BDGP Sequence Production Resources |
Search the DGRC for SD10560
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 105 |
Well: | 60 |
Vector: | pOT2 |
Associated Gene/Transcript | MED30-RA |
Protein status: | SD10560.pep: gold |
Preliminary Size: | 1340 |
Sequenced Size: | 1112 |
Gene | Date | Evidence |
---|---|---|
CG17183 | 2001-01-01 | Release 2 assignment |
CG17183 | 2003-01-01 | Sim4 clustering to Release 3 |
CG17183 | 2003-01-13 | Blastp of sequenced clone |
MED30 | 2008-04-29 | Release 5.5 accounting |
MED30 | 2008-08-15 | Release 5.9 accounting |
MED30 | 2008-12-18 | 5.12 accounting |
1112 bp (1112 high quality bases) assembled on 2003-01-13
GenBank Submission: AY061627
> SD10560.complete CATTTGCCAAAGTTTATCGTTCTGCGTGATATTTTGTTTATTTTATAAGA ACGTTGCAAAATGTGGAAATACGGTCAAAACCAGGGTAATCAGGGACCAT CGAGCGGCGGCGGAGGAGGCGGGGGCCCCAACATGATGCCGATGGGTGGA TTTGGCATGCAGCACGGCAATATGCAGCAAATGCACATGTCGCCTCAACA TCAACAGCAGCAACAACAAATGGGCATGATGGGCGGCCCGGGTAGCATGC AGATGAATCCCCAAGGACCTGGAGGTCCTGGCGGCCTGATGCCCGGCATG TCTCCGCAGCACCAGATGCAGCAACAGCAGCAGCAGCAGATGATGCAGCA GCAAATGATGGTGCCCCAACAAGGAGTGGGCGTCGGAGTGGGAATGGGCG GTGGTGTGGGAATGGGCGGAGGGGGAGTGGTTCCACAGCAGCAGCAACAG CAGCCCCAACAAAACATGCCCCAGCAGAACATTCCCCAACAGCAACAGCA ACTCAATCCGGTCGCAGGAATTCCACCCGGTGGAGCCGGGGGCAGCAACA ATATGCTGGCTATCTCGCAGCAAAATCCTCACAAGGAGATTAACATTGTG CAGCTGTCCCGTCTCGGTCAGGAAACGGTGCAGGATATCGCCTCGCGCTT CCAGGAGGTCTTCGCCTCCCTCAAGGGCATCCAGCCCACCTCGCACAGGG AAAACAGCTCCGAGAAGAAGGTGCAGGAGTACTTCCGCACCATCCGGCTG CTCTTCAAGAGGGTGCGCATCATCTACGAGAAGTGCAACGACGCCGGAAT GGATTACATGAGCGCCGAGAGTCTGATTCCCTACCGCGATGAGCCGGAAC CGAGAATCGAGCCCTCGCTGTGCGATGAGTACCGGAAAGTCCTGCAGGAG AACCATGAACTCATAGAGACCGTCAAGCTGAAGAACAGGCAGCTACGCGA GATCATCGATCGGACACGCATCATCATCTGGGAGATCAACACCATGCTGG CCATGCGGCGCTCATAGGCATAGGGACTCTAGATGTATAATATAGTATAA ATAAAACTAAGAAACATTGCCAAACAGCAATCGTAAAAAAAAAAAAAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MED30-RA | 1218 | MED30-RA | 129..1215 | 1..1087 | 5435 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 652750..653836 | 1084..1 | 5310 | 99.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 652984..654070 | 1087..1 | 5435 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 652984..654070 | 1087..1 | 5435 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..7112 | 174..549 | 159 | 53.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2674 | 160..509 | 155 | 52.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2601..2958 | 160..502 | 132 | 53.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2360..2568 | 159..369 | 130 | 57.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2742..2947 | 154..358 | 125 | 55.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6793 | 160..219 | 119 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2795..2852 | 192..252 | 117 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6882 | 181..353 | 117 | 55.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6813 | 160..218 | 114 | 70 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2492 | 192..372 | 112 | 55.9 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 652750..653836 | 1..1084 | 96 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED30-RA | 1..957 | 61..1017 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED30-RA | 1..957 | 61..1017 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED30-RA | 1..957 | 61..1017 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED30-RA | 1..957 | 61..1017 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED30-RA | 1..957 | 61..1017 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED30-RA | 129..1212 | 1..1084 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED30-RA | 129..1212 | 1..1084 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED30-RA | 20..1103 | 1..1084 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED30-RA | 129..1212 | 1..1084 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED30-RA | 20..1103 | 1..1084 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 652987..654070 | 1..1084 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 652987..654070 | 1..1084 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 652987..654070 | 1..1084 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 652987..654070 | 1..1084 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 652987..654070 | 1..1084 | 100 | Minus |
Translation from 60 to 1016
> SD10560.pep MWKYGQNQGNQGPSSGGGGGGGPNMMPMGGFGMQHGNMQQMHMSPQHQQQ QQQMGMMGGPGSMQMNPQGPGGPGGLMPGMSPQHQMQQQQQQQMMQQQMM VPQQGVGVGVGMGGGVGMGGGGVVPQQQQQQPQQNMPQQNIPQQQQQLNP VAGIPPGGAGGSNNMLAISQQNPHKEINIVQLSRLGQETVQDIASRFQEV FASLKGIQPTSHRENSSEKKVQEYFRTIRLLFKRVRIIYEKCNDAGMDYM SAESLIPYRDEPEPRIEPSLCDEYRKVLQENHELIETVKLKNRQLREIID RTRIIIWEINTMLAMRRS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10057-PA | 315 | GF10057-PA | 159..315 | 162..318 | 812 | 94.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14652-PA | 326 | GG14652-PA | 170..326 | 162..318 | 824 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16043-PA | 312 | GH16043-PA | 159..312 | 165..318 | 776 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MED30-PA | 318 | CG17183-PA | 1..318 | 1..318 | 1689 | 100 | Plus |
mam-PD | 1594 | CG8118-PD | 574..756 | 5..188 | 199 | 36.9 | Plus |
mam-PB | 1594 | CG8118-PB | 574..756 | 5..188 | 199 | 36.9 | Plus |
mam-PA | 1594 | CG8118-PA | 574..756 | 5..188 | 199 | 36.9 | Plus |
kto-PB | 534 | CG8491-PB | 324..532 | 6..150 | 197 | 35.4 | Plus |
kto-PA | 2531 | CG8491-PA | 2321..2529 | 6..150 | 197 | 35.4 | Plus |
CG32532-PD | 688 | CG32532-PD | 74..246 | 5..157 | 194 | 33.7 | Plus |
mam-PD | 1594 | CG8118-PD | 1113..1300 | 12..161 | 175 | 36.2 | Plus |
mam-PB | 1594 | CG8118-PB | 1113..1300 | 12..161 | 175 | 36.2 | Plus |
mam-PA | 1594 | CG8118-PA | 1113..1300 | 12..161 | 175 | 36.2 | Plus |
MED25-PA | 863 | CG12254-PA | 249..491 | 6..223 | 175 | 29.6 | Plus |
MED25-PA | 863 | CG12254-PA | 670..803 | 34..147 | 175 | 41 | Plus |
CG10555-PB | 926 | CG10555-PB | 707..853 | 5..161 | 173 | 34.1 | Plus |
CG10555-PA | 926 | CG10555-PA | 707..853 | 5..161 | 173 | 34.1 | Plus |
mam-PD | 1594 | CG8118-PD | 872..1032 | 9..149 | 170 | 35.8 | Plus |
mam-PB | 1594 | CG8118-PB | 872..1032 | 9..149 | 170 | 35.8 | Plus |
mam-PA | 1594 | CG8118-PA | 872..1032 | 9..149 | 170 | 35.8 | Plus |
kto-PB | 534 | CG8491-PB | 130..336 | 6..161 | 169 | 31.5 | Plus |
kto-PA | 2531 | CG8491-PA | 2127..2333 | 6..161 | 169 | 31.5 | Plus |
nej-PE | 3266 | CG15319-PE | 2841..3022 | 6..167 | 162 | 31.9 | Plus |
nej-PB | 3276 | CG15319-PB | 2851..3032 | 6..167 | 162 | 31.9 | Plus |
nej-PD | 3276 | CG15319-PD | 2851..3032 | 6..167 | 162 | 31.9 | Plus |
nej-PC | 3282 | CG15319-PC | 2857..3038 | 6..167 | 162 | 31.9 | Plus |
tai-PD | 2026 | CG13109-PD | 1650..1878 | 4..168 | 160 | 31.9 | Plus |
tai-PC | 2026 | CG13109-PC | 1650..1878 | 4..168 | 160 | 31.9 | Plus |
tai-PG | 2047 | CG13109-PG | 1671..1899 | 4..168 | 160 | 31.9 | Plus |
kto-PA | 2531 | CG8491-PA | 1964..2086 | 33..150 | 159 | 41.2 | Plus |
nej-PE | 3266 | CG15319-PE | 263..494 | 12..162 | 159 | 31.6 | Plus |
nej-PB | 3276 | CG15319-PB | 263..494 | 12..162 | 159 | 31.6 | Plus |
nej-PD | 3276 | CG15319-PD | 263..494 | 12..162 | 159 | 31.6 | Plus |
nej-PC | 3282 | CG15319-PC | 263..500 | 12..162 | 159 | 31.2 | Plus |
kto-PB | 534 | CG8491-PB | 259..481 | 1..160 | 158 | 31.6 | Plus |
kto-PB | 534 | CG8491-PB | 225..406 | 24..166 | 157 | 35.7 | Plus |
kto-PA | 2531 | CG8491-PA | 2222..2403 | 24..166 | 157 | 35.7 | Plus |
tai-PH | 1918 | CG13109-PH | 1650..1805 | 4..162 | 157 | 35 | Plus |
tai-PF | 1918 | CG13109-PF | 1650..1805 | 4..162 | 157 | 35 | Plus |
CG10555-PB | 926 | CG10555-PB | 691..827 | 13..173 | 156 | 36 | Plus |
CG10555-PA | 926 | CG10555-PA | 691..827 | 13..173 | 156 | 36 | Plus |
MED15-PA | 749 | CG4184-PA | 225..507 | 10..235 | 156 | 28.2 | Plus |
nej-PE | 3266 | CG15319-PE | 610..786 | 5..176 | 155 | 33.7 | Plus |
nej-PB | 3276 | CG15319-PB | 610..786 | 5..176 | 155 | 33.7 | Plus |
nej-PD | 3276 | CG15319-PD | 610..786 | 5..176 | 155 | 33.7 | Plus |
nej-PC | 3282 | CG15319-PC | 616..792 | 5..176 | 155 | 33.7 | Plus |
tna-PD | 1109 | CG7958-PD | 188..333 | 5..161 | 154 | 36.8 | Plus |
tna-PA | 1135 | CG7958-PA | 214..359 | 5..161 | 154 | 36.8 | Plus |
tna-PB | 1149 | CG7958-PB | 228..373 | 5..161 | 154 | 36.8 | Plus |
tai-PE | 2014 | CG13109-PE | 1650..1866 | 4..168 | 153 | 31.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12307-PA | 318 | GI12307-PA | 163..318 | 163..318 | 778 | 91.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20845-PA | 326 | GL20845-PA | 171..326 | 163..318 | 769 | 91 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14371-PA | 325 | GA14371-PA | 170..325 | 163..318 | 769 | 91 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14266-PA | 316 | GM14266-PA | 1..316 | 1..318 | 1571 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17613-PA | 292 | GD17613-PA | 1..292 | 25..318 | 1459 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13243-PA | 318 | GJ13243-PA | 163..318 | 163..318 | 783 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16688-PA | 300 | GK16688-PA | 145..300 | 163..318 | 743 | 89.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21010-PA | 323 | GE21010-PA | 167..323 | 162..318 | 822 | 96.2 | Plus |
Translation from 60 to 1016
> SD10560.hyp MWKYGQNQGNQGPSSGGGGGGGPNMMPMGGFGMQHGNMQQMHMSPQHQQQ QQQMGMMGGPGSMQMNPQGPGGPGGLMPGMSPQHQMQQQQQQQMMQQQMM VPQQGVGVGVGMGGGVGMGGGGVVPQQQQQQPQQNMPQQNIPQQQQQLNP VAGIPPGGAGGSNNMLAISQQNPHKEINIVQLSRLGQETVQDIASRFQEV FASLKGIQPTSHRENSSEKKVQEYFRTIRLLFKRVRIIYEKCNDAGMDYM SAESLIPYRDEPEPRIEPSLCDEYRKVLQENHELIETVKLKNRQLREIID RTRIIIWEINTMLAMRRS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MED30-PA | 318 | CG17183-PA | 1..318 | 1..318 | 1689 | 100 | Plus |
mam-PD | 1594 | CG8118-PD | 574..756 | 5..188 | 199 | 36.9 | Plus |
mam-PB | 1594 | CG8118-PB | 574..756 | 5..188 | 199 | 36.9 | Plus |
mam-PA | 1594 | CG8118-PA | 574..756 | 5..188 | 199 | 36.9 | Plus |
kto-PB | 534 | CG8491-PB | 324..532 | 6..150 | 197 | 35.4 | Plus |
mam-PD | 1594 | CG8118-PD | 1113..1300 | 12..161 | 175 | 36.2 | Plus |
mam-PB | 1594 | CG8118-PB | 1113..1300 | 12..161 | 175 | 36.2 | Plus |
mam-PA | 1594 | CG8118-PA | 1113..1300 | 12..161 | 175 | 36.2 | Plus |
mam-PD | 1594 | CG8118-PD | 872..1032 | 9..149 | 170 | 35.8 | Plus |
mam-PB | 1594 | CG8118-PB | 872..1032 | 9..149 | 170 | 35.8 | Plus |
mam-PA | 1594 | CG8118-PA | 872..1032 | 9..149 | 170 | 35.8 | Plus |