Clone SD10629 Report

Search the DGRC for SD10629

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:106
Well:29
Vector:pOT2
Associated Gene/TranscriptSpred-RA
Protein status:SD10629.pep: gold
Preliminary Size:2671
Sequenced Size:2636

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10155 2001-11-09 Blastp of sequenced clone
CG10155 2003-01-01 Sim4 clustering to Release 3
Spred 2008-04-29 Release 5.5 accounting
Spred 2008-08-15 Release 5.9 accounting
Spred 2008-12-18 5.12 accounting

Clone Sequence Records

SD10629.complete Sequence

2636 bp (2636 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069866

> SD10629.complete
TCAATTGTTGTGAATATATCTGCTTAATTGTAAAAAAACGCCCAATCGGA
AAAAGCACAAATATACGCAAAAAAATTTGCGAACAAGCAGCAAAATGAAT
GAATAGAACCCCCCCAACTCTTTGCAAAGCCCCGCCCCCAAAATTGTGCC
AAAACGCAAGAGACGCAGAGAAACGAAAAGAGGAAGAGTACTGGAGATCG
GCGAGATATTGCAAGTCGGATAACAACAGCAAAAACAACAACGTGGGATT
GGATCGCCTAAGCAACTATTTGACTATCTTCTGGTGTTGTTGTTGTCGCT
CGATTACACTTTTTTCGTTGAAAACGTTTGTGCAGCAGCAGCTCTGAATG
TCTTTATGCTTTAATCATGGTGTATTTCGCCACCAACAACAACAACACCG
ACACTACACGCTGCTATATTAGAATCTTTCTGATAACGAACCATGACAGA
AGGACATGAAAGCGACTTCTTAGTAACAGTACGCGCACAGGTAATGACCA
GAGACGAGAGCACCGAGGGCTGGCTTCCGCTGGCCGGGGGTGGCCTGGCC
AATGTTTCGATCCGGAAGCGGGCTAGGCTATCCCCATTGGCATCGGGTCA
TGACTACATCATCTACGGGCAGAGGATATCCGATCAGAGCGTCATCTTGA
GCTGTGTGATCAATCGTGATCTGAAGTATTACAAAGTAATGCCCACATTT
CATCATTGGCGCGCAGGGAAGCAGCGGAATGGACTCACATTTCAAACGGC
CGCCGATGCGCGAGCCTTTGACAAGGGCGTCCTGCGCGCCTACAACGAGC
TGATCGATGGACTGGCCAAATCGAATCCAACGATAATATGCCCACCGCTA
ACCAAATATGATTCGGTTGGCGAAGATGATGTATTCATGACCCTGGACTT
ACCTGTGGAGAGCGAGAGTTTACAAAAGATCCATTCAAGCCCCGAGGGCA
GCGAGAAAAGTCACAAGAGCGTCAGCAACAACTCCGACTCGGAGAAGCTG
CCTCCGCCGCCCATTCACTACATATCCACGGACAAAACATCGGCCACCAC
GTCGCCGCCAGACGCACCGCCCGCTTCTGCTGCTCCATCGCCGGCGACGG
CCGGCCAGATAGCGGCCAGTGAGAACTACTCGTACGTGACGCTGACGGCG
GTGCACCACGACTACAACTATCCGGTGGTGGACCAGCCGGTGGGGGCGCA
GGTGCTCAATGCTCGCAGGGAGTCGATCAGTGCACTAAAGAAGCGCAACG
CTCTGGAGGCGGCGCAGGCGATGGCGGCGGCTCAGACGGCGGCGGGTGGT
GGACTGGCCTGTCGCGACGGCGGATCGGGAAAGCCACTGCACAAGCCGAA
CGTATCCGACATACTGAAGAAGGAGACGCGCCTGCGATGCCGCTACTGCC
ACGAGCTGTACAGCGAGGACTTCAATCGGCGGGGCGCCTGCGAATATGCC
CCGGATGCGTTTCGCAGCGGCTACGAGTGCATCTCTGGGATGGGCTGTGC
CCGTTGCATGATCTACCACTGCATGAGCGACGCCGAGGGCGAGACGGCCC
AGCATCCGTGCGACTGCAGCGCCAGCGAGGCCGGCTGCAGCAAGCGCTGG
CTGGGCCTGGCGATCCTCTCGTTGTTCGTGCCCTGCCTGTGGTGCTATCC
GCCGCTCCGCGCCTGCCACTTGGCCGGCATCCACTGCGGCCTCTGCGGCG
GGCAGCACAAGCCGCATGTCTGACATTTGGAGGCCCGCTTGCAAGGACAG
CACGATGATGACCCCAGGCCCAGAAGCGAATTCCACTACCACCACTCCGA
GCAGAGCATAATGAACAGCGCCAAGCGTCCGTGGGGCGCCAAGCAGAAGC
AGTCGCAGCAATCACAGCAATCGCAGCGTCATTTTTACAACTGGGAGCTG
TCGCACAGCTTGGGTGCTCCCCAGCATCAGACTCCGCCGTATTTAATGCA
ATCAACTGGCAGGAAGGCACCGCAGAACGATTACGGACGCTTGCTGTTCT
AGGCTTTATCCATGATGACAGCCTGAGGACTCATTTTTGCAAACTGATTA
CCAAGAAGTACTGATTATTTCACCAGATCTACGGTATCTTAAAGATATCT
AAAAGTGGACAAGGAAATGTTTTTCTGATAAATGGCAAGAAAACAATGTT
TTCACACTGTTGAGATGAAAAAATCGTGTCGATGCAAAAGCACAGCTTTT
TCAAATCGGGTGAAAGAAGAATGCGTAAGAAGCAATTCAGCTTGAAAATC
AGTTTGCCAAAATGGGTCTGGGGTTCGATTTTAGTATCATTTCGGTATAC
TCCATTTGAATTGCCATAATTAATTGTATATACAAAAGAGCAGGAAGGAT
TATATATCTAATTTTAATATACTTTTAAAATTGTAACTTATGTTTAGTGC
TCTCGCTTAATTATAGTTTTGTAAAAACGGGCTATTTGTTTTTATTCGTA
ACTGAAACATATTTTTTTGAAAAATCAAAATATTATACAATGATTGTTTT
AGTTTTAGTTGTTTAGGGTTTTTTGCTATTTTACACTTGCTTGTTTACAA
TTCGAAATTGGAGAACAGTATTAAAAGGCCAAGGCGAAGGCAAAGGCGAA
ACGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

SD10629.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
Spred.h 4218 Spred.h 140..2747 1..2607 12880 99.6 Plus
Spred-RA 2877 Spred-RA 140..2747 1..2607 12880 99.6 Plus
Spred.k 3464 Spred.k 140..2747 1..2607 12880 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10648442..10650082 2605..966 8065 99.6 Minus
chr2R 21145070 chr2R 10655299..10655665 462..96 1820 99.7 Minus
chr2R 21145070 chr2R 10651344..10651525 642..461 910 100 Minus
chr2R 21145070 chr2R 10651116..10651285 810..641 850 100 Minus
chr2R 21145070 chr2R 10650205..10650361 965..809 785 100 Minus
chr2R 21145070 chr2R 10656575..10656668 95..1 425 98.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:54:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14761154..14762796 2607..966 8090 99.6 Minus
2R 25286936 2R 14768004..14768370 462..96 1820 99.7 Minus
2R 25286936 2R 14764058..14764239 642..461 895 99.5 Minus
2R 25286936 2R 14763830..14763999 810..641 835 99.4 Minus
2R 25286936 2R 14762919..14763075 965..809 785 100 Minus
2R 25286936 2R 14769278..14769372 95..1 475 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14762353..14763995 2607..966 8100 99.6 Minus
2R 25260384 2R 14769203..14769569 462..96 1820 99.7 Minus
2R 25260384 2R 14765257..14765438 642..461 895 99.4 Minus
2R 25260384 2R 14765029..14765198 810..641 835 99.4 Minus
2R 25260384 2R 14764118..14764274 965..809 785 100 Minus
2R 25260384 2R 14770477..14770571 95..1 475 100 Minus
Blast to na_te.dros performed 2019-03-16 13:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 722..946 2342..2555 160 58.8 Plus

SD10629.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:05:53 Download gff for SD10629.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10651346..10651523 463..640 100 <- Minus
chr2R 10655299..10655665 96..462 99 <- Minus
chr2R 10656575..10656668 1..95 98   Minus
chr2R 10648442..10650082 966..2605 99 <- Minus
chr2R 10650205..10650360 810..965 100 <- Minus
chr2R 10651117..10651285 641..809 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:06:29 Download gff for SD10629.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RA 1..1281 443..1723 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:31:29 Download gff for SD10629.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RA 1..1281 443..1723 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:24:42 Download gff for SD10629.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RC 1..1560 443..2002 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:59:10 Download gff for SD10629.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RA 1..1281 443..1723 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:13:17 Download gff for SD10629.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RC 1..1560 443..2002 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:09:54 Download gff for SD10629.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RA 51..2656 1..2605 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:31:28 Download gff for SD10629.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RA 51..2656 1..2605 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:24:42 Download gff for SD10629.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RA 52..2657 1..2605 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:59:10 Download gff for SD10629.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RA 51..2656 1..2605 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:17 Download gff for SD10629.complete
Subject Subject Range Query Range Percent Splice Strand
Spred-RA 52..2657 1..2605 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:05:53 Download gff for SD10629.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14761156..14762796 966..2605 99 <- Minus
2R 14762919..14763074 810..965 100 <- Minus
2R 14763831..14763999 641..809 99 <- Minus
2R 14764060..14764237 463..640 99 <- Minus
2R 14768004..14768370 96..462 99 <- Minus
2R 14769278..14769372 1..95 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:05:53 Download gff for SD10629.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14761156..14762796 966..2605 99 <- Minus
2R 14762919..14763074 810..965 100 <- Minus
2R 14763831..14763999 641..809 99 <- Minus
2R 14764060..14764237 463..640 99 <- Minus
2R 14768004..14768370 96..462 99 <- Minus
2R 14769278..14769372 1..95 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:05:53 Download gff for SD10629.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14761156..14762796 966..2605 99 <- Minus
2R 14762919..14763074 810..965 100 <- Minus
2R 14763831..14763999 641..809 99 <- Minus
2R 14764060..14764237 463..640 99 <- Minus
2R 14768004..14768370 96..462 99 <- Minus
2R 14769278..14769372 1..95 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:24:42 Download gff for SD10629.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10648661..10650301 966..2605 99 <- Minus
arm_2R 10650424..10650579 810..965 100 <- Minus
arm_2R 10651336..10651504 641..809 99 <- Minus
arm_2R 10651565..10651742 463..640 99 <- Minus
arm_2R 10655509..10655875 96..462 99 <- Minus
arm_2R 10656783..10656877 1..95 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:35:37 Download gff for SD10629.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14765259..14765436 463..640 99 <- Minus
2R 14762355..14763995 966..2605 99 <- Minus
2R 14764118..14764273 810..965 100 <- Minus
2R 14765030..14765198 641..809 99 <- Minus
2R 14769203..14769569 96..462 99 <- Minus
2R 14770477..14770571 1..95 100   Minus

SD10629.pep Sequence

Translation from 442 to 1722

> SD10629.pep
MTEGHESDFLVTVRAQVMTRDESTEGWLPLAGGGLANVSIRKRARLSPLA
SGHDYIIYGQRISDQSVILSCVINRDLKYYKVMPTFHHWRAGKQRNGLTF
QTAADARAFDKGVLRAYNELIDGLAKSNPTIICPPLTKYDSVGEDDVFMT
LDLPVESESLQKIHSSPEGSEKSHKSVSNNSDSEKLPPPPIHYISTDKTS
ATTSPPDAPPASAAPSPATAGQIAASENYSYVTLTAVHHDYNYPVVDQPV
GAQVLNARRESISALKKRNALEAAQAMAAAQTAAGGGLACRDGGSGKPLH
KPNVSDILKKETRLRCRYCHELYSEDFNRRGACEYAPDAFRSGYECISGM
GCARCMIYHCMSDAEGETAQHPCDCSASEAGCSKRWLGLAILSLFVPCLW
CYPPLRACHLAGIHCGLCGGQHKPHV*

SD10629.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13513-PA 529 GF13513-PA 1..429 1..425 1947 92.8 Plus
Dana\GF11575-PA 818 GF11575-PA 147..260 10..129 165 28.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22399-PA 426 GG22399-PA 1..426 1..426 2277 99.3 Plus
Dere\GG21948-PA 834 GG21948-PA 153..285 10..151 171 29.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:10:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21145-PA 514 GH21145-PA 1..411 1..412 1868 86.2 Plus
Dgri\GH22638-PA 830 GH22638-PA 154..267 10..129 172 29.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
Spred-PC 519 CG10155-PC 1..426 1..426 2284 100 Plus
Spred-PA 426 CG10155-PA 1..426 1..426 2284 100 Plus
Spred-PB 404 CG10155-PB 1..404 1..426 2133 94.8 Plus
ena-PG 664 CG15112-PG 6..198 10..209 182 26.3 Plus
ena-PD 687 CG15112-PD 6..198 10..209 182 26.3 Plus
ena-PB 834 CG15112-PB 151..343 10..209 182 26.3 Plus
ena-PE 684 CG15112-PE 6..192 10..209 172 26.8 Plus
ena-PC 684 CG15112-PC 6..192 10..209 172 26.8 Plus
ena-PA 684 CG15112-PA 6..192 10..209 172 26.8 Plus
ena-PF 980 CG15112-PF 302..488 10..209 172 26.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18744-PA 434 GI18744-PA 1..434 1..426 1926 86.6 Plus
Dmoj\GI18914-PA 553 GI18914-PA 167..280 10..129 174 29.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10623-PA 421 GL10623-PA 1..421 1..426 1896 89.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10117-PA 421 GA10117-PA 1..421 1..426 1901 89.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20184-PA 426 GM20184-PA 1..426 1..426 2273 99.3 Plus
Dsec\GM21935-PA 819 GM21935-PA 150..282 10..151 171 29.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25657-PA 426 GD25657-PA 1..426 1..426 2291 100 Plus
Dsim\GD11431-PA 684 GD11431-PA 6..189 10..200 171 27 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21766-PA 431 GJ21766-PA 1..431 1..426 1935 87.4 Plus
Dvir\GJ19769-PA 816 GJ19769-PA 154..267 10..129 172 29.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19514-PA 428 GK19514-PA 1..428 1..426 1847 87 Plus
Dwil\GK17966-PA 888 GK17966-PA 177..290 10..129 169 29.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12288-PA 426 GE12288-PA 1..426 1..426 2279 99.3 Plus
Dyak\GE12021-PA 840 GE12021-PA 157..340 10..200 172 27 Plus

SD10629.hyp Sequence

Translation from 442 to 1722

> SD10629.hyp
MTEGHESDFLVTVRAQVMTRDESTEGWLPLAGGGLANVSIRKRARLSPLA
SGHDYIIYGQRISDQSVILSCVINRDLKYYKVMPTFHHWRAGKQRNGLTF
QTAADARAFDKGVLRAYNELIDGLAKSNPTIICPPLTKYDSVGEDDVFMT
LDLPVESESLQKIHSSPEGSEKSHKSVSNNSDSEKLPPPPIHYISTDKTS
ATTSPPDAPPASAAPSPATAGQIAASENYSYVTLTAVHHDYNYPVVDQPV
GAQVLNARRESISALKKRNALEAAQAMAAAQTAAGGGLACRDGGSGKPLH
KPNVSDILKKETRLRCRYCHELYSEDFNRRGACEYAPDAFRSGYECISGM
GCARCMIYHCMSDAEGETAQHPCDCSASEAGCSKRWLGLAILSLFVPCLW
CYPPLRACHLAGIHCGLCGGQHKPHV*

SD10629.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:30:11
Subject Length Description Subject Range Query Range Score Percent Strand
Spred-PC 519 CG10155-PC 1..426 1..426 2284 100 Plus
Spred-PA 426 CG10155-PA 1..426 1..426 2284 100 Plus
Spred-PB 404 CG10155-PB 1..404 1..426 2133 94.8 Plus
ena-PG 664 CG15112-PG 6..198 10..209 182 26.3 Plus
ena-PD 687 CG15112-PD 6..198 10..209 182 26.3 Plus