Clone SD10213 Report

Search the DGRC for SD10213

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:102
Well:13
Vector:pOT2
Associated Gene/TranscriptNs2-RA
Protein status:SD10213.pep: gold
Preliminary Size:2615
Sequenced Size:2253

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6501 2001-01-01 Release 2 assignment
CG6501 2002-02-26 Blastp of sequenced clone
CG6501 2003-01-01 Sim4 clustering to Release 3
Ngp 2008-04-29 Release 5.5 accounting
Ngp 2008-08-15 Release 5.9 accounting
Ngp 2008-12-18 5.12 accounting

Clone Sequence Records

SD10213.complete Sequence

2253 bp (2253 high quality bases) assembled on 2002-02-26

GenBank Submission: AY089700

> SD10213.complete
AAAACGCACGATCCCTTTGTTTTTTTATTTCATATAAAAACACGTGTGGT
TTGGTTTGATCGTGTTCAAATATACGATTTGATTTATAAACAAGGCACAC
GACATTCTTGAGACACCATGCCAAAGGTACGCAGCACCCCGGGTAAGCCC
CGGACGCAGGGATTCAACCACTCAAACCACTCCATGAATCCGGAGCGCCC
CAAAAGCGGTCTCAAGGGAGTCGCCCACCCCCGCACTAAGGGCACCATCA
AGCGGCTTCAGATGTACCGTAACTTCAAGGCCAAGCGCGATCGCACTGGA
AAGATCCTCACGCCCGCCCCCTTCCAGGGGCGCCTGCCTGCTGGAACAAT
GGCTCGAGTTGAGCCTACGCCCAAGTGGTTTAGCAATTCCCGCGTTATCT
CGCAAACTGCTTTGCAAAAGTTCCAGGATGAGATTGGCAAGGCTGTCAAG
GATCCCTACCAGGTGATCATGAAGCCATCCCAGTTACCGGTAACTTTACT
GAACGAGGCAGCAAAATACAAAAGGGTTCATTTGCTGGACACCGAGAGCT
TCGACAGTACCTTTGGGCCCAAAAAGCAGCGCAAGCGCGTCAGCCTAAAG
GTTCGCGATCTGGAAGATTTAAGCAAGGCGGCCGATGACCAGGCCGATAA
GTACGATTCAGCTAAGGATTTAGATCTAATCCGCGAGGATACTGGCGAAA
AGAAGGCCGTCCGTGATTGGGTGTTCGGTGCGGGGCAGAGTAAACGCATC
TGGAACGAGTTGCACAAGGTGGTCGATGCGTCCGATGTGCTGCTTCAGGT
TCTTGATGCCCGCGATCCCATGGGCACGCGCTCGAAGTACATTGAGGAGT
TCTTGCGCAAGGAAAAACCGCACAAACATCTATTTTTCATTCTGAACAAG
GTTGATCTGGTACCGGTGTGGGTAACGCAGCGTTGGGTGGCTATTCTTAG
TGCCGAATATCCTACTATTGCCTTCCATGCCTCCCTACAACATCCTTTTG
GAAAAGGTGCGCTCATCAATCTATTCCGTCAGTTGGGCAAACTGCATTTG
GACAAAAAACAGATCAGCGTGGGCTTCATTGGGTATCCCAACGTGGGTAA
ATCTTCTGTTATTAATGCGCTACGATCAAAAAAGGTTTGCAAGGTAGCAC
CAATTGCGGGGGAGACGAAAGTATGGCAGTATATAACGCTAATGAAACGC
ATCTTCTTGATCGATTGTCCTGGCGTGGTGTATCCCACCGCGGAGACTGA
CACCGAGAAAGTGTTGAAGGGTGTGGTGCGGGTGGAGCTCGTCACAAATC
CTGAAGATTACGTAGACTCTCTGCTGAAACGCGTGCGTCCGGAGTACATT
TCAAAGAACTACAAAATTGAACACTGGAACACATCCACGCACTTTTTAGA
ACAGTTGGCTCAAAAGACCGGCAAGTTGCTAAAAGGCGGTGAACCGGACG
TTACGGTAACAGCCCGTATGGTGCTTAACGATTGGCAACGAGGCAAACTT
CCTTTCTACGTTCCACCCGAAGGATTCGCAGTTCCCAAATCCCAGGAGGG
TAAGGAGGAGGAAGTAGTTGCAGAGGATCCCAACGAAGATGCTAAATCCG
AGGCACCTACATTCGTCAGTGAGTCTGTAAAGAAGGCGCGCGAGTTTAAG
CAGATCCAAGATTTTCGAAAAATACGCGTGGGTCTTGAGTATGAGCAGGA
AGATGTGAAGGATCTTGATCACATAGATCTAGAGCTTTTAGAGCAACAGA
AGGCCGAGCGTGCGGCAAAGAAAAAGGCTCGCATCCACAACCTCGGTGAA
GAGGACGAGGAGTCTAGCGATGGAGCGGACGAGTTTTACTCGGAGGACGA
GTACAATGAGGACTTGCAACGCGTTGTGCACAAGAAGGCCAAGTCAAAGA
AGCCACAACAGCTGGCCATCACATCGTCTGGTAAATTCCGAGTGGCCAAA
ATACAACCTGGTGATTCGGATGGTGCTGGCAGCTCTGACGACGATGGACC
CAGCACTTCAAAGGCTCCTCGGTTGACTGCAAAGCAAAAACGCTCCCTGG
AGCGCAGTCAGAAACGCAAGAAGATTGGCAGCAACTTTTACGAGACGACA
AATGTTAAGAATCGCAATAGAAACAAAAAGAAGGACGCGTAAAATATTAC
GTTTACACTCTAGGCTATATTTTCTTGCAAGGAAAAACTACACTTTAAGA
ATCCAAATAAAAAGTTGATCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

SD10213.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
ns2-RA 2579 ns2-RA 16..2238 1..2223 11115 100 Plus
CG14480-RA 1765 CG14480-RA 1263..1765 2223..1721 2515 100 Minus
CG14480.a 1770 CG14480.a 1268..1770 2223..1721 2515 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13452838..13454055 2222..1005 6000 99.5 Minus
chr2R 21145070 chr2R 13454110..13454792 1008..326 3400 99.9 Minus
chr2R 21145070 chr2R 13455177..13455504 328..1 1640 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:53:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17565778..17566996 2223..1005 6095 100 Minus
2R 25286936 2R 17567051..17567733 1008..326 3415 100 Minus
2R 25286936 2R 17568118..17568445 328..1 1640 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17566977..17568195 2223..1005 6095 100 Minus
2R 25260384 2R 17568250..17568932 1008..326 3415 100 Minus
2R 25260384 2R 17569317..17569644 328..1 1640 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:55:04 has no hits.

SD10213.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:55:44 Download gff for SD10213.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13452838..13454053 1007..2222 99 <- Minus
chr2R 13454112..13454790 328..1006 99 <- Minus
chr2R 13455178..13455504 1..327 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:05:56 Download gff for SD10213.complete
Subject Subject Range Query Range Percent Splice Strand
Ngp-RA 1..2025 118..2142 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:35:31 Download gff for SD10213.complete
Subject Subject Range Query Range Percent Splice Strand
ns2-RA 1..2025 118..2142 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:28:43 Download gff for SD10213.complete
Subject Subject Range Query Range Percent Splice Strand
Ns2-RA 1..2025 118..2142 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:07:10 Download gff for SD10213.complete
Subject Subject Range Query Range Percent Splice Strand
Ngp-RA 1..2025 118..2142 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:58 Download gff for SD10213.complete
Subject Subject Range Query Range Percent Splice Strand
Ns2-RA 1..2025 118..2142 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:01:05 Download gff for SD10213.complete
Subject Subject Range Query Range Percent Splice Strand
Ngp-RA 1..2222 1..2222 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:35:31 Download gff for SD10213.complete
Subject Subject Range Query Range Percent Splice Strand
ns2-RA 1..2222 1..2222 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:43 Download gff for SD10213.complete
Subject Subject Range Query Range Percent Splice Strand
Ns2-RA 12..2233 1..2222 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:07:10 Download gff for SD10213.complete
Subject Subject Range Query Range Percent Splice Strand
Ngp-RA 1..2222 1..2222 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:58 Download gff for SD10213.complete
Subject Subject Range Query Range Percent Splice Strand
Ns2-RA 12..2233 1..2222 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:55:44 Download gff for SD10213.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17565779..17566994 1007..2222 100 <- Minus
2R 17567053..17567731 328..1006 100 <- Minus
2R 17568119..17568445 1..327 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:55:44 Download gff for SD10213.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17565779..17566994 1007..2222 100 <- Minus
2R 17567053..17567731 328..1006 100 <- Minus
2R 17568119..17568445 1..327 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:55:44 Download gff for SD10213.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17565779..17566994 1007..2222 100 <- Minus
2R 17567053..17567731 328..1006 100 <- Minus
2R 17568119..17568445 1..327 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:43 Download gff for SD10213.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13453284..13454499 1007..2222 100 <- Minus
arm_2R 13454558..13455236 328..1006 100 <- Minus
arm_2R 13455624..13455950 1..327 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:41:06 Download gff for SD10213.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17566978..17568193 1007..2222 100 <- Minus
2R 17568252..17568930 328..1006 100 <- Minus
2R 17569318..17569644 1..327 100   Minus

SD10213.pep Sequence

Translation from 117 to 2141

> SD10213.pep
MPKVRSTPGKPRTQGFNHSNHSMNPERPKSGLKGVAHPRTKGTIKRLQMY
RNFKAKRDRTGKILTPAPFQGRLPAGTMARVEPTPKWFSNSRVISQTALQ
KFQDEIGKAVKDPYQVIMKPSQLPVTLLNEAAKYKRVHLLDTESFDSTFG
PKKQRKRVSLKVRDLEDLSKAADDQADKYDSAKDLDLIREDTGEKKAVRD
WVFGAGQSKRIWNELHKVVDASDVLLQVLDARDPMGTRSKYIEEFLRKEK
PHKHLFFILNKVDLVPVWVTQRWVAILSAEYPTIAFHASLQHPFGKGALI
NLFRQLGKLHLDKKQISVGFIGYPNVGKSSVINALRSKKVCKVAPIAGET
KVWQYITLMKRIFLIDCPGVVYPTAETDTEKVLKGVVRVELVTNPEDYVD
SLLKRVRPEYISKNYKIEHWNTSTHFLEQLAQKTGKLLKGGEPDVTVTAR
MVLNDWQRGKLPFYVPPEGFAVPKSQEGKEEEVVAEDPNEDAKSEAPTFV
SESVKKAREFKQIQDFRKIRVGLEYEQEDVKDLDHIDLELLEQQKAERAA
KKKARIHNLGEEDEESSDGADEFYSEDEYNEDLQRVVHKKAKSKKPQQLA
ITSSGKFRVAKIQPGDSDGAGSSDDDGPSTSKAPRLTAKQKRSLERSQKR
KKIGSNFYETTNVKNRNRNKKKDA*

SD10213.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13248-PA 676 GF13248-PA 1..676 1..674 3280 93.2 Plus
Dana\GF17911-PA 581 GF17911-PA 93..421 161..469 483 34.5 Plus
Dana\GF21278-PA 605 GF21278-PA 319..500 299..467 223 32.8 Plus
Dana\GF15352-PA 575 GF15352-PA 333..492 316..470 182 32.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21043-PA 674 GG21043-PA 1..674 1..674 3555 99 Plus
Dere\GG16794-PA 581 GG16794-PA 93..421 161..468 476 34.6 Plus
Dere\GG12698-PA 607 GG12698-PA 321..509 299..476 225 31.2 Plus
Dere\GG21249-PA 575 GG21249-PA 333..491 316..468 188 34.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20960-PA 682 GH20960-PA 1..682 1..674 3157 88 Plus
Dgri\GH18066-PA 581 GH18066-PA 138..419 209..463 472 36.2 Plus
Dgri\GH11875-PA 611 GH11875-PA 319..507 292..467 225 30.5 Plus
Dgri\GH10880-PA 570 GH10880-PA 332..489 316..466 181 32.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
Ns2-PA 674 CG6501-PA 1..674 1..674 3490 100 Plus
Ns1-PA 581 CG3983-PA 88..571 156..635 486 29.2 Plus
Ns3-PB 606 CG14788-PB 320..508 299..476 212 31.2 Plus
Ns3-PA 606 CG14788-PA 320..508 299..476 212 31.2 Plus
Ns4-PA 575 CG9320-PA 333..540 316..509 174 28.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21297-PA 678 GI21297-PA 1..678 1..674 3228 89.6 Plus
Dmoj\GI23744-PA 583 GI23744-PA 140..427 209..468 475 36.8 Plus
Dmoj\GI15663-PA 613 GI15663-PA 321..509 292..467 226 32.5 Plus
Dmoj\GI18253-PA 574 GI18253-PA 335..494 316..470 187 32.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10621-PA 676 GL10621-PA 1..676 1..674 3259 90.5 Plus
Dper\GL21923-PA 583 GL21923-PA 138..427 209..475 474 35.9 Plus
Dper\GL14378-PA 602 GL14378-PA 311..497 294..467 226 30.3 Plus
Dper\GL18517-PA 577 GL18517-PA 333..490 316..466 189 34.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19643-PA 676 GA19643-PA 1..676 1..674 3250 90.3 Plus
Dpse\GA26447-PA 583 GA26447-PA 138..427 209..475 474 35.9 Plus
Dpse\GA13246-PA 602 GA13246-PA 311..497 294..467 226 30.3 Plus
Dpse\GA21698-PA 577 GA21698-PA 333..490 316..466 189 34.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19971-PA 674 GM19971-PA 1..674 1..674 3552 99.1 Plus
Dsec\GM15388-PA 581 GM15388-PA 93..440 161..493 483 33.4 Plus
Dsec\GM18974-PA 607 GM18974-PA 321..509 299..476 225 31.2 Plus
Dsec\GM23366-PA 575 GM23366-PA 333..492 316..470 185 33.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25465-PA 674 GD25465-PA 1..674 1..674 3566 99.4 Plus
Dsim\GD20254-PA 328 GD20254-PA 12..187 313..493 342 40.3 Plus
Dsim\GD24278-PA 575 GD24278-PA 333..492 316..470 185 33.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20899-PA 682 GJ20899-PA 1..682 1..674 3112 88.4 Plus
Dvir\GJ10591-PA 581 GJ10591-PA 93..425 161..468 471 34.2 Plus
Dvir\GJ19196-PA 611 GJ19196-PA 319..507 292..467 225 30.5 Plus
Dvir\GJ17511-PA 576 GJ17511-PA 338..532 316..496 200 30.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21401-PA 681 GK21401-PA 1..681 1..674 3153 89 Plus
Dwil\GK13906-PA 579 GK13906-PA 139..426 209..468 462 36.1 Plus
Dwil\GK10107-PA 610 GK10107-PA 321..502 299..467 220 31.1 Plus
Dwil\GK14912-PA 576 GK14912-PA 335..491 317..466 188 33.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13986-PA 674 GE13986-PA 1..674 1..674 3558 99 Plus
Dyak\GE26110-PA 581 GE26110-PA 93..421 161..468 475 34.6 Plus
Dyak\GE16528-PA 572 GE16528-PA 321..474 299..476 200 29.3 Plus
Dyak\GE12344-PA 575 GE12344-PA 333..492 316..470 186 33.9 Plus

SD10213.hyp Sequence

Translation from 117 to 2141

> SD10213.hyp
MPKVRSTPGKPRTQGFNHSNHSMNPERPKSGLKGVAHPRTKGTIKRLQMY
RNFKAKRDRTGKILTPAPFQGRLPAGTMARVEPTPKWFSNSRVISQTALQ
KFQDEIGKAVKDPYQVIMKPSQLPVTLLNEAAKYKRVHLLDTESFDSTFG
PKKQRKRVSLKVRDLEDLSKAADDQADKYDSAKDLDLIREDTGEKKAVRD
WVFGAGQSKRIWNELHKVVDASDVLLQVLDARDPMGTRSKYIEEFLRKEK
PHKHLFFILNKVDLVPVWVTQRWVAILSAEYPTIAFHASLQHPFGKGALI
NLFRQLGKLHLDKKQISVGFIGYPNVGKSSVINALRSKKVCKVAPIAGET
KVWQYITLMKRIFLIDCPGVVYPTAETDTEKVLKGVVRVELVTNPEDYVD
SLLKRVRPEYISKNYKIEHWNTSTHFLEQLAQKTGKLLKGGEPDVTVTAR
MVLNDWQRGKLPFYVPPEGFAVPKSQEGKEEEVVAEDPNEDAKSEAPTFV
SESVKKAREFKQIQDFRKIRVGLEYEQEDVKDLDHIDLELLEQQKAERAA
KKKARIHNLGEEDEESSDGADEFYSEDEYNEDLQRVVHKKAKSKKPQQLA
ITSSGKFRVAKIQPGDSDGAGSSDDDGPSTSKAPRLTAKQKRSLERSQKR
KKIGSNFYETTNVKNRNRNKKKDA*

SD10213.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
Ns2-PA 674 CG6501-PA 1..674 1..674 3490 100 Plus
Ns1-PA 581 CG3983-PA 88..571 156..635 486 29.2 Plus
Ns3-PB 606 CG14788-PB 320..508 299..476 212 31.2 Plus
Ns3-PA 606 CG14788-PA 320..508 299..476 212 31.2 Plus
Ns4-PA 575 CG9320-PA 333..540 316..509 174 28.1 Plus