Clone SD10385 Report

Search the DGRC for SD10385

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:103
Well:85
Vector:pOT2
Associated Gene/TranscriptCG13784-RB
Protein status:SD10385.pep: gold
Preliminary Size:1555
Sequenced Size:1323

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13784 2001-11-09 Blastp of sequenced clone
CG13784 2003-01-01 Sim4 clustering to Release 3
CG13784 2008-04-29 Release 5.5 accounting
CG13784 2008-08-15 Release 5.9 accounting
CG13784 2008-12-18 5.12 accounting

Clone Sequence Records

SD10385.complete Sequence

1323 bp (1323 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069857

> SD10385.complete
GTTGATCCGCGGACAGTTTTTCCGCAAACTCGCAGAGGAAATGCAAACTG
TGGCGAGGTGAAAGGAAAACTGACCACCGAAAGTGCGAAGAAGAACGAAA
ATTGATACAACAGCAAGCGACAGCAATTAGCGAATGAATAAGTACGATTT
TCCGGAACAATAATAATAGCAACAACAGCAACAACAACAACAACGGCTGC
AGCCACAACAAAAATTTAACTCAATTAACGGAAAAGGCAAACGGGGGAAA
ATGCAATTGAAATGCCGAGAGCATTTATGAAGTGTGCTGATGTGTTTGCG
TAGAAATGGAGCGATTTGTGATTGCAGCGCTTTGCTCGTCTAGTGTTTTC
CGCTGCCAGAAAAGTGTGCGCAGGAAAATCGGTGACGATTCGTGAAAAAA
GGGGCATAGAAAATTCGGTGAAAATTCAATACAAAAAAAACGCGGAAAAC
GAAAACACAGGAAAAATTAAAAGAGCGACAAAGAGTGAGAGCGTGCGAGA
GCAATAGGGAAATAGAAAATAAATATCTTCGCTGCCTGCGTGTGGGTGTG
CGTCAGTGTGTGTGTGTGTGTGTGCAAAAGTAGAAGATCAAAGCGAAACG
ACGAAAAACAAGCACAGCAACAACAACACACAGCTGACTTCCTTTCTTTC
CTTCCTGCATTACACTGTTCAACAAACAATAGTTATAACCGCAAACGATG
CGAAATCCAGTAACTACAACAACGACTACTTCCAATCGCCGGCTTTTAAA
CTAGTCAAAAAATCAAATCAATAACATAAACTACACATATCCGCTAAACG
ACAAAACCTAAAACGAAAAATAAATTTCAAAACACAAAGTAAACGAATAA
ACTAAATATAACCAAATTTCCAGTAAACAGAGATAGATCACAATGGATTG
GATCATCAACGATGAGATGGGCCTGACGGTCGGTCACGTGGTGGGCTGGG
CCGCCGCCTCCGCAATGGTTATTGGGGGCGTGATCCCCTACGTGCCCCAA
TACATTGAGATCAAAAAAACGCAGGACGCGGAGGGATTCTCTCTGTACGT
GTGCCTGGCGCTGCTGGTGGCCAACTCGCTGAGAATACTCTTCTGATACT
GGAATACTAGATACATAATAGATACCTAGGAAACTAAAACATTACTAGCA
TCCGTACGAAACTAATTAAATTCATTACCTAATGCTCCATAATGTTAACA
AAAGTGCTTAAATGTGAAAGCTCAAAATTTTGCAAGTAATTATGACGATT
TCATATCCAAATATGCCATTTTTGAGCAATAAATCAATCATGAAAGGCAA
AAAAAAAAAAAAAAAAAAAAAAA

SD10385.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG13784-RB 1332 CG13784-RB 30..1328 1..1302 6365 99.3 Plus
CG13784.a 1190 CG13784.a 30..1122 1..1096 5335 99.2 Plus
CG13784-RC 3908 CG13784-RC 210..431 874..1095 1050 98.1 Plus
CG13784-RC 3908 CG13784-RC 69..209 1..141 690 99.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 7217920..7219011 1095..1 5320 99.3 Minus
chr2L 23010047 chr2L 7217662..7217865 1298..1095 1020 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:53:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7218909..7220000 1095..1 5320 99.3 Minus
2L 23513712 2L 7218647..7218854 1302..1095 1040 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7218909..7220000 1095..1 5330 99.2 Minus
2L 23513712 2L 7218647..7218854 1302..1095 1040 100 Minus
Blast to na_te.dros performed 2019-03-16 23:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\mini-me 4622 Dpse\mini-me DPSEMINIME 4622bp 4128..4217 500..411 135 65.6 Minus
BS 5142 BS BS 5142bp 1931..2110 27..211 120 54.8 Plus
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 1403..1455 575..634 111 75 Plus

SD10385.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:59:26 Download gff for SD10385.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 7217662..7217864 1096..1298 100 <- Minus
chr2L 7217920..7218803 212..1095 95 == Minus
chr2L 7218857..7219011 1..155 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:06:08 Download gff for SD10385.complete
Subject Subject Range Query Range Percent Splice Strand
CG13784-RC 1..208 893..1100 97   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:31:35 Download gff for SD10385.complete
Subject Subject Range Query Range Percent Splice Strand
CG13784-RB 1..204 893..1096 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:27:17 Download gff for SD10385.complete
Subject Subject Range Query Range Percent Splice Strand
CG13784-RB 1..204 893..1096 98   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:59:15 Download gff for SD10385.complete
Subject Subject Range Query Range Percent Splice Strand
CG13784-RC 1..208 893..1100 97   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:06:23 Download gff for SD10385.complete
Subject Subject Range Query Range Percent Splice Strand
CG13784-RB 1..204 893..1096 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:10:03 Download gff for SD10385.complete
Subject Subject Range Query Range Percent Splice Strand
CG13784-RB 30..1324 1..1298 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:31:35 Download gff for SD10385.complete
Subject Subject Range Query Range Percent Splice Strand
CG13784-RB 30..1324 1..1298 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:27:17 Download gff for SD10385.complete
Subject Subject Range Query Range Percent Splice Strand
CG13784-RB 34..1328 1..1298 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:59:15 Download gff for SD10385.complete
Subject Subject Range Query Range Percent Splice Strand
CG13784-RB 30..1324 1..1298 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:23 Download gff for SD10385.complete
Subject Subject Range Query Range Percent Splice Strand
CG13784-RB 34..1328 1..1298 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:59:26 Download gff for SD10385.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7218651..7218853 1096..1298 100 <- Minus
2L 7218909..7220000 1..1095 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:59:26 Download gff for SD10385.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7218651..7218853 1096..1298 100 <- Minus
2L 7218909..7220000 1..1095 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:59:26 Download gff for SD10385.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7218651..7218853 1096..1298 100 <- Minus
2L 7218909..7220000 1..1095 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:27:17 Download gff for SD10385.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7218651..7218853 1096..1298 100 <- Minus
arm_2L 7218909..7220000 1..1095 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:35:44 Download gff for SD10385.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7218909..7220000 1..1095 99   Minus
2L 7218651..7218853 1096..1298 100 <- Minus

SD10385.hyp Sequence

Translation from 892 to 1095

> SD10385.hyp
MDWIINDEMGLTVGHVVGWAAASAMVIGGVIPYVPQYIEIKKTQDAEGFS
LYVCLALLVANSLRILF*

SD10385.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:15:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13784-PB 67 CG13784-PB 1..67 1..67 345 100 Plus
CG13784-PD 275 CG13784-PD 1..67 1..67 345 100 Plus
CG13784-PC 283 CG13784-PC 1..67 1..67 345 100 Plus
CG13784-PE 839 CG13784-PE 1..67 1..67 345 100 Plus
CG13784-PF 969 CG13784-PF 1..67 1..67 345 100 Plus

SD10385.pep Sequence

Translation from 892 to 1095

> SD10385.pep
MDWIINDEMGLTVGHVVGWAAASAMVIGGVIPYVPQYIEIKKTQDAEGFS
LYVCLALLVANSLRILF*

SD10385.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14035-PA 887 GF14035-PA 1..67 1..67 343 94 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23545-PA 905 GG23545-PA 1..67 1..67 366 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13156-PA 1006 GH13156-PA 1..67 1..67 353 95.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG13784-PB 67 CG13784-PB 1..67 1..67 345 100 Plus
CG13784-PD 275 CG13784-PD 1..67 1..67 345 100 Plus
CG13784-PC 283 CG13784-PC 1..67 1..67 345 100 Plus
CG13784-PE 839 CG13784-PE 1..67 1..67 345 100 Plus
CG13784-PF 969 CG13784-PF 1..67 1..67 345 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17798-PA 996 GI17798-PA 1..67 1..67 356 97 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19236-PA 958 GL19236-PA 1..67 1..67 364 98.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12524-PA 1025 GA12524-PA 1..67 1..67 364 98.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13609-PA 817 GM13609-PA 1..67 1..67 366 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22507-PA 817 GD22507-PA 1..67 1..67 366 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17622-PA 973 GJ17622-PA 1..67 1..67 355 95.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24733-PA 734 GK24733-PA 1..67 1..67 364 98.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:35:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18371-PA 865 GE18371-PA 1..67 1..67 366 100 Plus