001-01-01 Release 2 assignment
CG7957 2002-05-20 Blastp of sequenced clone
CG7957 2003-01-01 Sim4 clustering to Release 3
MED17 2008-04-29 Release 5.5 accounting
MED17 2008-08-15 Release 5.9 accounting
MED17 2008-12-18 5.12 accounting

Clone Sequence Records

SD10038.complete Sequence

2063 bp (2063 high quality bases) assembled on 2002-05-20

GenBank Submission: AY118662

> SD10038.complete
CAAATGTTTTGTTTCCCGGCGCAAATATGTCGAATTCCGTGAATATATCA
GTGGAAACGACTTGCGAGAACCAGATACGTGAGATTGGCTACGATGGCAC
CGAATTGTATCAGCCGCCGCCGACTTTGTCGGAAAGTCTGGCGAAATGTG
CGGCGCGCATAGACTTTAGCAAAACGTCGCTGGACGACCTCAAGAAGGAG
GAGAAGTCGGCGGCAGCGGCCGCCGACGAGGACAAAGACGCCACTCAGTT
CCAAGAGAGCCTGTGGCCCTGGGATGCGGTGCGCAACAAGCTGAAGGATG
CGCTCACTGAGATATGTGTGCTGTCCGATGTGATTTCCATTGCCAAGGAC
AAGCGCTATCTAGTGCTCGATCCACTGCTCGAGGAGGCTGACGACACCAA
GCCCATTGTGCAGGTGTACAGTCGCAAGAAAGCCATCTCTCAGGCAGCCC
AAGTGCTCCTAAGTGGCGCTGAACGCCTGCGGAACGCGCACAGCGAGCAG
CGCAATCGCAATGTCTCAGATTTCCACATCGAACTACTGCGCCTGCGACA
GAACTGGCGCCTGAAGAAGGTGTCCAATGCGATTATCGGAGATCTCAGCT
ACCGCACCGCGGGCTCCAAGTTTGGCATGAGCGGCACCTTCGAGGTGACC
AAAGCTGAAGAGACCGGTGATGAAGACACAGCCAGCTCATCCAACAGTAG
CAGTAGCGTATCCGGCAACAATGGCATGCAACTTAAAGCCAGCTCCGCAT
TGCGTGTGATTGTTCCAGCGGAACTGCAGGGTGTCGCCTACATAAAGGTG
ATCACACAGAAGGATCAGGAGGATTTGTGCACCGCTCAGCTGAATCTGAT
GGGTCACGGACCCAATATAACTGCCCAGGTGGGTGTCTGGCAGAAGACAC
TGGAGTTCGCCCAGAATGTGCTCTTCTGCAAGGAGCTATTCGCTCAGTTG
GCACGTGAAGCTATCCAATTGCAAGCACCAATTCCACATGTGGTCATCGG
CAACCAAATTCGCGCCACTCTGCTGCCTAACATTCAACTTATTATCTCGT
TGTGCCACTCAACCACCTTCGATTCCAGCCAGCCGGCGCCAATTAACGAT
CATGACCATGTTCTGGAACACTCGCTGCATCAGCTTCTGCGCGAGGTGCA
CTACAAAAACTCACACCATCCCTTTCCCCATCCGGCCAGTGCACCACTGG
GACCAACTAAGAAGCGCATGCTAGCCGGTCCGATGGCCGCCGATCGGGAA
ACGTTGTTGGACATGACCAAGTCACAGACCATACTCGAACAGATCATCGC
CCAGGCGCAGCACATTTTCATGCGAAAGCGAACACAATATGTGCTCGATA
CGCTGGCCAGGGATGTGAAGGACCCGCAGATAGTGTCGCATTGGAATGCC
ATGAACAGTCCAACCATGTCGTGTGTGAAGATTAACATTGTAACGCACGG
TTACGATGCCATTGGACGCACCTCGCTGGTCATTCACGTCAAGGAGCGCT
CTCTTAAATGCATTTGTCGCGATGGACGCGTTATGCGACTGTCCTACGAG
CCGCAGGAACTTCGCGACCTGATCCTCTGCCAGATCAACTCTCACCAGAT
CTCCTGCCTGATCAGTCTAGCGCGCTGCATGTCCTGGACCGTGCTGTCGA
ACAGCAACCACTTGGGTATCGGCAAGGTGGAGCCGCTGGGAAATGCCAGT
TCCTGCCTTCTGGCATCTCCCAATAGCGATCGCATGATTGCCGTTCAGAT
TCGCTGCGATCCGCAGATAGATGTTAAAGTTTATATAGCGAGAAGTCCAC
GACAGGATTTCTTTCCCAGTCCACTGGTGCCGGAAAAGCTATGGGAGAAT
CTGGGAGGCACATTCAAGGAGGTGAGGTTCGACAAAATCGAAGGCAAGAG
CTTTCTCAACAAAATGGAGTTTCTGATGGCCTCGCTGACAAGTAACACGG
CCTGAAAACCCGTCACATGCATACCCACTAGATTGTAAATCAAATTAGAA
TTAATTAAAGTAAAAAGATTTGTAATTTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

SD10038.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
MED17-RA 2113 MED17-RA 86..2113 1..2028 9810 98.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14013617..14015377 116..1876 8490 98.8 Plus
chr3R 27901430 chr3R 14015434..14015592 1870..2028 795 100 Plus
chr3R 27901430 chr3R 14013431..14013546 1..116 580 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:53:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18189290..18191050 116..1876 8490 98.8 Plus
3R 32079331 3R 18191107..18191266 1870..2029 785 99.4 Plus
3R 32079331 3R 18189104..18189219 1..116 580 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 17930121..17931881 116..1876 8490 98.8 Plus
3R 31820162 3R 17931938..17932097 1870..2029 785 99.3 Plus
3R 31820162 3R 17929935..17930050 1..116 580 100 Plus
Blast to na_te.dros performed on 2019-03-16 08:36:46 has no hits.

SD10038.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:38:06 Download gff for SD10038.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14013431..14013545 1..115 100 -> Plus
chr3R 14013617..14015372 116..1871 98 -> Plus
chr3R 14015436..14015592 1872..2028 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:05:50 Download gff for SD10038.complete
Subject Subject Range Query Range Percent Splice Strand
MED17-RA 1..1929 27..1955 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:38:24 Download gff for SD10038.complete
Subject Subject Range Query Range Percent Splice Strand
MED17-RA 1..1929 27..1955 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:51:32 Download gff for SD10038.complete
Subject Subject Range Query Range Percent Splice Strand
MED17-RA 1..1929 27..1955 98   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:04 Download gff for SD10038.complete
Subject Subject Range Query Range Percent Splice Strand
MED17-RA 1..1929 27..1955 98   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:44:21 Download gff for SD10038.complete
Subject Subject Range Query Range Percent Splice Strand
MED17-RA 1..1929 27..1955 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:11:16 Download gff for SD10038.complete
Subject Subject Range Query Range Percent Splice Strand
MED17-RA 40..2067 1..2028 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:38:24 Download gff for SD10038.complete
Subject Subject Range Query Range Percent Splice Strand
MED17-RA 40..2067 1..2028 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:51:32 Download gff for SD10038.complete
Subject Subject Range Query Range Percent Splice Strand
MED17-RA 33..2060 1..2028 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:04 Download gff for SD10038.complete
Subject Subject Range Query Range Percent Splice Strand
MED17-RA 40..2067 1..2028 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:44:21 Download gff for SD10038.complete
Subject Subject Range Query Range Percent Splice Strand
MED17-RA 33..2060 1..2028 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:38:06 Download gff for SD10038.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18189290..18191045 116..1871 98 -> Plus
3R 18191109..18191265 1872..2028 99   Plus
3R 18189104..18189218 1..115 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:38:06 Download gff for SD10038.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18189290..18191045 116..1871 98 -> Plus
3R 18191109..18191265 1872..2028 99   Plus
3R 18189104..18189218 1..115 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:38:06 Download gff for SD10038.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18189290..18191045 116..1871 98 -> Plus
3R 18191109..18191265 1872..2028 99   Plus
3R 18189104..18189218 1..115 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:51:32 Download gff for SD10038.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14014826..14014940 1..115 100 -> Plus
arm_3R 14015012..14016767 116..1871 98 -> Plus
arm_3R 14016831..14016987 1872..2028 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:02:40 Download gff for SD10038.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17930121..17931876 116..1871 98 -> Plus
3R 17931940..17932096 1872..2028 99   Plus
3R 17929935..17930049 1..115 100 -> Plus

SD10038.hyp Sequence

Translation from 2 to 1954

> SD10038.hyp
NVLFPGANMSNSVNISVETTCENQIREIGYDGTELYQPPPTLSESLAKCA
ARIDFSKTSLDDLKKEEKSAAAAADEDKDATQFQESLWPWDAVRNKLKDA
LTEICVLSDVISIAKDKRYLVLDPLLEEADDTKPIVQVYSRKKAISQAAQ
VLLSGAERLRNAHSEQRNRNVSDFHIELLRLRQNWRLKKVSNAIIGDLSY
RTAGSKFGMSGTFEVTKAEETGDEDTASSSNSSSSVSGNNGMQLKASSAL
RVIVPAELQGVAYIKVITQKDQEDLCTAQLNLMGHGPNITAQVGVWQKTL
EFAQNVLFCKELFAQLAREAIQLQAPIPHVVIGNQIRATLLPNIQLIISL
CHSTTFDSSQPAPINDHDHVLEHSLHQLLREVHYKNSHHPFPHPASAPLG
PTKKRMLAGPMAADRETLLDMTKSQTILEQIIAQAQHIFMRKRTQYVLDT
LARDVKDPQIVSHWNAMNSPTMSCVKINIVTHGYDAIGRTSLVIHVKERS
LKCICRDGRVMRLSYEPQELRDLILCQINSHQISCLISLARCMSWTVLSN
SNHLGIGKVEPLGNASSCLLASPNSDRMIAVQIRCDPQIDVKVYIARSPR
QDFFPSPLVPEKLWENLGGTFKEVRFDKIEGKSFLNKMEFLMASLTSNTA
*

SD10038.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:19:45
Subject Length Description Subject Range Query Range Score Percent Strand
MED17-PA 642 CG7957-PA 1..642 9..650 3294 100 Plus

SD10038.pep Sequence

Translation from 26 to 1954

> SD10038.pep
MSNSVNISVETTCENQIREIGYDGTELYQPPPTLSESLAKCAARIDFSKT
SLDDLKKEEKSAAAAADEDKDATQFQESLWPWDAVRNKLKDALTEICVLS
DVISIAKDKRYLVLDPLLEEADDTKPIVQVYSRKKAISQAAQVLLSGAER
LRNAHSEQRNRNVSDFHIELLRLRQNWRLKKVSNAIIGDLSYRTAGSKFG
MSGTFEVTKAEETGDEDTASSSNSSSSVSGNNGMQLKASSALRVIVPAEL
QGVAYIKVITQKDQEDLCTAQLNLMGHGPNITAQVGVWQKTLEFAQNVLF
CKELFAQLAREAIQLQAPIPHVVIGNQIRATLLPNIQLIISLCHSTTFDS
SQPAPINDHDHVLEHSLHQLLREVHYKNSHHPFPHPASAPLGPTKKRMLA
GPMAADRETLLDMTKSQTILEQIIAQAQHIFMRKRTQYVLDTLARDVKDP
QIVSHWNAMNSPTMSCVKINIVTHGYDAIGRTSLVIHVKERSLKCICRDG
RVMRLSYEPQELRDLILCQINSHQISCLISLARCMSWTVLSNSNHLGIGK
VEPLGNASSCLLASPNSDRMIAVQIRCDPQIDVKVYIARSPRQDFFPSPL
VPEKLWENLGGTFKEVRFDKIEGKSFLNKMEFLMASLTSNTA*

SD10038.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:45:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18510-PA 642 GF18510-PA 1..642 1..642 3162 95.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22704-PA 642 GG22704-PA 1..642 1..642 3416 98.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15742-PA 648 GH15742-PA 1..648 1..642 3197 92.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:27:19
Subject Length Description Subject Range Query Range Score Percent Strand
MED17-PA 642 CG7957-PA 1..642 1..642 3294 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23722-PA 647 GI23722-PA 1..646 1..641 3134 92.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12596-PA 642 GL12596-PA 1..642 1..642 3225 96.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20720-PA 642 GA20720-PA 1..642 1..642 3225 96.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:45:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15283-PA 642 GM15283-PA 1..642 1..642 3443 99.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19210-PA 442 GD19210-PA 1..442 201..642 2380 99.3 Plus
Dsim\GD19208-PA 118 GD19208-PA 1..109 1..109 559 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23280-PA 646 GJ23280-PA 1..646 1..642 3210 93 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11248-PA 645 GK11248-PA 3..645 2..642 3224 93.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:45:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25518-PA 642 GE25518-PA 1..642 1..642 3426 98.8 Plus