BDGP Sequence Production Resources |
Search the DGRC for SD10038
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 100 |
Well: | 38 |
Vector: | pOT2 |
Associated Gene/Transcript | MED17-RA |
Protein status: | SD10038.pep: gold |
Preliminary Size: | 2044 |
Sequenced Size: | 2063 |
Gene | Date | Evidence |
---|---|---|
CG7957 | 2001-01-01 | Release 2 assignment |
CG7957 | 2002-05-20 | Blastp of sequenced clone |
CG7957 | 2003-01-01 | Sim4 clustering to Release 3 |
MED17 | 2008-04-29 | Release 5.5 accounting |
MED17 | 2008-08-15 | Release 5.9 accounting |
MED17 | 2008-12-18 | 5.12 accounting |
2063 bp (2063 high quality bases) assembled on 2002-05-20
GenBank Submission: AY118662
> SD10038.complete CAAATGTTTTGTTTCCCGGCGCAAATATGTCGAATTCCGTGAATATATCA GTGGAAACGACTTGCGAGAACCAGATACGTGAGATTGGCTACGATGGCAC CGAATTGTATCAGCCGCCGCCGACTTTGTCGGAAAGTCTGGCGAAATGTG CGGCGCGCATAGACTTTAGCAAAACGTCGCTGGACGACCTCAAGAAGGAG GAGAAGTCGGCGGCAGCGGCCGCCGACGAGGACAAAGACGCCACTCAGTT CCAAGAGAGCCTGTGGCCCTGGGATGCGGTGCGCAACAAGCTGAAGGATG CGCTCACTGAGATATGTGTGCTGTCCGATGTGATTTCCATTGCCAAGGAC AAGCGCTATCTAGTGCTCGATCCACTGCTCGAGGAGGCTGACGACACCAA GCCCATTGTGCAGGTGTACAGTCGCAAGAAAGCCATCTCTCAGGCAGCCC AAGTGCTCCTAAGTGGCGCTGAACGCCTGCGGAACGCGCACAGCGAGCAG CGCAATCGCAATGTCTCAGATTTCCACATCGAACTACTGCGCCTGCGACA GAACTGGCGCCTGAAGAAGGTGTCCAATGCGATTATCGGAGATCTCAGCT ACCGCACCGCGGGCTCCAAGTTTGGCATGAGCGGCACCTTCGAGGTGACC AAAGCTGAAGAGACCGGTGATGAAGACACAGCCAGCTCATCCAACAGTAG CAGTAGCGTATCCGGCAACAATGGCATGCAACTTAAAGCCAGCTCCGCAT TGCGTGTGATTGTTCCAGCGGAACTGCAGGGTGTCGCCTACATAAAGGTG ATCACACAGAAGGATCAGGAGGATTTGTGCACCGCTCAGCTGAATCTGAT GGGTCACGGACCCAATATAACTGCCCAGGTGGGTGTCTGGCAGAAGACAC TGGAGTTCGCCCAGAATGTGCTCTTCTGCAAGGAGCTATTCGCTCAGTTG GCACGTGAAGCTATCCAATTGCAAGCACCAATTCCACATGTGGTCATCGG CAACCAAATTCGCGCCACTCTGCTGCCTAACATTCAACTTATTATCTCGT TGTGCCACTCAACCACCTTCGATTCCAGCCAGCCGGCGCCAATTAACGAT CATGACCATGTTCTGGAACACTCGCTGCATCAGCTTCTGCGCGAGGTGCA CTACAAAAACTCACACCATCCCTTTCCCCATCCGGCCAGTGCACCACTGG GACCAACTAAGAAGCGCATGCTAGCCGGTCCGATGGCCGCCGATCGGGAA ACGTTGTTGGACATGACCAAGTCACAGACCATACTCGAACAGATCATCGC CCAGGCGCAGCACATTTTCATGCGAAAGCGAACACAATATGTGCTCGATA CGCTGGCCAGGGATGTGAAGGACCCGCAGATAGTGTCGCATTGGAATGCC ATGAACAGTCCAACCATGTCGTGTGTGAAGATTAACATTGTAACGCACGG TTACGATGCCATTGGACGCACCTCGCTGGTCATTCACGTCAAGGAGCGCT CTCTTAAATGCATTTGTCGCGATGGACGCGTTATGCGACTGTCCTACGAG CCGCAGGAACTTCGCGACCTGATCCTCTGCCAGATCAACTCTCACCAGAT CTCCTGCCTGATCAGTCTAGCGCGCTGCATGTCCTGGACCGTGCTGTCGA ACAGCAACCACTTGGGTATCGGCAAGGTGGAGCCGCTGGGAAATGCCAGT TCCTGCCTTCTGGCATCTCCCAATAGCGATCGCATGATTGCCGTTCAGAT TCGCTGCGATCCGCAGATAGATGTTAAAGTTTATATAGCGAGAAGTCCAC GACAGGATTTCTTTCCCAGTCCACTGGTGCCGGAAAAGCTATGGGAGAAT CTGGGAGGCACATTCAAGGAGGTGAGGTTCGACAAAATCGAAGGCAAGAG CTTTCTCAACAAAATGGAGTTTCTGATGGCCTCGCTGACAAGTAACACGG CCTGAAAACCCGTCACATGCATACCCACTAGATTGTAAATCAAATTAGAA TTAATTAAAGTAAAAAGATTTGTAATTTAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MED17-RA | 2113 | MED17-RA | 86..2113 | 1..2028 | 9810 | 98.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 14013617..14015377 | 116..1876 | 8490 | 98.8 | Plus |
chr3R | 27901430 | chr3R | 14015434..14015592 | 1870..2028 | 795 | 100 | Plus |
chr3R | 27901430 | chr3R | 14013431..14013546 | 1..116 | 580 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 18189290..18191050 | 116..1876 | 8490 | 98.8 | Plus |
3R | 32079331 | 3R | 18191107..18191266 | 1870..2029 | 785 | 99.4 | Plus |
3R | 32079331 | 3R | 18189104..18189219 | 1..116 | 580 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 17930121..17931881 | 116..1876 | 8490 | 98.8 | Plus |
3R | 31820162 | 3R | 17931938..17932097 | 1870..2029 | 785 | 99.3 | Plus |
3R | 31820162 | 3R | 17929935..17930050 | 1..116 | 580 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 14013431..14013545 | 1..115 | 100 | -> | Plus |
chr3R | 14013617..14015372 | 116..1871 | 98 | -> | Plus |
chr3R | 14015436..14015592 | 1872..2028 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED17-RA | 1..1929 | 27..1955 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED17-RA | 1..1929 | 27..1955 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED17-RA | 1..1929 | 27..1955 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED17-RA | 1..1929 | 27..1955 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED17-RA | 1..1929 | 27..1955 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED17-RA | 40..2067 | 1..2028 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED17-RA | 40..2067 | 1..2028 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED17-RA | 33..2060 | 1..2028 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED17-RA | 40..2067 | 1..2028 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED17-RA | 33..2060 | 1..2028 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18189290..18191045 | 116..1871 | 98 | -> | Plus |
3R | 18191109..18191265 | 1872..2028 | 99 | Plus | |
3R | 18189104..18189218 | 1..115 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18189290..18191045 | 116..1871 | 98 | -> | Plus |
3R | 18191109..18191265 | 1872..2028 | 99 | Plus | |
3R | 18189104..18189218 | 1..115 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18189290..18191045 | 116..1871 | 98 | -> | Plus |
3R | 18191109..18191265 | 1872..2028 | 99 | Plus | |
3R | 18189104..18189218 | 1..115 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 14014826..14014940 | 1..115 | 100 | -> | Plus |
arm_3R | 14015012..14016767 | 116..1871 | 98 | -> | Plus |
arm_3R | 14016831..14016987 | 1872..2028 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 17930121..17931876 | 116..1871 | 98 | -> | Plus |
3R | 17931940..17932096 | 1872..2028 | 99 | Plus | |
3R | 17929935..17930049 | 1..115 | 100 | -> | Plus |
Translation from 2 to 1954
> SD10038.hyp NVLFPGANMSNSVNISVETTCENQIREIGYDGTELYQPPPTLSESLAKCA ARIDFSKTSLDDLKKEEKSAAAAADEDKDATQFQESLWPWDAVRNKLKDA LTEICVLSDVISIAKDKRYLVLDPLLEEADDTKPIVQVYSRKKAISQAAQ VLLSGAERLRNAHSEQRNRNVSDFHIELLRLRQNWRLKKVSNAIIGDLSY RTAGSKFGMSGTFEVTKAEETGDEDTASSSNSSSSVSGNNGMQLKASSAL RVIVPAELQGVAYIKVITQKDQEDLCTAQLNLMGHGPNITAQVGVWQKTL EFAQNVLFCKELFAQLAREAIQLQAPIPHVVIGNQIRATLLPNIQLIISL CHSTTFDSSQPAPINDHDHVLEHSLHQLLREVHYKNSHHPFPHPASAPLG PTKKRMLAGPMAADRETLLDMTKSQTILEQIIAQAQHIFMRKRTQYVLDT LARDVKDPQIVSHWNAMNSPTMSCVKINIVTHGYDAIGRTSLVIHVKERS LKCICRDGRVMRLSYEPQELRDLILCQINSHQISCLISLARCMSWTVLSN SNHLGIGKVEPLGNASSCLLASPNSDRMIAVQIRCDPQIDVKVYIARSPR QDFFPSPLVPEKLWENLGGTFKEVRFDKIEGKSFLNKMEFLMASLTSNTA *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MED17-PA | 642 | CG7957-PA | 1..642 | 9..650 | 3294 | 100 | Plus |
Translation from 26 to 1954
> SD10038.pep MSNSVNISVETTCENQIREIGYDGTELYQPPPTLSESLAKCAARIDFSKT SLDDLKKEEKSAAAAADEDKDATQFQESLWPWDAVRNKLKDALTEICVLS DVISIAKDKRYLVLDPLLEEADDTKPIVQVYSRKKAISQAAQVLLSGAER LRNAHSEQRNRNVSDFHIELLRLRQNWRLKKVSNAIIGDLSYRTAGSKFG MSGTFEVTKAEETGDEDTASSSNSSSSVSGNNGMQLKASSALRVIVPAEL QGVAYIKVITQKDQEDLCTAQLNLMGHGPNITAQVGVWQKTLEFAQNVLF CKELFAQLAREAIQLQAPIPHVVIGNQIRATLLPNIQLIISLCHSTTFDS SQPAPINDHDHVLEHSLHQLLREVHYKNSHHPFPHPASAPLGPTKKRMLA GPMAADRETLLDMTKSQTILEQIIAQAQHIFMRKRTQYVLDTLARDVKDP QIVSHWNAMNSPTMSCVKINIVTHGYDAIGRTSLVIHVKERSLKCICRDG RVMRLSYEPQELRDLILCQINSHQISCLISLARCMSWTVLSNSNHLGIGK VEPLGNASSCLLASPNSDRMIAVQIRCDPQIDVKVYIARSPRQDFFPSPL VPEKLWENLGGTFKEVRFDKIEGKSFLNKMEFLMASLTSNTA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18510-PA | 642 | GF18510-PA | 1..642 | 1..642 | 3162 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22704-PA | 642 | GG22704-PA | 1..642 | 1..642 | 3416 | 98.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15742-PA | 648 | GH15742-PA | 1..648 | 1..642 | 3197 | 92.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MED17-PA | 642 | CG7957-PA | 1..642 | 1..642 | 3294 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23722-PA | 647 | GI23722-PA | 1..646 | 1..641 | 3134 | 92.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12596-PA | 642 | GL12596-PA | 1..642 | 1..642 | 3225 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20720-PA | 642 | GA20720-PA | 1..642 | 1..642 | 3225 | 96.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15283-PA | 642 | GM15283-PA | 1..642 | 1..642 | 3443 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19210-PA | 442 | GD19210-PA | 1..442 | 201..642 | 2380 | 99.3 | Plus |
Dsim\GD19208-PA | 118 | GD19208-PA | 1..109 | 1..109 | 559 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23280-PA | 646 | GJ23280-PA | 1..646 | 1..642 | 3210 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11248-PA | 645 | GK11248-PA | 3..645 | 2..642 | 3224 | 93.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25518-PA | 642 | GE25518-PA | 1..642 | 1..642 | 3426 | 98.8 | Plus |