Clone SD10657 Report

Search the DGRC for SD10657

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:106
Well:57
Vector:pOT2
Associated Gene/TranscriptFlo1-RA
Protein status:SD10657.pep: gold
Preliminary Size:1884
Sequenced Size:1821

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8200 2001-09-19 Blastp of sequenced clone
CG8200 2003-01-01 Sim4 clustering to Release 3
Flo 2008-04-29 Release 5.5 accounting
Flo 2008-08-15 Release 5.9 accounting
Flo 2008-12-18 5.12 accounting

Clone Sequence Records

SD10657.complete Sequence

1821 bp (1821 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058794

> SD10657.complete
AACCGGTCGGATTTCTGAATCTTAAGCACCGAGTACCTCGGAAATTCTTT
TATACATATTATTAGACGAATAAACAAGGCTACCTGTGGATCGGATAATT
CGCTATATAGTTAATAATCGGAAAACTGTGTTAACCACGCAGATAAAACA
AAAGCTGTTATCAGCAGCAACCCATTTTCTAATATAAATAACAAAAAAGT
GCTGCAGAAATGACTTGGGGATTTGTAACCTGCGGCCCCAACGAGGCTTT
AGTTGTCTCTGGGTGCTGCTACATGAAGCCGCTTTTGGTGCCGGGAGGAC
GAGCATTCGTTTGGCCAGTGGGCCAGCAGGTTCAGCGAATTTCGTTGAAC
ACGATGACCCTCCAGGTAGAGAGTCCTTGCGTGTACACCAGCCAAGGAGT
GCCCATCTCGGTGACAGGCATTGCACAGGTGAAGGTCCAGGGTCAGAACG
AAGACATGCTGCTGACCGCCTGTGAGCAGTTCTTGGGCAAATCAGAGGCA
GAGATCAACCACATCGCCTTGGTCACCCTGGAGGGGCATCAGCGTGCCAT
CATGGGTTCGATGACCGTGGAGGAGATCTACAAGGACCGCAAGAAGTTCA
GCAAGCAGGTGTTTGAGGTGGCCTCCAGCGATTTGGCCAACATGGGAATA
ACCGTGGTTTCCTACACCATCAAGGATTTGCGCGATGAGGAGGGCTACCT
GCGGTCATTGGGTATGGCTCGCACGGCGGAGGTGAAGCGCGATGCCCGCA
TTGGCGAGGCTGAGGCCCGAGCGGAGGCCCACATTAAGGAGGCTATTGCC
GAGGAGCAACGCATGGCCGCACGCTTCCTCAACGATACCGATATTGCCAA
GGCCCAGCGCGACTTTGAGCTGAAGAAGGCAGCATACGATGTGGAAGTGC
AGACCAAAAAGGCCGAGGCCGAGATGGCCTACGAGCTGCAAGCGGCCAAG
ACCAAGCAGCGCATCAAGGAGGAGCAGATGCAGGTGAAGGTGATCGAGCG
CACGCAGGAGATTGCCGTCCAGGAGCAGGAGATCATGCGCCGCGAGCGGG
AGCTGGAGGCCACCATCCGCCGACCGGCCGAGGCGGAGAAGTTCCGCATG
GAGAAATTGGCCGAGGCCAACAAGCAGCGCGTGGTCATGGAAGCCGAGGC
CGAGGCTGAATCGATCAGGATTCGTGGTGAGGCTGAGGCCTTTGCCATTG
CGGCCAAGGCTAAAGCAGAGGCCGAGCAGATGGCCATGAAGGCAGAGGCC
TATCGCGAGTACCGCGAGGCTGCGATGGTGGAGATGCTCCTGGACACACT
GCCAAAGGTTGCCGCCGAGGTGGCTGCTCCACTGTCGCAGGCTAAGAAGA
TCACGATGGTGTCCAGCGGAACTGGCGATATCGGTGCTGCCAAGCTGACC
GGCGAGGTTCTGTCGATCGTCAACAAAGTGCCAGAGCTGGTCAAGAACAT
AACCGGCGTGGACATTGCTCGGTCTGTGCATGCTGGCTAAAAAAGTACCC
AAAAGAAAACCAAAAACACACAAAATTATGTACTCTTCAAAACGAAAATA
AGAAAACAAAAAAGAAATTACGCTATATTGAACGATCGAATACTTCAAAA
CTGAAATCGAACGCATTTAAATTTCTTTATAATTAATATATTATTGAATC
TTTGTGCTAACCCGACAAATTTTGCAACATGTTTTACACACACACACTCA
GAGAGAGGAGCAAAAATATTTTGTATTACATGTATAATGTATTTATATAA
GTGTATTGCACAAAGCGTGGAATAAATATTCTTCCTTGGATCAACAAAAA
AAAAAAAAAAAAAAAAAAAAA

SD10657.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:15:35
Subject Length Description Subject Range Query Range Score Percent Strand
Flo-RA 1862 Flo-RA 57..1852 1..1798 8755 99.2 Plus
Flo-RB 1874 Flo-RB 759..1864 691..1798 5365 99 Plus
Flo.a 1869 Flo.a 759..1859 691..1798 5265 98.6 Plus
Flo-RB 1874 Flo-RB 57..751 1..695 3415 99.4 Plus
Flo.a 1869 Flo.a 57..751 1..695 3415 99.4 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:09:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11454395..11454867 1163..691 2245 98.3 Minus
chr2R 21145070 chr2R 11455303..11455659 693..337 1770 99.7 Minus
chr2R 21145070 chr2R 11453423..11453744 1795..1472 1555 99.4 Minus
chr2R 21145070 chr2R 11456274..11456535 262..1 1265 98.9 Minus
chr2R 21145070 chr2R 11453955..11454121 1472..1306 820 99.4 Minus
chr2R 21145070 chr2R 11454178..11454325 1310..1163 740 100 Minus
chr2R 21145070 chr2R 11455903..11455979 337..261 370 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:54:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:09:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15567243..15567715 1163..691 2305 99.2 Minus
2R 25286936 2R 15568151..15568507 693..337 1770 99.7 Minus
2R 25286936 2R 15566268..15566592 1798..1472 1570 99.4 Minus
2R 25286936 2R 15569118..15569379 262..1 1265 98.9 Minus
2R 25286936 2R 15566803..15566969 1472..1306 820 99.4 Minus
2R 25286936 2R 15567026..15567173 1310..1163 695 98 Minus
2R 25286936 2R 15568751..15568827 337..261 385 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15568442..15568914 1163..691 2305 99.1 Minus
2R 25260384 2R 15569350..15569706 693..337 1770 99.7 Minus
2R 25260384 2R 15567467..15567791 1798..1472 1580 99.3 Minus
2R 25260384 2R 15570317..15570578 262..1 1265 98.8 Minus
2R 25260384 2R 15568002..15568168 1472..1306 820 99.4 Minus
2R 25260384 2R 15568225..15568372 1310..1163 695 97.9 Minus
2R 25260384 2R 15569950..15570026 337..261 385 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:09:45 has no hits.

SD10657.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:10:43 Download gff for SD10657.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11453955..11454119 1308..1472 99 <- Minus
chr2R 11454181..11454324 1164..1307 100 <- Minus
chr2R 11454395..11454865 693..1163 98 <- Minus
chr2R 11455304..11455658 338..692 99 <- Minus
chr2R 11455903..11455978 262..337 98 <- Minus
chr2R 11456275..11456535 1..261 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:06:30 Download gff for SD10657.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-RA 1..1281 210..1490 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:57:07 Download gff for SD10657.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-RA 1..1281 210..1490 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:05:09 Download gff for SD10657.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-1-RA 1..1281 210..1490 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:26:18 Download gff for SD10657.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-RA 1..1281 210..1490 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:36:58 Download gff for SD10657.complete
Subject Subject Range Query Range Percent Splice Strand
Flo1-RA 1..1281 210..1490 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:43:17 Download gff for SD10657.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-RA 24..1816 1..1795 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:57:07 Download gff for SD10657.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-RA 24..1816 1..1795 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:09 Download gff for SD10657.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-1-RA 26..1818 1..1795 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:26:19 Download gff for SD10657.complete
Subject Subject Range Query Range Percent Splice Strand
Flo-RA 24..1816 1..1795 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:58 Download gff for SD10657.complete
Subject Subject Range Query Range Percent Splice Strand
Flo1-RA 26..1818 1..1795 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:10:43 Download gff for SD10657.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15566271..15566591 1473..1795 99 <- Minus
2R 15566803..15566967 1308..1472 99 <- Minus
2R 15567029..15567172 1164..1307 97 <- Minus
2R 15567243..15567713 693..1163 99 <- Minus
2R 15568152..15568506 338..692 99 <- Minus
2R 15568751..15568826 262..337 100 <- Minus
2R 15569119..15569379 1..261 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:10:43 Download gff for SD10657.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15566271..15566591 1473..1795 99 <- Minus
2R 15566803..15566967 1308..1472 99 <- Minus
2R 15567029..15567172 1164..1307 97 <- Minus
2R 15567243..15567713 693..1163 99 <- Minus
2R 15568152..15568506 338..692 99 <- Minus
2R 15568751..15568826 262..337 100 <- Minus
2R 15569119..15569379 1..261 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:10:43 Download gff for SD10657.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15566271..15566591 1473..1795 99 <- Minus
2R 15566803..15566967 1308..1472 99 <- Minus
2R 15567029..15567172 1164..1307 97 <- Minus
2R 15567243..15567713 693..1163 99 <- Minus
2R 15568152..15568506 338..692 99 <- Minus
2R 15568751..15568826 262..337 100 <- Minus
2R 15569119..15569379 1..261 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:09 Download gff for SD10657.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11453776..11454096 1473..1795 99 <- Minus
arm_2R 11454308..11454472 1308..1472 99 <- Minus
arm_2R 11454534..11454677 1164..1307 97 <- Minus
arm_2R 11454748..11455218 693..1163 99 <- Minus
arm_2R 11455657..11456011 338..692 99 <- Minus
arm_2R 11456256..11456331 262..337 100 <- Minus
arm_2R 11456624..11456884 1..261 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:03:30 Download gff for SD10657.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15568002..15568166 1308..1472 99 <- Minus
2R 15568228..15568371 1164..1307 97 <- Minus
2R 15567470..15567790 1473..1795 99 <- Minus
2R 15568442..15568912 693..1163 99 <- Minus
2R 15569351..15569705 338..692 99 <- Minus
2R 15569950..15570025 262..337 100 <- Minus
2R 15570318..15570578 1..261 98   Minus

SD10657.pep Sequence

Translation from 209 to 1489

> SD10657.pep
MTWGFVTCGPNEALVVSGCCYMKPLLVPGGRAFVWPVGQQVQRISLNTMT
LQVESPCVYTSQGVPISVTGIAQVKVQGQNEDMLLTACEQFLGKSEAEIN
HIALVTLEGHQRAIMGSMTVEEIYKDRKKFSKQVFEVASSDLANMGITVV
SYTIKDLRDEEGYLRSLGMARTAEVKRDARIGEAEARAEAHIKEAIAEEQ
RMAARFLNDTDIAKAQRDFELKKAAYDVEVQTKKAEAEMAYELQAAKTKQ
RIKEEQMQVKVIERTQEIAVQEQEIMRRERELEATIRRPAEAEKFRMEKL
AEANKQRVVMEAEAEAESIRIRGEAEAFAIAAKAKAEAEQMAMKAEAYRE
YREAAMVEMLLDTLPKVAAEVAAPLSQAKKITMVSSGTGDIGAAKLTGEV
LSIVNKVPELVKNITGVDIARSVHAG*

SD10657.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 10:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22637-PA 430 GF22637-PA 1..430 1..426 2156 96 Plus
Dana\GF19486-PA 438 GF19486-PA 6..428 7..421 956 47.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 10:18:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22345-PA 430 GG22345-PA 1..430 1..426 2207 98.6 Plus
Dere\GG17854-PA 438 GG17854-PA 6..428 7..421 964 47.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 10:18:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20287-PA 430 GH20287-PA 1..430 1..426 2025 94.2 Plus
Dgri\GH12759-PA 432 GH12759-PA 9..422 15..421 908 45 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
Flo1-PA 426 CG8200-PA 1..426 1..426 2099 100 Plus
Flo1-PB 430 CG8200-PB 1..430 1..426 2084 99.1 Plus
Flo2-PB 425 CG32593-PB 6..415 7..421 961 48.7 Plus
Flo2-PF 425 CG32593-PF 6..415 7..421 961 48.7 Plus
Flo2-PL 440 CG32593-PL 6..415 7..421 961 48.7 Plus
Flo2-PI 435 CG32593-PI 6..425 7..421 955 47.7 Plus
Flo2-PA 438 CG32593-PA 6..428 7..421 950 47.1 Plus
Flo2-PK 438 CG32593-PK 6..428 7..421 950 47.1 Plus
Flo2-PE 438 CG32593-PE 6..428 7..421 950 47.1 Plus
Flo2-PJ 448 CG32593-PJ 6..438 7..421 942 46.2 Plus
Flo2-PM 356 CG32593-PM 10..346 79..421 808 47.8 Plus
Flo2-PG 340 CG32593-PG 32..330 117..421 703 46.2 Plus
Flo2-PH 281 CG32593-PH 1..271 145..421 630 45.8 Plus
Flo2-PD 281 CG32593-PD 1..271 145..421 630 45.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 10:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19457-PA 430 GI19457-PA 1..430 1..426 2029 94.2 Plus
Dmoj\GI15205-PA 429 GI15205-PA 9..419 18..421 907 45.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 10:18:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11508-PA 430 GL11508-PA 1..430 1..426 2156 96 Plus
Dper\GL27073-PA 425 GL27073-PA 5..415 18..421 915 45.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 10:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20892-PA 430 GA20892-PA 1..430 1..426 2156 96 Plus
Dpse\GA23027-PA 438 GA23027-PA 6..428 7..421 954 46.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 10:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20133-PA 430 GM20133-PA 1..430 1..426 2216 99.1 Plus
Dsec\GM12049-PA 438 GM12049-PA 6..428 7..421 964 47.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 10:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25610-PA 430 GD25610-PA 1..430 1..426 2216 99.1 Plus
Dsim\anon-381MEL-PA 438 GD17182-PA 6..428 7..421 964 47.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 10:18:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21208-PA 430 GJ21208-PA 1..430 1..426 2035 94.2 Plus
Dvir\GJ16615-PA 356 GJ16615-PA 10..346 79..421 779 46.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 10:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21951-PA 430 GK21951-PA 1..430 1..426 2146 95.6 Plus
Dwil\GK20117-PA 438 GK20117-PA 6..428 7..421 950 46.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 10:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14146-PA 430 GE14146-PA 1..430 1..426 2212 98.8 Plus
Dyak\GE17157-PA 438 GE17157-PA 6..428 7..421 964 47.1 Plus

SD10657.hyp Sequence

Translation from 209 to 1489

> SD10657.hyp
MTWGFVTCGPNEALVVSGCCYMKPLLVPGGRAFVWPVGQQVQRISLNTMT
LQVESPCVYTSQGVPISVTGIAQVKVQGQNEDMLLTACEQFLGKSEAEIN
HIALVTLEGHQRAIMGSMTVEEIYKDRKKFSKQVFEVASSDLANMGITVV
SYTIKDLRDEEGYLRSLGMARTAEVKRDARIGEAEARAEAHIKEAIAEEQ
RMAARFLNDTDIAKAQRDFELKKAAYDVEVQTKKAEAEMAYELQAAKTKQ
RIKEEQMQVKVIERTQEIAVQEQEIMRRERELEATIRRPAEAEKFRMEKL
AEANKQRVVMEAEAEAESIRIRGEAEAFAIAAKAKAEAEQMAMKAEAYRE
YREAAMVEMLLDTLPKVAAEVAAPLSQAKKITMVSSGTGDIGAAKLTGEV
LSIVNKVPELVKNITGVDIARSVHAG*

SD10657.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
Flo1-PA 426 CG8200-PA 1..426 1..426 2099 100 Plus
Flo1-PB 430 CG8200-PB 1..430 1..426 2084 99.1 Plus
Flo2-PB 425 CG32593-PB 6..415 7..421 961 48.7 Plus
Flo2-PF 425 CG32593-PF 6..415 7..421 961 48.7 Plus
Flo2-PL 440 CG32593-PL 6..415 7..421 961 48.7 Plus