Clone SD10560 Report

Search the DGRC for SD10560

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:105
Well:60
Vector:pOT2
Associated Gene/TranscriptMED30-RA
Protein status:SD10560.pep: gold
Preliminary Size:1340
Sequenced Size:1112

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17183 2001-01-01 Release 2 assignment
CG17183 2003-01-01 Sim4 clustering to Release 3
CG17183 2003-01-13 Blastp of sequenced clone
MED30 2008-04-29 Release 5.5 accounting
MED30 2008-08-15 Release 5.9 accounting
MED30 2008-12-18 5.12 accounting

Clone Sequence Records

SD10560.complete Sequence

1112 bp (1112 high quality bases) assembled on 2003-01-13

GenBank Submission: AY061627

> SD10560.complete
CATTTGCCAAAGTTTATCGTTCTGCGTGATATTTTGTTTATTTTATAAGA
ACGTTGCAAAATGTGGAAATACGGTCAAAACCAGGGTAATCAGGGACCAT
CGAGCGGCGGCGGAGGAGGCGGGGGCCCCAACATGATGCCGATGGGTGGA
TTTGGCATGCAGCACGGCAATATGCAGCAAATGCACATGTCGCCTCAACA
TCAACAGCAGCAACAACAAATGGGCATGATGGGCGGCCCGGGTAGCATGC
AGATGAATCCCCAAGGACCTGGAGGTCCTGGCGGCCTGATGCCCGGCATG
TCTCCGCAGCACCAGATGCAGCAACAGCAGCAGCAGCAGATGATGCAGCA
GCAAATGATGGTGCCCCAACAAGGAGTGGGCGTCGGAGTGGGAATGGGCG
GTGGTGTGGGAATGGGCGGAGGGGGAGTGGTTCCACAGCAGCAGCAACAG
CAGCCCCAACAAAACATGCCCCAGCAGAACATTCCCCAACAGCAACAGCA
ACTCAATCCGGTCGCAGGAATTCCACCCGGTGGAGCCGGGGGCAGCAACA
ATATGCTGGCTATCTCGCAGCAAAATCCTCACAAGGAGATTAACATTGTG
CAGCTGTCCCGTCTCGGTCAGGAAACGGTGCAGGATATCGCCTCGCGCTT
CCAGGAGGTCTTCGCCTCCCTCAAGGGCATCCAGCCCACCTCGCACAGGG
AAAACAGCTCCGAGAAGAAGGTGCAGGAGTACTTCCGCACCATCCGGCTG
CTCTTCAAGAGGGTGCGCATCATCTACGAGAAGTGCAACGACGCCGGAAT
GGATTACATGAGCGCCGAGAGTCTGATTCCCTACCGCGATGAGCCGGAAC
CGAGAATCGAGCCCTCGCTGTGCGATGAGTACCGGAAAGTCCTGCAGGAG
AACCATGAACTCATAGAGACCGTCAAGCTGAAGAACAGGCAGCTACGCGA
GATCATCGATCGGACACGCATCATCATCTGGGAGATCAACACCATGCTGG
CCATGCGGCGCTCATAGGCATAGGGACTCTAGATGTATAATATAGTATAA
ATAAAACTAAGAAACATTGCCAAACAGCAATCGTAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

SD10560.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
MED30-RA 1218 MED30-RA 129..1215 1..1087 5435 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 652750..653836 1084..1 5310 99.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:53:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 652984..654070 1087..1 5435 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 652984..654070 1087..1 5435 100 Minus
Blast to na_te.dros performed 2019-03-15 19:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..7112 174..549 159 53.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2674 160..509 155 52.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2601..2958 160..502 132 53.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2360..2568 159..369 130 57.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2742..2947 154..358 125 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6793 160..219 119 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2795..2852 192..252 117 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6710..6882 181..353 117 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6813 160..218 114 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2492 192..372 112 55.9 Plus

SD10560.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:52:54 Download gff for SD10560.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 652750..653836 1..1084 96   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:06:22 Download gff for SD10560.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 1..957 61..1017 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:58:26 Download gff for SD10560.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 1..957 61..1017 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:16:17 Download gff for SD10560.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 1..957 61..1017 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:49:13 Download gff for SD10560.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 1..957 61..1017 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:09:46 Download gff for SD10560.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 1..957 61..1017 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:15:00 Download gff for SD10560.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 129..1212 1..1084 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:58:26 Download gff for SD10560.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 129..1212 1..1084 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:16:17 Download gff for SD10560.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 20..1103 1..1084 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:49:14 Download gff for SD10560.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 129..1212 1..1084 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:09:46 Download gff for SD10560.complete
Subject Subject Range Query Range Percent Splice Strand
MED30-RA 20..1103 1..1084 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:54 Download gff for SD10560.complete
Subject Subject Range Query Range Percent Splice Strand
3L 652987..654070 1..1084 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:54 Download gff for SD10560.complete
Subject Subject Range Query Range Percent Splice Strand
3L 652987..654070 1..1084 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:52:54 Download gff for SD10560.complete
Subject Subject Range Query Range Percent Splice Strand
3L 652987..654070 1..1084 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:16:17 Download gff for SD10560.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 652987..654070 1..1084 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:20:40 Download gff for SD10560.complete
Subject Subject Range Query Range Percent Splice Strand
3L 652987..654070 1..1084 100   Minus

SD10560.pep Sequence

Translation from 60 to 1016

> SD10560.pep
MWKYGQNQGNQGPSSGGGGGGGPNMMPMGGFGMQHGNMQQMHMSPQHQQQ
QQQMGMMGGPGSMQMNPQGPGGPGGLMPGMSPQHQMQQQQQQQMMQQQMM
VPQQGVGVGVGMGGGVGMGGGGVVPQQQQQQPQQNMPQQNIPQQQQQLNP
VAGIPPGGAGGSNNMLAISQQNPHKEINIVQLSRLGQETVQDIASRFQEV
FASLKGIQPTSHRENSSEKKVQEYFRTIRLLFKRVRIIYEKCNDAGMDYM
SAESLIPYRDEPEPRIEPSLCDEYRKVLQENHELIETVKLKNRQLREIID
RTRIIIWEINTMLAMRRS*

SD10560.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10057-PA 315 GF10057-PA 159..315 162..318 812 94.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14652-PA 326 GG14652-PA 170..326 162..318 824 96.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16043-PA 312 GH16043-PA 159..312 165..318 776 92.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
MED30-PA 318 CG17183-PA 1..318 1..318 1689 100 Plus
mam-PD 1594 CG8118-PD 574..756 5..188 199 36.9 Plus
mam-PB 1594 CG8118-PB 574..756 5..188 199 36.9 Plus
mam-PA 1594 CG8118-PA 574..756 5..188 199 36.9 Plus
kto-PB 534 CG8491-PB 324..532 6..150 197 35.4 Plus
kto-PA 2531 CG8491-PA 2321..2529 6..150 197 35.4 Plus
CG32532-PD 688 CG32532-PD 74..246 5..157 194 33.7 Plus
mam-PD 1594 CG8118-PD 1113..1300 12..161 175 36.2 Plus
mam-PB 1594 CG8118-PB 1113..1300 12..161 175 36.2 Plus
mam-PA 1594 CG8118-PA 1113..1300 12..161 175 36.2 Plus
MED25-PA 863 CG12254-PA 249..491 6..223 175 29.6 Plus
MED25-PA 863 CG12254-PA 670..803 34..147 175 41 Plus
CG10555-PB 926 CG10555-PB 707..853 5..161 173 34.1 Plus
CG10555-PA 926 CG10555-PA 707..853 5..161 173 34.1 Plus
mam-PD 1594 CG8118-PD 872..1032 9..149 170 35.8 Plus
mam-PB 1594 CG8118-PB 872..1032 9..149 170 35.8 Plus
mam-PA 1594 CG8118-PA 872..1032 9..149 170 35.8 Plus
kto-PB 534 CG8491-PB 130..336 6..161 169 31.5 Plus
kto-PA 2531 CG8491-PA 2127..2333 6..161 169 31.5 Plus
nej-PE 3266 CG15319-PE 2841..3022 6..167 162 31.9 Plus
nej-PB 3276 CG15319-PB 2851..3032 6..167 162 31.9 Plus
nej-PD 3276 CG15319-PD 2851..3032 6..167 162 31.9 Plus
nej-PC 3282 CG15319-PC 2857..3038 6..167 162 31.9 Plus
tai-PD 2026 CG13109-PD 1650..1878 4..168 160 31.9 Plus
tai-PC 2026 CG13109-PC 1650..1878 4..168 160 31.9 Plus
tai-PG 2047 CG13109-PG 1671..1899 4..168 160 31.9 Plus
kto-PA 2531 CG8491-PA 1964..2086 33..150 159 41.2 Plus
nej-PE 3266 CG15319-PE 263..494 12..162 159 31.6 Plus
nej-PB 3276 CG15319-PB 263..494 12..162 159 31.6 Plus
nej-PD 3276 CG15319-PD 263..494 12..162 159 31.6 Plus
nej-PC 3282 CG15319-PC 263..500 12..162 159 31.2 Plus
kto-PB 534 CG8491-PB 259..481 1..160 158 31.6 Plus
kto-PB 534 CG8491-PB 225..406 24..166 157 35.7 Plus
kto-PA 2531 CG8491-PA 2222..2403 24..166 157 35.7 Plus
tai-PH 1918 CG13109-PH 1650..1805 4..162 157 35 Plus
tai-PF 1918 CG13109-PF 1650..1805 4..162 157 35 Plus
CG10555-PB 926 CG10555-PB 691..827 13..173 156 36 Plus
CG10555-PA 926 CG10555-PA 691..827 13..173 156 36 Plus
MED15-PA 749 CG4184-PA 225..507 10..235 156 28.2 Plus
nej-PE 3266 CG15319-PE 610..786 5..176 155 33.7 Plus
nej-PB 3276 CG15319-PB 610..786 5..176 155 33.7 Plus
nej-PD 3276 CG15319-PD 610..786 5..176 155 33.7 Plus
nej-PC 3282 CG15319-PC 616..792 5..176 155 33.7 Plus
tna-PD 1109 CG7958-PD 188..333 5..161 154 36.8 Plus
tna-PA 1135 CG7958-PA 214..359 5..161 154 36.8 Plus
tna-PB 1149 CG7958-PB 228..373 5..161 154 36.8 Plus
tai-PE 2014 CG13109-PE 1650..1866 4..168 153 31.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12307-PA 318 GI12307-PA 163..318 163..318 778 91.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20845-PA 326 GL20845-PA 171..326 163..318 769 91 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14371-PA 325 GA14371-PA 170..325 163..318 769 91 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14266-PA 316 GM14266-PA 1..316 1..318 1571 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17613-PA 292 GD17613-PA 1..292 25..318 1459 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13243-PA 318 GJ13243-PA 163..318 163..318 783 92.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16688-PA 300 GK16688-PA 145..300 163..318 743 89.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21010-PA 323 GE21010-PA 167..323 162..318 822 96.2 Plus

SD10560.hyp Sequence

Translation from 60 to 1016

> SD10560.hyp
MWKYGQNQGNQGPSSGGGGGGGPNMMPMGGFGMQHGNMQQMHMSPQHQQQ
QQQMGMMGGPGSMQMNPQGPGGPGGLMPGMSPQHQMQQQQQQQMMQQQMM
VPQQGVGVGVGMGGGVGMGGGGVVPQQQQQQPQQNMPQQNIPQQQQQLNP
VAGIPPGGAGGSNNMLAISQQNPHKEINIVQLSRLGQETVQDIASRFQEV
FASLKGIQPTSHRENSSEKKVQEYFRTIRLLFKRVRIIYEKCNDAGMDYM
SAESLIPYRDEPEPRIEPSLCDEYRKVLQENHELIETVKLKNRQLREIID
RTRIIIWEINTMLAMRRS*

SD10560.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
MED30-PA 318 CG17183-PA 1..318 1..318 1689 100 Plus
mam-PD 1594 CG8118-PD 574..756 5..188 199 36.9 Plus
mam-PB 1594 CG8118-PB 574..756 5..188 199 36.9 Plus
mam-PA 1594 CG8118-PA 574..756 5..188 199 36.9 Plus
kto-PB 534 CG8491-PB 324..532 6..150 197 35.4 Plus
mam-PD 1594 CG8118-PD 1113..1300 12..161 175 36.2 Plus
mam-PB 1594 CG8118-PB 1113..1300 12..161 175 36.2 Plus
mam-PA 1594 CG8118-PA 1113..1300 12..161 175 36.2 Plus
mam-PD 1594 CG8118-PD 872..1032 9..149 170 35.8 Plus
mam-PB 1594 CG8118-PB 872..1032 9..149 170 35.8 Plus
mam-PA 1594 CG8118-PA 872..1032 9..149 170 35.8 Plus