BDGP Sequence Production Resources |
Search the DGRC for SD10213
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 102 |
Well: | 13 |
Vector: | pOT2 |
Associated Gene/Transcript | Ns2-RA |
Protein status: | SD10213.pep: gold |
Preliminary Size: | 2615 |
Sequenced Size: | 2253 |
Gene | Date | Evidence |
---|---|---|
CG6501 | 2001-01-01 | Release 2 assignment |
CG6501 | 2002-02-26 | Blastp of sequenced clone |
CG6501 | 2003-01-01 | Sim4 clustering to Release 3 |
Ngp | 2008-04-29 | Release 5.5 accounting |
Ngp | 2008-08-15 | Release 5.9 accounting |
Ngp | 2008-12-18 | 5.12 accounting |
2253 bp (2253 high quality bases) assembled on 2002-02-26
GenBank Submission: AY089700
> SD10213.complete AAAACGCACGATCCCTTTGTTTTTTTATTTCATATAAAAACACGTGTGGT TTGGTTTGATCGTGTTCAAATATACGATTTGATTTATAAACAAGGCACAC GACATTCTTGAGACACCATGCCAAAGGTACGCAGCACCCCGGGTAAGCCC CGGACGCAGGGATTCAACCACTCAAACCACTCCATGAATCCGGAGCGCCC CAAAAGCGGTCTCAAGGGAGTCGCCCACCCCCGCACTAAGGGCACCATCA AGCGGCTTCAGATGTACCGTAACTTCAAGGCCAAGCGCGATCGCACTGGA AAGATCCTCACGCCCGCCCCCTTCCAGGGGCGCCTGCCTGCTGGAACAAT GGCTCGAGTTGAGCCTACGCCCAAGTGGTTTAGCAATTCCCGCGTTATCT CGCAAACTGCTTTGCAAAAGTTCCAGGATGAGATTGGCAAGGCTGTCAAG GATCCCTACCAGGTGATCATGAAGCCATCCCAGTTACCGGTAACTTTACT GAACGAGGCAGCAAAATACAAAAGGGTTCATTTGCTGGACACCGAGAGCT TCGACAGTACCTTTGGGCCCAAAAAGCAGCGCAAGCGCGTCAGCCTAAAG GTTCGCGATCTGGAAGATTTAAGCAAGGCGGCCGATGACCAGGCCGATAA GTACGATTCAGCTAAGGATTTAGATCTAATCCGCGAGGATACTGGCGAAA AGAAGGCCGTCCGTGATTGGGTGTTCGGTGCGGGGCAGAGTAAACGCATC TGGAACGAGTTGCACAAGGTGGTCGATGCGTCCGATGTGCTGCTTCAGGT TCTTGATGCCCGCGATCCCATGGGCACGCGCTCGAAGTACATTGAGGAGT TCTTGCGCAAGGAAAAACCGCACAAACATCTATTTTTCATTCTGAACAAG GTTGATCTGGTACCGGTGTGGGTAACGCAGCGTTGGGTGGCTATTCTTAG TGCCGAATATCCTACTATTGCCTTCCATGCCTCCCTACAACATCCTTTTG GAAAAGGTGCGCTCATCAATCTATTCCGTCAGTTGGGCAAACTGCATTTG GACAAAAAACAGATCAGCGTGGGCTTCATTGGGTATCCCAACGTGGGTAA ATCTTCTGTTATTAATGCGCTACGATCAAAAAAGGTTTGCAAGGTAGCAC CAATTGCGGGGGAGACGAAAGTATGGCAGTATATAACGCTAATGAAACGC ATCTTCTTGATCGATTGTCCTGGCGTGGTGTATCCCACCGCGGAGACTGA CACCGAGAAAGTGTTGAAGGGTGTGGTGCGGGTGGAGCTCGTCACAAATC CTGAAGATTACGTAGACTCTCTGCTGAAACGCGTGCGTCCGGAGTACATT TCAAAGAACTACAAAATTGAACACTGGAACACATCCACGCACTTTTTAGA ACAGTTGGCTCAAAAGACCGGCAAGTTGCTAAAAGGCGGTGAACCGGACG TTACGGTAACAGCCCGTATGGTGCTTAACGATTGGCAACGAGGCAAACTT CCTTTCTACGTTCCACCCGAAGGATTCGCAGTTCCCAAATCCCAGGAGGG TAAGGAGGAGGAAGTAGTTGCAGAGGATCCCAACGAAGATGCTAAATCCG AGGCACCTACATTCGTCAGTGAGTCTGTAAAGAAGGCGCGCGAGTTTAAG CAGATCCAAGATTTTCGAAAAATACGCGTGGGTCTTGAGTATGAGCAGGA AGATGTGAAGGATCTTGATCACATAGATCTAGAGCTTTTAGAGCAACAGA AGGCCGAGCGTGCGGCAAAGAAAAAGGCTCGCATCCACAACCTCGGTGAA GAGGACGAGGAGTCTAGCGATGGAGCGGACGAGTTTTACTCGGAGGACGA GTACAATGAGGACTTGCAACGCGTTGTGCACAAGAAGGCCAAGTCAAAGA AGCCACAACAGCTGGCCATCACATCGTCTGGTAAATTCCGAGTGGCCAAA ATACAACCTGGTGATTCGGATGGTGCTGGCAGCTCTGACGACGATGGACC CAGCACTTCAAAGGCTCCTCGGTTGACTGCAAAGCAAAAACGCTCCCTGG AGCGCAGTCAGAAACGCAAGAAGATTGGCAGCAACTTTTACGAGACGACA AATGTTAAGAATCGCAATAGAAACAAAAAGAAGGACGCGTAAAATATTAC GTTTACACTCTAGGCTATATTTTCTTGCAAGGAAAAACTACACTTTAAGA ATCCAAATAAAAAGTTGATCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 13452838..13454055 | 2222..1005 | 6000 | 99.5 | Minus |
chr2R | 21145070 | chr2R | 13454110..13454792 | 1008..326 | 3400 | 99.9 | Minus |
chr2R | 21145070 | chr2R | 13455177..13455504 | 328..1 | 1640 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 17565778..17566996 | 2223..1005 | 6095 | 100 | Minus |
2R | 25286936 | 2R | 17567051..17567733 | 1008..326 | 3415 | 100 | Minus |
2R | 25286936 | 2R | 17568118..17568445 | 328..1 | 1640 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 17566977..17568195 | 2223..1005 | 6095 | 100 | Minus |
2R | 25260384 | 2R | 17568250..17568932 | 1008..326 | 3415 | 100 | Minus |
2R | 25260384 | 2R | 17569317..17569644 | 328..1 | 1640 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 13452838..13454053 | 1007..2222 | 99 | <- | Minus |
chr2R | 13454112..13454790 | 328..1006 | 99 | <- | Minus |
chr2R | 13455178..13455504 | 1..327 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ngp-RA | 1..2025 | 118..2142 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ns2-RA | 1..2025 | 118..2142 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ns2-RA | 1..2025 | 118..2142 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ngp-RA | 1..2025 | 118..2142 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ns2-RA | 1..2025 | 118..2142 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ngp-RA | 1..2222 | 1..2222 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ns2-RA | 1..2222 | 1..2222 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ns2-RA | 12..2233 | 1..2222 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ngp-RA | 1..2222 | 1..2222 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Ns2-RA | 12..2233 | 1..2222 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17565779..17566994 | 1007..2222 | 100 | <- | Minus |
2R | 17567053..17567731 | 328..1006 | 100 | <- | Minus |
2R | 17568119..17568445 | 1..327 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17565779..17566994 | 1007..2222 | 100 | <- | Minus |
2R | 17567053..17567731 | 328..1006 | 100 | <- | Minus |
2R | 17568119..17568445 | 1..327 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17565779..17566994 | 1007..2222 | 100 | <- | Minus |
2R | 17567053..17567731 | 328..1006 | 100 | <- | Minus |
2R | 17568119..17568445 | 1..327 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 13453284..13454499 | 1007..2222 | 100 | <- | Minus |
arm_2R | 13454558..13455236 | 328..1006 | 100 | <- | Minus |
arm_2R | 13455624..13455950 | 1..327 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17566978..17568193 | 1007..2222 | 100 | <- | Minus |
2R | 17568252..17568930 | 328..1006 | 100 | <- | Minus |
2R | 17569318..17569644 | 1..327 | 100 | Minus |
Translation from 117 to 2141
> SD10213.pep MPKVRSTPGKPRTQGFNHSNHSMNPERPKSGLKGVAHPRTKGTIKRLQMY RNFKAKRDRTGKILTPAPFQGRLPAGTMARVEPTPKWFSNSRVISQTALQ KFQDEIGKAVKDPYQVIMKPSQLPVTLLNEAAKYKRVHLLDTESFDSTFG PKKQRKRVSLKVRDLEDLSKAADDQADKYDSAKDLDLIREDTGEKKAVRD WVFGAGQSKRIWNELHKVVDASDVLLQVLDARDPMGTRSKYIEEFLRKEK PHKHLFFILNKVDLVPVWVTQRWVAILSAEYPTIAFHASLQHPFGKGALI NLFRQLGKLHLDKKQISVGFIGYPNVGKSSVINALRSKKVCKVAPIAGET KVWQYITLMKRIFLIDCPGVVYPTAETDTEKVLKGVVRVELVTNPEDYVD SLLKRVRPEYISKNYKIEHWNTSTHFLEQLAQKTGKLLKGGEPDVTVTAR MVLNDWQRGKLPFYVPPEGFAVPKSQEGKEEEVVAEDPNEDAKSEAPTFV SESVKKAREFKQIQDFRKIRVGLEYEQEDVKDLDHIDLELLEQQKAERAA KKKARIHNLGEEDEESSDGADEFYSEDEYNEDLQRVVHKKAKSKKPQQLA ITSSGKFRVAKIQPGDSDGAGSSDDDGPSTSKAPRLTAKQKRSLERSQKR KKIGSNFYETTNVKNRNRNKKKDA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13248-PA | 676 | GF13248-PA | 1..676 | 1..674 | 3280 | 93.2 | Plus |
Dana\GF17911-PA | 581 | GF17911-PA | 93..421 | 161..469 | 483 | 34.5 | Plus |
Dana\GF21278-PA | 605 | GF21278-PA | 319..500 | 299..467 | 223 | 32.8 | Plus |
Dana\GF15352-PA | 575 | GF15352-PA | 333..492 | 316..470 | 182 | 32.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21043-PA | 674 | GG21043-PA | 1..674 | 1..674 | 3555 | 99 | Plus |
Dere\GG16794-PA | 581 | GG16794-PA | 93..421 | 161..468 | 476 | 34.6 | Plus |
Dere\GG12698-PA | 607 | GG12698-PA | 321..509 | 299..476 | 225 | 31.2 | Plus |
Dere\GG21249-PA | 575 | GG21249-PA | 333..491 | 316..468 | 188 | 34.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20960-PA | 682 | GH20960-PA | 1..682 | 1..674 | 3157 | 88 | Plus |
Dgri\GH18066-PA | 581 | GH18066-PA | 138..419 | 209..463 | 472 | 36.2 | Plus |
Dgri\GH11875-PA | 611 | GH11875-PA | 319..507 | 292..467 | 225 | 30.5 | Plus |
Dgri\GH10880-PA | 570 | GH10880-PA | 332..489 | 316..466 | 181 | 32.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ns2-PA | 674 | CG6501-PA | 1..674 | 1..674 | 3490 | 100 | Plus |
Ns1-PA | 581 | CG3983-PA | 88..571 | 156..635 | 486 | 29.2 | Plus |
Ns3-PB | 606 | CG14788-PB | 320..508 | 299..476 | 212 | 31.2 | Plus |
Ns3-PA | 606 | CG14788-PA | 320..508 | 299..476 | 212 | 31.2 | Plus |
Ns4-PA | 575 | CG9320-PA | 333..540 | 316..509 | 174 | 28.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21297-PA | 678 | GI21297-PA | 1..678 | 1..674 | 3228 | 89.6 | Plus |
Dmoj\GI23744-PA | 583 | GI23744-PA | 140..427 | 209..468 | 475 | 36.8 | Plus |
Dmoj\GI15663-PA | 613 | GI15663-PA | 321..509 | 292..467 | 226 | 32.5 | Plus |
Dmoj\GI18253-PA | 574 | GI18253-PA | 335..494 | 316..470 | 187 | 32.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10621-PA | 676 | GL10621-PA | 1..676 | 1..674 | 3259 | 90.5 | Plus |
Dper\GL21923-PA | 583 | GL21923-PA | 138..427 | 209..475 | 474 | 35.9 | Plus |
Dper\GL14378-PA | 602 | GL14378-PA | 311..497 | 294..467 | 226 | 30.3 | Plus |
Dper\GL18517-PA | 577 | GL18517-PA | 333..490 | 316..466 | 189 | 34.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19643-PA | 676 | GA19643-PA | 1..676 | 1..674 | 3250 | 90.3 | Plus |
Dpse\GA26447-PA | 583 | GA26447-PA | 138..427 | 209..475 | 474 | 35.9 | Plus |
Dpse\GA13246-PA | 602 | GA13246-PA | 311..497 | 294..467 | 226 | 30.3 | Plus |
Dpse\GA21698-PA | 577 | GA21698-PA | 333..490 | 316..466 | 189 | 34.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19971-PA | 674 | GM19971-PA | 1..674 | 1..674 | 3552 | 99.1 | Plus |
Dsec\GM15388-PA | 581 | GM15388-PA | 93..440 | 161..493 | 483 | 33.4 | Plus |
Dsec\GM18974-PA | 607 | GM18974-PA | 321..509 | 299..476 | 225 | 31.2 | Plus |
Dsec\GM23366-PA | 575 | GM23366-PA | 333..492 | 316..470 | 185 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25465-PA | 674 | GD25465-PA | 1..674 | 1..674 | 3566 | 99.4 | Plus |
Dsim\GD20254-PA | 328 | GD20254-PA | 12..187 | 313..493 | 342 | 40.3 | Plus |
Dsim\GD24278-PA | 575 | GD24278-PA | 333..492 | 316..470 | 185 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20899-PA | 682 | GJ20899-PA | 1..682 | 1..674 | 3112 | 88.4 | Plus |
Dvir\GJ10591-PA | 581 | GJ10591-PA | 93..425 | 161..468 | 471 | 34.2 | Plus |
Dvir\GJ19196-PA | 611 | GJ19196-PA | 319..507 | 292..467 | 225 | 30.5 | Plus |
Dvir\GJ17511-PA | 576 | GJ17511-PA | 338..532 | 316..496 | 200 | 30.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21401-PA | 681 | GK21401-PA | 1..681 | 1..674 | 3153 | 89 | Plus |
Dwil\GK13906-PA | 579 | GK13906-PA | 139..426 | 209..468 | 462 | 36.1 | Plus |
Dwil\GK10107-PA | 610 | GK10107-PA | 321..502 | 299..467 | 220 | 31.1 | Plus |
Dwil\GK14912-PA | 576 | GK14912-PA | 335..491 | 317..466 | 188 | 33.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13986-PA | 674 | GE13986-PA | 1..674 | 1..674 | 3558 | 99 | Plus |
Dyak\GE26110-PA | 581 | GE26110-PA | 93..421 | 161..468 | 475 | 34.6 | Plus |
Dyak\GE16528-PA | 572 | GE16528-PA | 321..474 | 299..476 | 200 | 29.3 | Plus |
Dyak\GE12344-PA | 575 | GE12344-PA | 333..492 | 316..470 | 186 | 33.9 | Plus |
Translation from 117 to 2141
> SD10213.hyp MPKVRSTPGKPRTQGFNHSNHSMNPERPKSGLKGVAHPRTKGTIKRLQMY RNFKAKRDRTGKILTPAPFQGRLPAGTMARVEPTPKWFSNSRVISQTALQ KFQDEIGKAVKDPYQVIMKPSQLPVTLLNEAAKYKRVHLLDTESFDSTFG PKKQRKRVSLKVRDLEDLSKAADDQADKYDSAKDLDLIREDTGEKKAVRD WVFGAGQSKRIWNELHKVVDASDVLLQVLDARDPMGTRSKYIEEFLRKEK PHKHLFFILNKVDLVPVWVTQRWVAILSAEYPTIAFHASLQHPFGKGALI NLFRQLGKLHLDKKQISVGFIGYPNVGKSSVINALRSKKVCKVAPIAGET KVWQYITLMKRIFLIDCPGVVYPTAETDTEKVLKGVVRVELVTNPEDYVD SLLKRVRPEYISKNYKIEHWNTSTHFLEQLAQKTGKLLKGGEPDVTVTAR MVLNDWQRGKLPFYVPPEGFAVPKSQEGKEEEVVAEDPNEDAKSEAPTFV SESVKKAREFKQIQDFRKIRVGLEYEQEDVKDLDHIDLELLEQQKAERAA KKKARIHNLGEEDEESSDGADEFYSEDEYNEDLQRVVHKKAKSKKPQQLA ITSSGKFRVAKIQPGDSDGAGSSDDDGPSTSKAPRLTAKQKRSLERSQKR KKIGSNFYETTNVKNRNRNKKKDA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ns2-PA | 674 | CG6501-PA | 1..674 | 1..674 | 3490 | 100 | Plus |
Ns1-PA | 581 | CG3983-PA | 88..571 | 156..635 | 486 | 29.2 | Plus |
Ns3-PB | 606 | CG14788-PB | 320..508 | 299..476 | 212 | 31.2 | Plus |
Ns3-PA | 606 | CG14788-PA | 320..508 | 299..476 | 212 | 31.2 | Plus |
Ns4-PA | 575 | CG9320-PA | 333..540 | 316..509 | 174 | 28.1 | Plus |