Clone SD10476 Report

Search the DGRC for SD10476

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:104
Well:76
Vector:pOT2
Associated Gene/TranscriptPIG-S-RC
Protein status:SD10476.pep: gold
Preliminary Size:2157
Sequenced Size:1761

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31120 2001-10-10 Blastp of sequenced clone
CG31120 2003-01-01 Sim4 clustering to Release 3
CG31120 2008-04-29 Release 5.5 accounting
CG31120 2008-08-15 Release 5.9 accounting
CG31120 2008-12-18 5.12 accounting

Clone Sequence Records

SD10476.complete Sequence

1761 bp (1761 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061834

> SD10476.complete
CTGCACAAGCCAATTTTTTTATTTTCCCTGGCAAAAATTCACGTTTTTAA
CCGAAAATTTGACTCACAGCATCATGGAAACCTCGAGCTCCAGTCCAGTA
AAGCCCAGGAGAAAAGACAAGGACGAAGATAAGTTCCGGATCGGGGCTAC
ACTAGCATTTATCGTGGTCATCATTGGAATTGGCGTGCCCATGTGGTGGC
GCACCACCACAGTCTACAGAGTCAATTTGCCCTCGACGGAAATTTTGAGT
CTGAGTAAAATTCCGATCAAAACGGCTGTGCAGGTGGCCATCTACACACA
ACAGACCAGTCGTGGCCAGTTGCTCATCGCCGAACTGCAGAACGCCTTCA
GCGACAATGAAATATGGTCTGTGGAATTCAAGCAGCTATCTCCTACGCCA
ATGACCCAGGAAGCACACACGCCAGCTGCTCTGGAGAAGCTGTTGCTGGA
GAACCATGTCCAGAGCGTTGGCGACTTCATGTTCATCGAGTGGCCCAAAC
TGCAGGAGGAGCTGCTACTAACCACCGAAAGATCGGCACTGATGCGAAGT
GATACACCTTCCAACAAAATCGCCCAGCTCCTGCACGCCAAGATCCTGCA
GACGTATCGCATAAATCAAATTTTAAGTACCGATGAGCGGATGGGCGCCA
AGTCGGAAGCTCCGCAACCAGCCTACGATGTGATTGTCTCTGTCCTGAAT
CCGAAACCGAGACTCACCCATGCCAAGTGGAACATAGCAATGGCTGTGAA
GACTTACATTGAGCCCTGGTTGGCTAAGGTGTCCGGTGTTTCCAATTACA
CGGTGCGATCGCAGTGGAAGTACCGGGTGGCCATCGAGGCTGATCTCAAG
CAGGTGCGCGACCAGAGCAAATTGGGGCGACACTACGCCCTCCAGGAAAC
CGCTCTGCCTCATCTGCTGACATCGATTGCCCAGAATCTAAGCGCCAGCA
CCACCGACAAGCCGGCCATCAACCTGGTGGTGTACATTCCACCGTGCCAC
ATCGCTCCGCTTCACATCTACAACAGCAAGGATCAGCGGCTGACGCGGAA
CGACGTGGATGCCTTCATTTCGCCACCCTGGGGTGGCTTCATCATTGCTA
ATCCGCCAGAGCATGTGTGCCTTGCGGCCATGAGCGATCAGGAGGCAGTT
CCCTACCATGTCAGCACCACGGACAACATGCAGGTGATGCTGGACCAGCT
GCACAAGCTGCTCGACATCAGCAGTGAGCTTCAGATGGAGGGCGTTAAGG
TGGTGGATATCGAGCAACTGGAGCCACGTCGCTGGGAGTATGAAGCATAC
CTAAGACGCAGTGCCATTCGACACATATCCACAGCAAGCAGCACGCTCCA
GAGCCTCATCAAACTGTTGGATCAAATCAGCTACATTGTGATAGACGACG
AGGTGGGTGCCGCCATTACAAATTCCTATGCCGACATCTTGGCTGCCAAG
GCTGCTCTTTTGGAGCACCGACTGGCGGACGCTTCGGTGCTGGCCAAGCG
TGCGTTCGTGGCCTCGGAGCGGGGATTCTTTGACGCCAGCCTGCTGGCGC
AGTTGTACTTCCCGGACGAGCAGAAGTACGCCATCTACATTCCACTCTTC
TTGCCCATCATGGTGCCTGTACTGAGTTCCTTCAACATGCTGCGTGGTGT
GCTGCAGGCCAGACGGAAGGAGAAGCAGTCGTAAACGAACCGTAACCAAA
TAGTATCATCCCTCATTAAAACAATATTTTCTTTATAAGCAAAAAAAAAA
AAAAAAAAAAA

SD10476.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG31120-RB 1778 CG31120-RB 25..1764 1..1740 8670 99.8 Plus
CG31120.a 2128 CG31120.a 25..1764 1..1740 8670 99.8 Plus
CG31120-RA 1825 CG31120-RA 25..154 1..130 650 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:43:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 20737013..20737630 1370..753 3090 100 Minus
chr3R 27901430 chr3R 20736398..20736768 1740..1370 1825 99.5 Minus
chr3R 27901430 chr3R 20738379..20738577 557..359 995 100 Minus
chr3R 27901430 chr3R 20737692..20737886 752..558 975 100 Minus
chr3R 27901430 chr3R 20738633..20738775 359..217 715 100 Minus
chr3R 27901430 chr3R 20740889..20741022 134..1 655 99.3 Minus
chr3R 27901430 chr3R 20738831..20738923 219..127 465 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:53:53 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:43:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24913827..24914444 1370..753 3090 100 Minus
3R 32079331 3R 24913212..24913582 1740..1370 1825 99.5 Minus
3R 32079331 3R 24915193..24915391 557..359 995 100 Minus
3R 32079331 3R 24914506..24914700 752..558 975 100 Minus
3R 32079331 3R 24915447..24915589 359..217 715 100 Minus
3R 32079331 3R 24917703..24917836 134..1 655 99.3 Minus
3R 32079331 3R 24915645..24915737 219..127 465 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24654658..24655275 1370..753 3090 100 Minus
3R 31820162 3R 24654043..24654413 1740..1370 1825 99.4 Minus
3R 31820162 3R 24656024..24656222 557..359 995 100 Minus
3R 31820162 3R 24655337..24655531 752..558 975 100 Minus
3R 31820162 3R 24656278..24656420 359..217 715 100 Minus
3R 31820162 3R 24658534..24658667 134..1 655 99.2 Minus
3R 31820162 3R 24656476..24656568 219..127 465 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:43:06 has no hits.

SD10476.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:43:48 Download gff for SD10476.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 20736398..20736767 1371..1740 99 <- Minus
chr3R 20737013..20737630 753..1370 100 <- Minus
chr3R 20737692..20737886 558..752 100 <- Minus
chr3R 20738379..20738576 360..557 100 <- Minus
chr3R 20738633..20738772 220..359 100 <- Minus
chr3R 20738831..20738921 129..219 100 <- Minus
chr3R 20740895..20741022 1..128 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:06:16 Download gff for SD10476.complete
Subject Subject Range Query Range Percent Splice Strand
CG31120-RB 1..1611 74..1684 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:37:57 Download gff for SD10476.complete
Subject Subject Range Query Range Percent Splice Strand
CG31120-RB 1..1611 74..1684 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:18:58 Download gff for SD10476.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-S-RC 1..1611 74..1684 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:06:54 Download gff for SD10476.complete
Subject Subject Range Query Range Percent Splice Strand
CG31120-RB 1..1611 74..1684 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:00 Download gff for SD10476.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-S-RC 1..1611 74..1684 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:18:53 Download gff for SD10476.complete
Subject Subject Range Query Range Percent Splice Strand
CG31120-RB 1..1684 1..1684 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:37:56 Download gff for SD10476.complete
Subject Subject Range Query Range Percent Splice Strand
CG31120-RB 25..1760 1..1736 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:58 Download gff for SD10476.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-S-RC 29..1764 1..1736 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:06:54 Download gff for SD10476.complete
Subject Subject Range Query Range Percent Splice Strand
CG31120-RB 1..1684 1..1684 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:00 Download gff for SD10476.complete
Subject Subject Range Query Range Percent Splice Strand
PIG-S-RC 29..1764 1..1736 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:43:48 Download gff for SD10476.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24913212..24913581 1371..1740 99 <- Minus
3R 24913827..24914444 753..1370 100 <- Minus
3R 24914506..24914700 558..752 100 <- Minus
3R 24915193..24915390 360..557 100 <- Minus
3R 24915447..24915586 220..359 100 <- Minus
3R 24915645..24915735 129..219 100 <- Minus
3R 24917709..24917836 1..128 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:43:48 Download gff for SD10476.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24913212..24913581 1371..1740 99 <- Minus
3R 24913827..24914444 753..1370 100 <- Minus
3R 24914506..24914700 558..752 100 <- Minus
3R 24915193..24915390 360..557 100 <- Minus
3R 24915447..24915586 220..359 100 <- Minus
3R 24915645..24915735 129..219 100 <- Minus
3R 24917709..24917836 1..128 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:43:48 Download gff for SD10476.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24913212..24913581 1371..1740 99 <- Minus
3R 24913827..24914444 753..1370 100 <- Minus
3R 24914506..24914700 558..752 100 <- Minus
3R 24915193..24915390 360..557 100 <- Minus
3R 24915447..24915586 220..359 100 <- Minus
3R 24915645..24915735 129..219 100 <- Minus
3R 24917709..24917836 1..128 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:58 Download gff for SD10476.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20738934..20739303 1371..1740 99 <- Minus
arm_3R 20739549..20740166 753..1370 100 <- Minus
arm_3R 20740228..20740422 558..752 100 <- Minus
arm_3R 20740915..20741112 360..557 100 <- Minus
arm_3R 20741169..20741308 220..359 100 <- Minus
arm_3R 20741367..20741457 129..219 100 <- Minus
arm_3R 20743431..20743558 1..128 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:42:53 Download gff for SD10476.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24654043..24654412 1371..1740 99 <- Minus
3R 24654658..24655275 753..1370 100 <- Minus
3R 24655337..24655531 558..752 100 <- Minus
3R 24656024..24656221 360..557 100 <- Minus
3R 24656278..24656417 220..359 100 <- Minus
3R 24656476..24656566 129..219 100 <- Minus
3R 24658540..24658667 1..128 100   Minus

SD10476.hyp Sequence

Translation from 0 to 1683

> SD10476.hyp
CTSQFFYFPWQKFTFLTENLTHSIMETSSSSPVKPRRKDKDEDKFRIGAT
LAFIVVIIGIGVPMWWRTTTVYRVNLPSTEILSLSKIPIKTAVQVAIYTQ
QTSRGQLLIAELQNAFSDNEIWSVEFKQLSPTPMTQEAHTPAALEKLLLE
NHVQSVGDFMFIEWPKLQEELLLTTERSALMRSDTPSNKIAQLLHAKILQ
TYRINQILSTDERMGAKSEAPQPAYDVIVSVLNPKPRLTHAKWNIAMAVK
TYIEPWLAKVSGVSNYTVRSQWKYRVAIEADLKQVRDQSKLGRHYALQET
ALPHLLTSIAQNLSASTTDKPAINLVVYIPPCHIAPLHIYNSKDQRLTRN
DVDAFISPPWGGFIIANPPEHVCLAAMSDQEAVPYHVSTTDNMQVMLDQL
HKLLDISSELQMEGVKVVDIEQLEPRRWEYEAYLRRSAIRHISTASSTLQ
SLIKLLDQISYIVIDDEVGAAITNSYADILAAKAALLEHRLADASVLAKR
AFVASERGFFDASLLAQLYFPDEQKYAIYIPLFLPIMVPVLSSFNMLRGV
LQARRKEKQS*

SD10476.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:25:04
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-S-PC 536 CG44255-PC 1..536 25..560 2716 100 Plus

SD10476.pep Sequence

Translation from 73 to 1683

> SD10476.pep
METSSSSPVKPRRKDKDEDKFRIGATLAFIVVIIGIGVPMWWRTTTVYRV
NLPSTEILSLSKIPIKTAVQVAIYTQQTSRGQLLIAELQNAFSDNEIWSV
EFKQLSPTPMTQEAHTPAALEKLLLENHVQSVGDFMFIEWPKLQEELLLT
TERSALMRSDTPSNKIAQLLHAKILQTYRINQILSTDERMGAKSEAPQPA
YDVIVSVLNPKPRLTHAKWNIAMAVKTYIEPWLAKVSGVSNYTVRSQWKY
RVAIEADLKQVRDQSKLGRHYALQETALPHLLTSIAQNLSASTTDKPAIN
LVVYIPPCHIAPLHIYNSKDQRLTRNDVDAFISPPWGGFIIANPPEHVCL
AAMSDQEAVPYHVSTTDNMQVMLDQLHKLLDISSELQMEGVKVVDIEQLE
PRRWEYEAYLRRSAIRHISTASSTLQSLIKLLDQISYIVIDDEVGAAITN
SYADILAAKAALLEHRLADASVLAKRAFVASERGFFDASLLAQLYFPDEQ
KYAIYIPLFLPIMVPVLSSFNMLRGVLQARRKEKQS*

SD10476.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18678-PA 1037 GF18678-PA 519..1037 18..536 2445 87.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12302-PA 536 GG12302-PA 1..536 1..536 2741 95.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14258-PA 525 GH14258-PA 3..524 14..535 2261 79.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-S-PC 536 CG44255-PC 1..536 1..536 2716 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:40:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23151-PA 527 GI23151-PA 11..526 20..535 2224 79.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:40:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23076-PA 497 GL23076-PA 1..496 40..535 2221 83.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30146-PB 536 GA30146-PB 1..535 1..535 2385 83.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23445-PA 382 GM23445-PA 9..382 163..536 1975 99.2 Plus
Dsec\GM16467-PA 148 GM16467-PA 4..145 20..161 718 96.5 Plus
Dsec\GM17769-PA 135 GM17769-PA 18..131 20..133 565 94.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:40:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18252-PA 536 GD18252-PA 1..536 1..536 2812 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10453-PA 536 GJ10453-PA 19..535 19..535 2286 81 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14273-PA 526 GK14273-PA 7..520 18..531 2185 79.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10757-PA 536 GE10757-PA 1..536 1..536 2750 96.5 Plus