Clone SD10395 Report

Search the DGRC for SD10395

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:103
Well:95
Vector:pOT2
Associated Gene/TranscriptTsp42Ed-RA
Protein status:SD10395.pep: gold
Preliminary Size:1113
Sequenced Size:1016

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12846 2002-01-01 Sim4 clustering to Release 2
CG12846 2002-05-04 Blastp of sequenced clone
CG12846 2003-01-01 Sim4 clustering to Release 3
Tsp42Ed 2008-04-29 Release 5.5 accounting
Tsp42Ed 2008-08-15 Release 5.9 accounting
Tsp42Ed 2008-12-18 5.12 accounting

Clone Sequence Records

SD10395.complete Sequence

1016 bp (1016 high quality bases) assembled on 2002-05-04

GenBank Submission: AY102700

> SD10395.complete
ATCTCTACCACTGCAGCAACGCTTTTCTTATCGCCGCTAAATTCAGAGCT
AAAATCTAACAGAGCTTTTCGCGATAGGAAATGCGATCATAAAAATATTG
TTATATATCAGACTTTTTCAGTATCAAGCGGACCACGAACGAAATCGCAT
CGAACGTCTTACTCTTAAATCGAACACAAGTGATATAAAGTACATCTCAG
CAATGGATTGCGGCGGCGTTTTTGTGAAATATGTGCTGTTCATATTCAAC
ATACTGTTTGTGATATGCGGCATTTTGCTTATCACCTTCGGCTCTATCAT
GGTGTCCACCATAAAGGACTTCTCGGGCGTCGGCGAGACCTTCACGGCCA
ACAGCGTGGCCATCATCATCCTGGTCCTTGGCTGCGTAGTCTTCCTGGTA
GCCTTCATGGGATGCTGCGGCGCCATACGCGAGAATTCCTGTGCTCTGAC
CTCGTACTCTGTGGTCATGCTGGTGCTGCTGGTTAGTCAGCTAGCTCTCA
TTATCTACGTGTGGGTGGACCATGTGCAGATACAGCAATCTTTGGAGAAG
ATCGTCCAGACCATATGGGATCAACGCAAGACCGATGCCCTCCTCATGGA
CACACTGCAGCGATCGTTCAAGTGCTGCGGCTTGAACGGCTTCGCTGATT
ACGGCATTACGTATCCCGCCTCCTGCTGCGACTCGCCCTCCAATGGAACC
TGCGCACTAACCCAAGTCATGACGCGATCCAGTTGCCTGAAGGCCGTTGA
TTCCTTCTGGGACACCAACGTGAGCATCATCAAGTACGCTGGCCTGGGTG
TGACTGCTGTTGAGCTTGTGGCCTTCATTTTCGCCTGCTGCCTGGCCAAT
CAGACCCGCAACTCGCAGAGACGCCAGAACTACTAAACGATGAAACGCCA
TTAGTAACATAGTATTAGGATTATCTCCCGACCCTCTTTAACGTCATAAA
GTCAATATGAATAAATAAAACAAAGTGCTTCGCATGCTTACTGTATATAA
AAAAAAAAAAAAAAAA

SD10395.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ed-RA 1181 Tsp42Ed-RA 1..1003 1..1000 4785 98.8 Plus
Tsp42Ed.a 889 Tsp42Ed.a 263..811 454..1000 2630 98.9 Plus
Tsp42Ed.a 889 Tsp42Ed.a 1..263 1..262 1245 98.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2898995..2899257 262..1 1235 98.9 Minus
chr2R 21145070 chr2R 2897506..2897704 814..616 995 100 Minus
chr2R 21145070 chr2R 2898066..2898258 454..262 920 98.4 Minus
chr2R 21145070 chr2R 2897263..2897450 998..813 830 97.3 Minus
chr2R 21145070 chr2R 2897835..2897997 616..454 815 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:53:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:55:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7011592..7011854 262..1 1235 98.9 Minus
2R 25286936 2R 7010103..7010301 814..616 995 100 Minus
2R 25286936 2R 7010663..7010855 454..262 920 98.4 Minus
2R 25286936 2R 7009858..7010047 1000..813 840 97.4 Minus
2R 25286936 2R 7010432..7010594 616..454 800 99.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7012791..7013053 262..1 1245 98.8 Minus
2R 25260384 2R 7011302..7011500 814..616 995 100 Minus
2R 25260384 2R 7011862..7012054 454..262 920 98.4 Minus
2R 25260384 2R 7011057..7011246 1000..813 850 97.3 Minus
2R 25260384 2R 7011631..7011793 616..454 800 99.3 Minus
Blast to na_te.dros performed on 2019-03-16 18:55:41 has no hits.

SD10395.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:56:46 Download gff for SD10395.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2897506..2897703 617..814 100 <- Minus
chr2R 2897835..2897996 455..616 100 <- Minus
chr2R 2897263..2897448 815..998 97 <- Minus
chr2R 2898066..2898257 263..454 98 <- Minus
chr2R 2898995..2899257 1..262 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:06:09 Download gff for SD10395.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 1..684 203..886 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:52:24 Download gff for SD10395.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 1..684 203..886 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:28:50 Download gff for SD10395.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 1..684 203..886 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:45:03 Download gff for SD10395.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 1..684 203..886 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:09 Download gff for SD10395.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 1..684 203..886 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:30:34 Download gff for SD10395.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 1..1001 1..998 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:52:24 Download gff for SD10395.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 1..1001 1..998 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:50 Download gff for SD10395.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 1..886 116..998 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:45:04 Download gff for SD10395.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 1..1001 1..998 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:09 Download gff for SD10395.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp42Ed-RA 1..886 116..998 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:56:46 Download gff for SD10395.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7010663..7010854 263..454 98 <- Minus
2R 7010103..7010300 617..814 100 <- Minus
2R 7010432..7010593 455..616 99 <- Minus
2R 7009860..7010045 815..998 97 <- Minus
2R 7011592..7011854 1..262 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:56:46 Download gff for SD10395.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7010663..7010854 263..454 98 <- Minus
2R 7010103..7010300 617..814 100 <- Minus
2R 7010432..7010593 455..616 99 <- Minus
2R 7009860..7010045 815..998 97 <- Minus
2R 7011592..7011854 1..262 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:56:46 Download gff for SD10395.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7010663..7010854 263..454 98 <- Minus
2R 7010103..7010300 617..814 100 <- Minus
2R 7010432..7010593 455..616 99 <- Minus
2R 7009860..7010045 815..998 97 <- Minus
2R 7011592..7011854 1..262 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:50 Download gff for SD10395.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2897608..2897805 617..814 100 <- Minus
arm_2R 2897937..2898098 455..616 99 <- Minus
arm_2R 2898168..2898359 263..454 98 <- Minus
arm_2R 2897365..2897550 815..998 97 <- Minus
arm_2R 2899097..2899359 1..262 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:17:27 Download gff for SD10395.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7012791..7013053 1..262 98   Minus
2R 7011862..7012053 263..454 98 <- Minus
2R 7011059..7011244 815..998 97 <- Minus
2R 7011302..7011499 617..814 100 <- Minus
2R 7011631..7011792 455..616 99 <- Minus

SD10395.pep Sequence

Translation from 202 to 885

> SD10395.pep
MDCGGVFVKYVLFIFNILFVICGILLITFGSIMVSTIKDFSGVGETFTAN
SVAIIILVLGCVVFLVAFMGCCGAIRENSCALTSYSVVMLVLLVSQLALI
IYVWVDHVQIQQSLEKIVQTIWDQRKTDALLMDTLQRSFKCCGLNGFADY
GITYPASCCDSPSNGTCALTQVMTRSSCLKAVDSFWDTNVSIIKYAGLGV
TAVELVAFIFACCLANQTRNSQRRQNY*

SD10395.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12681-PA 228 GF12681-PA 1..228 1..227 1013 83.3 Plus
Dana\GF13154-PA 226 GF13154-PA 1..226 1..227 527 44.1 Plus
Dana\GF12679-PA 223 GF12679-PA 1..222 1..220 441 41.9 Plus
Dana\GF12682-PA 227 GF12682-PA 1..227 1..227 411 37.1 Plus
Dana\GF12680-PA 228 GF12680-PA 1..223 1..226 362 35.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:59:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10779-PA 227 GG10779-PA 1..227 1..227 1151 97.4 Plus
Dere\GG23240-PA 226 GG23240-PA 1..226 1..227 480 42.4 Plus
Dere\GG23241-PA 222 GG23241-PA 1..221 1..220 413 38.7 Plus
Dere\GG23242-PA 232 GG23242-PA 1..231 1..227 362 33.5 Plus
Dere\GG23243-PA 228 GG23243-PA 1..228 1..227 347 36.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21498-PA 227 GH21498-PA 1..227 1..227 843 68.9 Plus
Dgri\GH21494-PA 226 GH21494-PA 1..226 1..227 517 43.7 Plus
Dgri\GH21496-PA 223 GH21496-PA 1..222 1..220 434 39.6 Plus
Dgri\GH21495-PA 223 GH21495-PA 1..222 1..220 431 40.1 Plus
Dgri\GH21499-PA 230 GH21499-PA 1..230 1..227 378 37.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ed-PB 227 CG12846-PB 1..227 1..227 1176 100 Plus
Tsp42Ed-PA 227 CG12846-PA 1..227 1..227 1176 100 Plus
Tsp42Ea-PC 226 CG18817-PC 1..226 1..227 530 41.9 Plus
Tsp42Ea-PB 226 CG18817-PB 1..226 1..227 530 41.9 Plus
Tsp42Ea-PA 226 CG18817-PA 1..226 1..227 530 41.9 Plus
CG30160-PA 222 CG30160-PA 1..220 1..219 412 38.5 Plus
Tsp42Eb-PB 222 CG18816-PB 1..220 1..219 412 38.5 Plus
Tsp42Ee-PB 228 CG10106-PB 1..228 1..227 391 36.1 Plus
Tsp42Ee-PA 228 CG10106-PA 1..228 1..227 391 36.1 Plus
Tsp42Ec-PA 232 CG12847-PA 1..231 1..227 365 34.3 Plus
Tsp39D-PB 235 CG8666-PB 1..231 1..221 280 28.9 Plus
Tsp47F-PB 239 CG9033-PB 4..239 3..224 277 27.4 Plus
Tsp42El-PA 217 CG12840-PA 1..217 1..227 265 30.5 Plus
Tsp42Er-PA 211 CG12837-PA 6..211 6..227 234 29.4 Plus
Tsp74F-PB 236 CG5492-PB 7..233 1..216 228 27.3 Plus
Tsp74F-PA 236 CG5492-PA 7..233 1..216 228 27.3 Plus
Tsp29Fa-PC 248 CG9494-PC 11..239 8..219 223 25.9 Plus
Tsp29Fa-PB 248 CG9494-PB 11..239 8..219 223 25.9 Plus
Tsp29Fa-PA 248 CG9494-PA 11..239 8..219 223 25.9 Plus
Tsp42Ei-PB 229 CG12843-PB 1..225 1..226 211 25.1 Plus
Tsp42Ei-PA 229 CG12843-PA 1..225 1..226 211 25.1 Plus
Tsp96F-PB 284 CG6120-PB 10..273 8..226 203 24.3 Plus
Tsp96F-PC 268 CG6120-PC 10..263 8..220 202 24.5 Plus
Tsp96F-PA 268 CG6120-PA 10..263 8..220 202 24.5 Plus
Tsp86D-PB 291 CG4591-PB 31..282 8..217 200 25.7 Plus
Tsp86D-PA 291 CG4591-PA 31..282 8..217 200 25.7 Plus
Tsp86D-PC 316 CG4591-PC 31..282 8..217 200 25.7 Plus
Tsp3A-PB 304 CG10742-PB 43..301 8..224 199 25.8 Plus
Tsp3A-PA 304 CG10742-PA 43..301 8..224 199 25.8 Plus
Tsp42Eg-PA 218 CG12142-PA 1..215 1..227 195 25.4 Plus
Tsp42Ef-PA 220 CG12845-PA 7..220 8..227 192 22 Plus
Tsp26A-PC 277 CG9093-PC 19..262 8..211 183 24.2 Plus
Tsp42En-PB 218 CG12839-PB 1..218 1..227 182 28.6 Plus
Tsp42En-PA 218 CG12839-PA 1..218 1..227 182 28.6 Plus
Tsp26A-PD 275 CG9093-PD 19..187 8..178 180 27.5 Plus
Tsp26A-PB 314 CG9093-PB 19..187 8..178 180 27.5 Plus
Tsp66E-PC 267 CG4999-PC 4..266 2..223 175 24.7 Plus
Tsp66E-PA 267 CG4999-PA 4..266 2..223 175 24.7 Plus
Tsp66E-PB 267 CG4999-PB 4..266 2..223 175 24.7 Plus
Tsp68C-PC 362 CG32136-PC 8..272 9..217 162 27.6 Plus
Tsp68C-PA 362 CG32136-PA 8..272 9..217 162 27.6 Plus
Tsp42Ek-PB 215 CG12841-PB 1..215 1..227 158 25.8 Plus
Tsp42Ek-PA 215 CG12841-PA 1..215 1..227 158 25.8 Plus
Tsp42Eq-PA 219 CG12832-PA 1..218 1..227 153 22.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:59:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19468-PA 227 GI19468-PA 1..227 1..227 953 76.7 Plus
Dmoj\GI19464-PA 226 GI19464-PA 1..226 1..227 515 42.8 Plus
Dmoj\GI19465-PA 223 GI19465-PA 1..222 1..220 454 41 Plus
Dmoj\GI19469-PA 231 GI19469-PA 1..231 1..227 381 39 Plus
Dmoj\GI19466-PA 230 GI19466-PA 1..227 1..222 349 32.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:59:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11136-PA 227 GL11136-PA 1..227 1..227 1035 84.6 Plus
Dper\GL11133-PA 226 GL11133-PA 1..226 1..227 519 43.7 Plus
Dper\GL11135-PA 229 GL11135-PA 1..226 1..225 392 35.5 Plus
Dper\GL11138-PA 252 GL11138-PA 1..252 1..227 371 33.9 Plus
Dper\GL10398-PA 239 GL10398-PA 4..239 3..224 285 29.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11851-PA 227 GA11851-PA 1..227 1..227 1036 84.6 Plus
Dpse\GA15095-PA 226 GA15095-PA 1..226 1..227 519 43.7 Plus
Dpse\GA10076-PA 228 GA10076-PA 1..228 1..227 406 37.3 Plus
Dpse\GA15688-PA 223 GA15688-PA 1..222 1..220 400 40.1 Plus
Dpse\GA11852-PA 229 GA11852-PA 1..226 1..225 376 34.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20827-PA 227 GM20827-PA 1..227 1..227 1155 97.4 Plus
Dsec\GM20912-PA 226 GM20912-PA 1..226 1..227 490 43.2 Plus
Dsec\GM20913-PA 222 GM20913-PA 1..221 1..220 408 39.2 Plus
Dsec\GM20914-PA 232 GM20914-PA 1..231 1..227 363 34.8 Plus
Dsec\GM20915-PA 228 GM20915-PA 1..228 1..227 355 38.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10280-PA 227 GD10280-PA 1..227 1..227 1175 99.6 Plus
Dsim\GD10441-PA 226 GD10441-PA 1..226 1..227 489 43.2 Plus
Dsim\GD10442-PA 222 GD10442-PA 1..221 1..220 409 39.2 Plus
Dsim\GD10443-PA 232 GD10443-PA 1..231 1..227 362 34.8 Plus
Dsim\GD10444-PA 228 GD10444-PA 1..228 1..227 351 37.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15127-PA 227 GJ15127-PA 1..227 1..227 981 78.4 Plus
Dvir\GJ15124-PA 226 GJ15124-PA 1..226 1..227 523 43.2 Plus
Dvir\GJ22923-PA 196 GJ22923-PA 1..196 33..227 412 39.4 Plus
Dvir\GJ15128-PA 230 GJ15128-PA 1..230 1..227 354 36.6 Plus
Dvir\GJ15126-PA 231 GJ15126-PA 17..230 17..227 341 36 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21775-PA 229 GK21775-PA 1..229 1..227 879 76.4 Plus
Dwil\GK21771-PA 226 GK21771-PA 1..226 1..227 528 43.7 Plus
Dwil\GK21772-PA 222 GK21772-PA 1..217 1..216 413 39 Plus
Dwil\GK21776-PA 228 GK21776-PA 1..228 1..227 378 38.2 Plus
Dwil\GK21773-PA 233 GK21773-PA 13..230 13..225 298 30.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\Tsp42Ed-PA 227 GE24279-PA 1..227 1..227 1158 97.4 Plus
Dyak\GE19090-PA 226 GE19090-PA 1..226 1..227 491 43.7 Plus
Dyak\GE19091-PA 222 GE19091-PA 1..221 1..220 404 38.3 Plus
Dyak\GE19092-PA 232 GE19092-PA 1..229 1..224 351 32.9 Plus
Dyak\Tsp42Ee-PA 228 GE19093-PA 1..228 1..227 330 35.9 Plus

SD10395.hyp Sequence

Translation from 202 to 885

> SD10395.hyp
MDCGGVFVKYVLFIFNILFVICGILLITFGSIMVSTIKDFSGVGETFTAN
SVAIIILVLGCVVFLVAFMGCCGAIRENSCALTSYSVVMLVLLVSQLALI
IYVWVDHVQIQQSLEKIVQTIWDQRKTDALLMDTLQRSFKCCGLNGFADY
GITYPASCCDSPSNGTCALTQVMTRSSCLKAVDSFWDTNVSIIKYAGLGV
TAVELVAFIFACCLANQTRNSQRRQNY*

SD10395.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp42Ed-PB 227 CG12846-PB 1..227 1..227 1176 100 Plus
Tsp42Ed-PA 227 CG12846-PA 1..227 1..227 1176 100 Plus
Tsp42Ea-PC 226 CG18817-PC 1..226 1..227 530 41.9 Plus
Tsp42Ea-PB 226 CG18817-PB 1..226 1..227 530 41.9 Plus
Tsp42Ea-PA 226 CG18817-PA 1..226 1..227 530 41.9 Plus