Clone SD10272 Report

Search the DGRC for SD10272

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:102
Well:72
Vector:pOT2
Associated Gene/TranscriptMsp300-RF
Protein status:SD10272.pep: gold
Preliminary Size:2651
Sequenced Size:2628

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18251 2001-01-01 Release 2 assignment
CG18252 2001-01-01 Release 2 assignment
CG33549 2001-11-09 Blastp of sequenced clone
Msp-300 2008-04-29 Release 5.5 accounting
Msp-300 2008-08-15 Release 5.9 accounting
Msp-300 2008-12-18 5.12 accounting

Clone Sequence Records

SD10272.complete Sequence

2628 bp (2628 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069852

> SD10272.complete
CAGCGTATTTTAGACTCGTATTCGCGATTCGTACCATACATATATGTGTA
TAGAAAGAGAGCAGAAGAAAGAAAGAGGAGAATCGCTACATTTGTTAAAT
TTGAATTACCCGTTTCGTTATAAAAAATTCGCCATGTGTCTTCGGCAAGG
CGCAAATTGAAATTGAGCAAAAGTAAAAATACAACAAAATCGCCAACCAG
ATAGACATCGATATCGAAAAGCCAACGGCTAACGTCATCAGCCATTTAAA
ATCTATAAAAGACCAATAAGAAACCAAACAAAATAAAATAAAGGCCACAA
AAGGAGGCTACACTCGAGAGCCAAAACAGCGACTTAACGCTAGTCAACCA
GCAGGCCCAATCGTTGATCCGCCAGGCGGACGCTCGCAATCGCCAGCTGA
TCGAGCAGGATAACGCCGGACTGAATAGATCTTGGCAGGATCTGGTGCGC
AGCCTGGAACAGCGACGCGACAACCTGCAACAGTTGGCCGAACATTGGGA
CGGCTTCGAGAACAGCCTGCACGCCTGGGAAAAGGCACTTGGTCGACTGG
AGGACAAGTTCCGCAATGTCGATCCGACTGTAAGATCCCGACGTCACTTG
GAAGATACGAAGAATGCCATTCAGGAACTGCGTGAAGAATCAAATCAACT
TAAATCATCACATAAAGAAATCGAGGCGCTCTCTAAATCCATCCTCACAT
TCCTTGGGGAAGTACACAAACCCTCGGCGGAGGCCATACAGGCCAAAGTG
GATAAGTTAGTTGAACAGCAGGCCAAATTGAACGACACTCTGCGCGATAA
GGAGCAACAGGTTAGCAAGGATCTCGAGGAGATCGAGCAAGTCTTCCGTC
GCATCTCGCAGCTGCAGGACAAGCTAAACGCGCTTCACGAGCAACTACAA
TCGGTTCACGTCTACGACGAGCACATAGCCCAAACGGAACAGCTCCTCAT
CACATTGAACAGCCAGGTGCAGCAGGCCGCCGAGGAGAGCAAATTACTGG
TGGCCCAGACAACGGCCCACTACCAGGCCAAACAGAATCAGCTGCCCAGC
GATATTGCCCAGGAGTTTACGGCTCTTGAGCTACTTGCCGAACGCGTCCA
AGTGACCATGGAGACCAAAGAGAAGGATTTCAAGCGGGCCAAGACCGTGC
GCACCGAATATGTGGACGGTGTGGACGAGGTGCAGCGTTGGCTGCTCCAG
GCAGAGGTGCAGGTGCAGGAGAGAAGCCTCACACCCACACAGATGAAGGA
GCTGCTGCAGCGCATTAACCACGAGATCACCGCCATCTACGAACGCTTCA
CCCTGGTCAAGACCAACGGTCAGCTGATCATCGAGAACTGTCGCAACAGC
GAGGAGAAGACGCTGGTGCAGACGACCATCGATCAGTTGGCCGCATCGCT
GGCCCAGGTACGCGGTTGGCTGGATGAGAAGAAGCAGGCGGTGGGCGATA
GTCTGGACGCGTGGACGAGGTTCATGAACCTCTACCAGATCGTGATGTCG
TGGGCATCCGAGAAGCGCAACTTCATTGACCAGACCATCGAGCTGCGCAC
CCTGCCCGAGGCACGCAACAAATTGAACGACTATGTGACGTCTGTGAAGA
GTATTAAACCGATTGTGAAGCATCTGAGCGAAATGGACAAGGAACTGGAG
CACATTGGCCAAGTGACGACTGTGGGCGATCTCAAGGACAAACTGCAGGA
GGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAGAGAGGAACT
CCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAACGCAAGATT
AAGGATATACGCTCCTGGCACGAAAAGACGAAGCAGGGACTGGACTCCTC
GCAGCAGCAGAAGAAACCGCTGCGCGATCAGCTCGGTTTCTGTGAGAAGA
CCCTGGCCGATATCAATGTGCAGAAAACGAAACTGAGACTGTCCATCGAA
AAACTGGAGGTTCATTTCCGCAATGGCATGGGCGGTGATCCGCGCCTGAG
CGAGAACGTCGATGATCTGGTGCGCGTGCTCGACGGCCTCGGCGAATTGG
TCAAGGCCAAGTCGCAGAGCCTCGAGCAGACGCTGGCCCAGATCGACGTT
TACCAACAGCAGATGCAGTCCCTGCGCCAGCGTATCATCCAGGAGGAGCA
ACAGCTCCGCCTGGTGATGGCGCCCACGTACTTGCCGCACGATCGCGAGC
GCGCATTAGCCGAGCAACAGGCATGCCGGGAACGTGTCAAAAATCTGCAT
TCGAAAATAACTGCACGTAATGAGCGCATCAAGTTGTTAATACATCGCGG
CACGCCGGACGATGCCAAGCTAGAGATTTAGGATGCCACAACCTTAACCA
TAAGATAAAGCCAATCTAGGACTAGATCAAAGCCAAAGCAGCCACCCCGG
CGTCTTCCGTTTGCCCCTGCCACCGATTTCCTTCTCCCAGGAACGGTGGC
TACGGTACAACTGTCAACTGCCGTCATTACTCTAATCAATGAAACATGAC
CCGTGTTTTAGAATTTACTATTATCTATATATATATATATATATATATAT
ACATACATATATACTATTTTACAGAATAAATTAAATTACCGAATTATATT
TATAAAACGCAAAAAAAAAAAAAAAAAA

SD10272.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
Msp-300-RF 2612 Msp-300-RF 1..2612 1..2612 13060 100 Plus
Msp-300-RB 25608 Msp-300-RB 23314..25608 317..2611 11475 100 Plus
Msp-300-RD 37560 Msp-300-RD 23314..25218 317..2221 9525 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 5153348..5154317 777..1746 4850 100 Plus
chr2L 23010047 chr2L 5156964..5157363 2211..2610 1970 99.5 Plus
chr2L 23010047 chr2L 5145486..5145803 1..318 1590 100 Plus
chr2L 23010047 chr2L 5146091..5146399 317..625 1545 100 Plus
chr2L 23010047 chr2L 5154687..5154950 1958..2221 1320 100 Plus
chr2L 23010047 chr2L 5154421..5154636 1746..1961 1080 100 Plus
chr2L 23010047 chr2L 5147829..5147982 623..776 770 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:53:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5154248..5155217 777..1746 4850 100 Plus
2L 23513712 2L 5157864..5158265 2211..2612 1980 99.5 Plus
2L 23513712 2L 5146386..5146703 1..318 1590 100 Plus
2L 23513712 2L 5146991..5147299 317..625 1545 100 Plus
2L 23513712 2L 5155587..5155850 1958..2221 1320 100 Plus
2L 23513712 2L 5155321..5155536 1746..1961 1080 100 Plus
2L 23513712 2L 5148729..5148882 623..776 770 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5154248..5155217 777..1746 4850 100 Plus
2L 23513712 2L 5157864..5158265 2211..2612 1980 99.5 Plus
2L 23513712 2L 5146386..5146703 1..318 1590 100 Plus
2L 23513712 2L 5146991..5147299 317..625 1545 100 Plus
2L 23513712 2L 5155587..5155850 1958..2221 1320 100 Plus
2L 23513712 2L 5155321..5155536 1746..1961 1080 100 Plus
2L 23513712 2L 5148729..5148882 623..776 770 100 Plus
Blast to na_te.dros performed 2019-03-16 16:03:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\BuT4 1447 Dbuz\BuT4 BUT4 1447bp 1193..1235 73..32 122 79.1 Minus

SD10272.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:03:46 Download gff for SD10272.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 5145486..5145802 1..317 100 -> Plus
chr2L 5146093..5146398 318..624 99 -> Plus
chr2L 5147831..5147982 625..776 100 -> Plus
chr2L 5153348..5154317 777..1746 100 -> Plus
chr2L 5154422..5154634 1747..1959 100 -> Plus
chr2L 5154689..5154949 1960..2220 100 -> Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:46:33 Download gff for SD10272.complete
Subject Subject Range Query Range Percent Splice Strand
Msp-300-RB 23133..25149 314..2331 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:57:02 Download gff for SD10272.complete
Subject Subject Range Query Range Percent Splice Strand
Msp-300-RB 23133..25149 314..2331 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:27:31 Download gff for SD10272.complete
Subject Subject Range Query Range Percent Splice Strand
Msp-300-RB 23133..25149 314..2331 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:39:52 Download gff for SD10272.complete
Subject Subject Range Query Range Percent Splice Strand
Msp-300-RB 23133..25149 314..2331 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:55:27 Download gff for SD10272.complete
Subject Subject Range Query Range Percent Splice Strand
Msp300-RB 23133..25149 314..2331 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:46:32 Download gff for SD10272.complete
Subject Subject Range Query Range Percent Splice Strand
Msp-300-RF 1..2610 1..2610 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:57:02 Download gff for SD10272.complete
Subject Subject Range Query Range Percent Splice Strand
Msp-300-RF 1..2610 1..2610 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:27:31 Download gff for SD10272.complete
Subject Subject Range Query Range Percent Splice Strand
Msp-300-RF 1..2610 1..2610 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:39:52 Download gff for SD10272.complete
Subject Subject Range Query Range Percent Splice Strand
Msp-300-RB 23135..25428 317..2610 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:55:27 Download gff for SD10272.complete
Subject Subject Range Query Range Percent Splice Strand
Msp300-RF 1..2610 1..2610 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:03:46 Download gff for SD10272.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5146386..5146703 1..318 100 -> Plus
2L 5146993..5147298 319..624 100 -> Plus
2L 5148731..5148882 625..776 100 -> Plus
2L 5154248..5155217 777..1746 100 -> Plus
2L 5155322..5155534 1747..1959 100 -> Plus
2L 5155589..5155849 1960..2220 100 -> Plus
2L 5157874..5158263 2221..2610 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:03:46 Download gff for SD10272.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5146386..5146703 1..318 100 -> Plus
2L 5146993..5147298 319..624 100 -> Plus
2L 5148731..5148882 625..776 100 -> Plus
2L 5154248..5155217 777..1746 100 -> Plus
2L 5155322..5155534 1747..1959 100 -> Plus
2L 5155589..5155849 1960..2220 100 -> Plus
2L 5157874..5158263 2221..2610 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:03:46 Download gff for SD10272.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5146386..5146703 1..318 100 -> Plus
2L 5146993..5147298 319..624 100 -> Plus
2L 5148731..5148882 625..776 100 -> Plus
2L 5154248..5155217 777..1746 100 -> Plus
2L 5155322..5155534 1747..1959 100 -> Plus
2L 5155589..5155849 1960..2220 100 -> Plus
2L 5157874..5158263 2221..2610 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:27:31 Download gff for SD10272.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5155589..5155849 1960..2220 100 -> Plus
arm_2L 5155322..5155534 1747..1959 100 -> Plus
arm_2L 5146386..5146703 1..318 100 -> Plus
arm_2L 5146993..5147298 319..624 100 -> Plus
arm_2L 5148731..5148882 625..776 100 -> Plus
arm_2L 5154248..5155217 777..1746 100 -> Plus
arm_2L 5157874..5158263 2221..2610 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:22:57 Download gff for SD10272.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5146386..5146703 1..318 100 -> Plus
2L 5146993..5147298 319..624 100 -> Plus
2L 5148731..5148882 625..776 100 -> Plus
2L 5154248..5155217 777..1746 100 -> Plus
2L 5155322..5155534 1747..1959 100 -> Plus
2L 5155589..5155849 1960..2220 100 -> Plus
2L 5157874..5158263 2221..2610 100   Plus

SD10272.hyp Sequence

Translation from 1107 to 2330

> SD10272.hyp
METKEKDFKRAKTVRTEYVDGVDEVQRWLLQAEVQVQERSLTPTQMKELL
QRINHEITAIYERFTLVKTNGQLIIENCRNSEEKTLVQTTIDQLAASLAQ
VRGWLDEKKQAVGDSLDAWTRFMNLYQIVMSWASEKRNFIDQTIELRTLP
EARNKLNDYVTSVKSIKPIVKHLSEMDKELEHIGQVTTVGDLKDKLQEAE
DAKISVEAVLLERNSLLQEACEEWDQCERKIKDIRSWHEKTKQGLDSSQQ
QKKPLRDQLGFCEKTLADINVQKTKLRLSIEKLEVHFRNGMGGDPRLSEN
VDDLVRVLDGLGELVKAKSQSLEQTLAQIDVYQQQMQSLRQRIIQEEQQL
RLVMAPTYLPHDRERALAEQQACRERVKNLHSKITARNERIKLLIHRGTP
DDAKLEI*

SD10272.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
Msp300-PF 407 CG42768-PF 1..407 1..407 2062 100 Plus
Msp300-PB 8382 CG42768-PB 7976..8382 1..407 2062 100 Plus
Msp300-PM 6685 CG42768-PM 1..380 1..380 1894 98.4 Plus
Msp300-PE 9606 CG42768-PE 1..380 1..380 1894 98.4 Plus
Msp300-PG 13540 CG42768-PG 1..380 1..380 1894 98.4 Plus

SD10272.pep Sequence

Translation from 1107 to 2330

> SD10272.pep
METKEKDFKRAKTVRTEYVDGVDEVQRWLLQAEVQVQERSLTPTQMKELL
QRINHEITAIYERFTLVKTNGQLIIENCRNSEEKTLVQTTIDQLAASLAQ
VRGWLDEKKQAVGDSLDAWTRFMNLYQIVMSWASEKRNFIDQTIELRTLP
EARNKLNDYVTSVKSIKPIVKHLSEMDKELEHIGQVTTVGDLKDKLQEAE
DAKISVEAVLLERNSLLQEACEEWDQCERKIKDIRSWHEKTKQGLDSSQQ
QKKPLRDQLGFCEKTLADINVQKTKLRLSIEKLEVHFRNGMGGDPRLSEN
VDDLVRVLDGLGELVKAKSQSLEQTLAQIDVYQQQMQSLRQRIIQEEQQL
RLVMAPTYLPHDRERALAEQQACRERVKNLHSKITARNERIKLLIHRGTP
DDAKLEI*

SD10272.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14378-PA 8003 GF14378-PA 7597..8003 1..407 2104 97.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25055-PA 8391 GG25055-PA 7985..8391 1..407 2119 98.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10367-PA 8390 GH10367-PA 7984..8390 1..407 2007 91.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
Msp300-PF 407 CG42768-PF 1..407 1..407 2062 100 Plus
Msp300-PB 8382 CG42768-PB 7976..8382 1..407 2062 100 Plus
Msp300-PG 13540 CG42768-PG 1..380 1..380 1894 98.4 Plus
Msp300-PE 9606 CG42768-PE 1..380 1..380 1894 98.4 Plus
Msp300-PM 6685 CG42768-PM 1..380 1..380 1894 98.4 Plus
Msp300-PL 12308 CG42768-PL 7976..8369 1..393 1882 95.2 Plus
Msp300-PI 11999 CG42768-PI 7617..7987 1..371 1878 100 Plus
Msp300-PH 11986 CG42768-PH 7617..7987 1..371 1878 100 Plus
Msp300-PD 12345 CG42768-PD 7976..8346 1..371 1878 100 Plus
Msp300-PK 11917 CG42768-PK 7548..7918 1..371 1878 100 Plus
Msp300-PJ 7962 CG42768-PJ 3580..3950 1..371 1878 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21368-PA 681 GI21368-PA 275..681 1..407 2044 94.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18808-PA 4542 GL18808-PA 1..380 1..380 1936 94.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25805-PA 18482 GA25805-PA 7960..8339 1..380 1940 94.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18531-PA 8290 GM18531-PA 7884..8290 1..407 2138 99 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:40:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23326-PA 2547 GD23326-PA 1446..1825 1..380 1978 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11158-PA 8387 GJ11158-PA 7981..8387 1..407 2035 93.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24496-PA 7988 GK24496-PA 7582..7988 1..407 2050 94.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11346-PA 8015 GE11346-PA 7609..8015 1..407 2127 98.8 Plus