Clone SD10846 Report

Search the DGRC for SD10846

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:108
Well:46
Vector:pOT2
Associated Gene/TranscriptVps45-RA
Protein status:SD10846.pep: gold
Preliminary Size:1725
Sequenced Size:2018

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8228 2002-01-01 Sim4 clustering to Release 2
CG8228 2002-05-18 Blastp of sequenced clone
CG8228 2003-01-01 Sim4 clustering to Release 3
CG8228 2008-04-29 Release 5.5 accounting
CG8228 2008-08-15 Release 5.9 accounting
CG8228 2008-12-18 5.12 accounting

Clone Sequence Records

SD10846.complete Sequence

2018 bp (2018 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119186

> SD10846.complete
AAAAAACATTAATTTCTGATTTTCGCAGTAAATTAGTTAGCAGTCATGAA
TCTGATAAGCGGCATTAAGTTGTACATCGAGAAAATGTGCTCCGAGTCGG
GACCGGGCATGAAAATCATTCTGCTGGACAAGGAGACGACCAGTATAATT
TCGATGGCCTTTAGCCAATCGGACATGCTGCAACGGGAGGTGTACCTATT
TGAGCGCCTGGACTCGGGAAGATCCAACGAGCGGTTAAAGTATCTAAAAT
GCATCGTCTTTATACGCCCCACCAAGCAGAACATCCAGCTACTGGCCAAC
GAGTTGCGGAACCCCAAATACAGCGCCTACTACATTTATTTCAGCAACAT
CATTCCCCGGACGGACATTAAATACTTGGCAGAGTGCGACGAATCCGAAT
CGGTGCGAGAAGTGAAGGAACTGTATGCAGACTACCTGTGCGTCAACCCC
AATCTGTTCTCATTAGGCATTCCCAATTGCATGGCGAATCTTAATTGGCT
GCCGGACGCTCTCAACCGCAGCATGCAGGGCATCACAGCCGTGCTGTTGT
CCCTTAAGCTGAACCCAGTGATCCGGTACCGAGCCGGTTCTCAGGCAGCG
CAGCTTCTGGCCAAGCTCATATACGAGCAAATCACAAAAGAGTCCTCGCT
ATTCGACTTTCGCTCCAACATGGATGGCGCTGCGCCACCGCTGCTGCTTG
TGCTGGACCGCAGGGACGATCCTGTGACGCCGCTTTTGCATCAGTGGACA
TACCAGGCCATGGTGCATGAGTTGCTGCACATAAAAAACAATCGATTGGA
CCTGTCCAATTGCCCCAATGTGCCGAAAGACTTCAAGGAGCTGGTCTTAT
CCGGTGATCAGGATGACTTCTATGGCAACAACATGTACGCCAACTACGGC
GAAATCGGATCTACCATCAAACAACTGATGGAGGAGTTCCAGCGCAAGGC
GAACGACCACAAGAAAGTGGAGAGCATAGCAGACATGAAGAACTTTATTG
AGTCATATCCGCAGTTTAAAAAAATGTCTGGCACTGTGCAAAAGCATTTG
TGTGTGATTGGAGAACTGTCGGCGCTGAGCAACAAGAGGAATCTCTTCGA
GGTTTCCGAACTTGAACAGGAGATCGCTTGCAAGGCGGAGCACTCGGCCC
AGCTGCAGAGAATCAAAAAACTAATTGCCGACGAACGGGTTTCCATCGAT
GATGCTCTTAAGTTGGTGGCACTTTATGCATTGCGATACGAGCGACACGC
CAACTGCGACACATCTGGACTGCTGCAAATAATCAAAACGCGCGGTGGAC
GAGCGGCTATAGTGCCATCGTTGATTGAGTATGCTGGAACCCATGTACGA
CAAGGAGATCTCTTCAATATGGTGCGGATAACGGACGCCGTAAAGCTGAC
ACGGAATTTGATTAAGGGCCTTAAGGGTGTGGAAAATGTCTTCACACAGC
ACACTCCTCTCCTGAAGGAAACTTTGGAGGACGTGTTTAAGGGCCGCGAG
CTGGATCCCCTCTTCCCGGCCATCAATTCAGAGCTTGTGCCATTTCGACG
ACCACCGCAGGAGGTTGTCGTGTTCATTATTGGCGGTGCCACGTACGAGG
AAGCCTTAGCGGTGCACCAGTTAAACAACGCCGGCTATAAAGTCATTCTT
GGCGGCACCACCATCCATAACTCGCAGAGTTTTATCCAAGAGGTCGTGGC
CGCCACTAGTGGCATTCAGTTTAAGCACACCAAATCCATGATCAAGTACT
GTTCCACGGATAACATTTAAAGTCTATTTTGACTAGATAGCCCCAATTAT
ATTGTTAACTATTTATTAACTAAATATGAATGTGCATTATGTATTAAGGT
ATTCCATGCATTGTACCAATTCAAATCCATTGGACTATTTAACCTTTTAA
GCGTAACCATGTAAACATATTTATTGTTATTCTCGAGGGTAACACCAGGC
AACGCCTTGGACAAAATGTATTATATACAACTATGTGTGTACAAAATTAA
AAAAAAAAAAAAAAAAAA

SD10846.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:01:03
Subject Length Description Subject Range Query Range Score Percent Strand
Vps45-RA 2059 Vps45-RA 62..2059 1..1998 9990 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5390266..5391927 338..1998 8230 99.8 Plus
chr3R 27901430 chr3R 5390015..5390214 138..337 1000 100 Plus
chr3R 27901430 chr3R 5389815..5389952 1..138 690 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:54:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:55:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9564432..9566093 338..1999 8310 100 Plus
3R 32079331 3R 9564181..9564380 138..337 1000 100 Plus
3R 32079331 3R 9563981..9564118 1..138 690 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:32:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9305263..9306924 338..1999 8310 100 Plus
3R 31820162 3R 9305012..9305211 138..337 1000 100 Plus
3R 31820162 3R 9304812..9304949 1..138 690 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:56:00 has no hits.

SD10846.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:56:56 Download gff for SD10846.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5389815..5389952 1..138 100 -> Plus
chr3R 5390016..5390214 139..337 100 -> Plus
chr3R 5390266..5391927 338..1998 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:06:45 Download gff for SD10846.complete
Subject Subject Range Query Range Percent Splice Strand
CG8228-RA 1..1725 46..1770 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:41:13 Download gff for SD10846.complete
Subject Subject Range Query Range Percent Splice Strand
Vps45-RA 1..1725 46..1770 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:28:59 Download gff for SD10846.complete
Subject Subject Range Query Range Percent Splice Strand
Vps45-RA 1..1725 46..1770 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:33:31 Download gff for SD10846.complete
Subject Subject Range Query Range Percent Splice Strand
CG8228-RA 1..1725 46..1770 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:31 Download gff for SD10846.complete
Subject Subject Range Query Range Percent Splice Strand
Vps45-RA 1..1725 46..1770 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:15:29 Download gff for SD10846.complete
Subject Subject Range Query Range Percent Splice Strand
CG8228-RA 1..1998 1..1998 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:41:12 Download gff for SD10846.complete
Subject Subject Range Query Range Percent Splice Strand
Vps45-RA 1..1998 1..1998 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:59 Download gff for SD10846.complete
Subject Subject Range Query Range Percent Splice Strand
Vps45-RA 58..2055 1..1998 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:33:31 Download gff for SD10846.complete
Subject Subject Range Query Range Percent Splice Strand
CG8228-RA 1..1998 1..1998 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:31 Download gff for SD10846.complete
Subject Subject Range Query Range Percent Splice Strand
Vps45-RA 58..2055 1..1998 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:56:56 Download gff for SD10846.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9563981..9564118 1..138 100 -> Plus
3R 9564182..9564380 139..337 100 -> Plus
3R 9564432..9566092 338..1998 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:56:56 Download gff for SD10846.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9563981..9564118 1..138 100 -> Plus
3R 9564182..9564380 139..337 100 -> Plus
3R 9564432..9566092 338..1998 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:56:56 Download gff for SD10846.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9563981..9564118 1..138 100 -> Plus
3R 9564182..9564380 139..337 100 -> Plus
3R 9564432..9566092 338..1998 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:59 Download gff for SD10846.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5389703..5389840 1..138 100 -> Plus
arm_3R 5389904..5390102 139..337 100 -> Plus
arm_3R 5390154..5391814 338..1998 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:05:37 Download gff for SD10846.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9305263..9306923 338..1998 100   Plus
3R 9304812..9304949 1..138 100 -> Plus
3R 9305013..9305211 139..337 100 -> Plus

SD10846.pep Sequence

Translation from 45 to 1769

> SD10846.pep
MNLISGIKLYIEKMCSESGPGMKIILLDKETTSIISMAFSQSDMLQREVY
LFERLDSGRSNERLKYLKCIVFIRPTKQNIQLLANELRNPKYSAYYIYFS
NIIPRTDIKYLAECDESESVREVKELYADYLCVNPNLFSLGIPNCMANLN
WLPDALNRSMQGITAVLLSLKLNPVIRYRAGSQAAQLLAKLIYEQITKES
SLFDFRSNMDGAAPPLLLVLDRRDDPVTPLLHQWTYQAMVHELLHIKNNR
LDLSNCPNVPKDFKELVLSGDQDDFYGNNMYANYGEIGSTIKQLMEEFQR
KANDHKKVESIADMKNFIESYPQFKKMSGTVQKHLCVIGELSALSNKRNL
FEVSELEQEIACKAEHSAQLQRIKKLIADERVSIDDALKLVALYALRYER
HANCDTSGLLQIIKTRGGRAAIVPSLIEYAGTHVRQGDLFNMVRITDAVK
LTRNLIKGLKGVENVFTQHTPLLKETLEDVFKGRELDPLFPAINSELVPF
RRPPQEVVVFIIGGATYEEALAVHQLNNAGYKVILGGTTIHNSQSFIQEV
VAATSGIQFKHTKSMIKYCSTDNI*

SD10846.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18478-PA 574 GF18478-PA 1..574 1..574 2937 94.6 Plus
Dana\GF20177-PA 599 GF20177-PA 33..592 17..550 253 20.3 Plus
Dana\GF20604-PA 639 GF20604-PA 30..633 20..558 224 22.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16896-PA 574 GG16896-PA 1..574 1..574 3034 98.4 Plus
Dere\GG24515-PA 639 GG24515-PA 30..633 20..558 274 22.3 Plus
Dere\GG14217-PA 597 GG14217-PA 30..590 16..550 248 20.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19300-PA 574 GH19300-PA 1..574 1..574 2801 92.5 Plus
Dgri\GH11497-PA 638 GH11497-PA 30..633 20..558 257 22.4 Plus
Dgri\GH17352-PA 600 GH17352-PA 43..593 23..550 250 20.1 Plus
Dgri\GH12659-PA 601 GH12659-PA 43..594 23..550 246 20.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
Vps45-PA 574 CG8228-PA 1..574 1..574 2937 100 Plus
Slh-PG 639 CG3539-PG 30..633 20..558 280 22 Plus
Slh-PC 639 CG3539-PC 30..633 20..558 280 22 Plus
Rop-PB 597 CG15811-PB 36..590 19..550 256 20.6 Plus
Rop-PA 597 CG15811-PA 36..590 19..550 256 20.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23516-PA 574 GI23516-PA 1..574 1..574 2789 91.8 Plus
Dmoj\GI16994-PA 639 GI16994-PA 30..638 20..562 262 22.6 Plus
Dmoj\GI21456-PA 610 GI21456-PA 28..610 17..553 183 21.5 Plus
Dmoj\GI21525-PA 399 GI21525-PA 43..392 217..550 180 22.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21496-PA 490 GL21496-PA 15..490 99..574 2407 93.3 Plus
Dper\GL26465-PA 638 GL26465-PA 30..638 20..564 267 22.8 Plus
Dper\GL15772-PA 447 GL15772-PA 30..440 156..550 182 20.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA26299-PA 574 GA26299-PA 1..574 1..574 2934 94.6 Plus
Dpse\GA28872-PA 638 GA28872-PA 30..638 20..564 267 22.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23816-PA 549 GM23816-PA 1..549 1..574 2896 94.9 Plus
Dsec\GM18223-PA 639 GM18223-PA 30..627 20..552 269 22.3 Plus
Dsec\GM14010-PA 597 GM14010-PA 30..590 16..550 248 20.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18625-PA 564 GD18625-PA 1..562 1..562 3006 99.6 Plus
Dsim\GD22831-PA 625 GD22831-PA 30..619 20..558 282 22.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10268-PA 574 GJ10268-PA 1..574 1..574 2779 91.5 Plus
Dvir\Slh-PA 638 GJ24182-PA 30..633 20..558 268 22.7 Plus
Dvir\GJ15999-PA 589 GJ15999-PA 32..582 23..550 243 20.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11253-PA 574 GK11253-PA 1..574 1..574 2888 92.7 Plus
Dwil\GK23735-PA 640 GK23735-PA 30..634 20..558 265 22.6 Plus
Dwil\GK25120-PA 599 GK25120-PA 38..592 19..550 249 20.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25962-PA 574 GE25962-PA 1..574 1..574 3048 99 Plus
Dyak\GE15096-PA 639 GE15096-PA 30..633 20..558 274 22.3 Plus
Dyak\GE20645-PA 597 GE20645-PA 30..590 16..550 248 20.8 Plus

SD10846.hyp Sequence

Translation from 45 to 1769

> SD10846.hyp
MNLISGIKLYIEKMCSESGPGMKIILLDKETTSIISMAFSQSDMLQREVY
LFERLDSGRSNERLKYLKCIVFIRPTKQNIQLLANELRNPKYSAYYIYFS
NIIPRTDIKYLAECDESESVREVKELYADYLCVNPNLFSLGIPNCMANLN
WLPDALNRSMQGITAVLLSLKLNPVIRYRAGSQAAQLLAKLIYEQITKES
SLFDFRSNMDGAAPPLLLVLDRRDDPVTPLLHQWTYQAMVHELLHIKNNR
LDLSNCPNVPKDFKELVLSGDQDDFYGNNMYANYGEIGSTIKQLMEEFQR
KANDHKKVESIADMKNFIESYPQFKKMSGTVQKHLCVIGELSALSNKRNL
FEVSELEQEIACKAEHSAQLQRIKKLIADERVSIDDALKLVALYALRYER
HANCDTSGLLQIIKTRGGRAAIVPSLIEYAGTHVRQGDLFNMVRITDAVK
LTRNLIKGLKGVENVFTQHTPLLKETLEDVFKGRELDPLFPAINSELVPF
RRPPQEVVVFIIGGATYEEALAVHQLNNAGYKVILGGTTIHNSQSFIQEV
VAATSGIQFKHTKSMIKYCSTDNI*

SD10846.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
Vps45-PA 574 CG8228-PA 1..574 1..574 2937 100 Plus
Slh-PG 639 CG3539-PG 30..633 20..558 280 22 Plus
Slh-PC 639 CG3539-PC 30..633 20..558 280 22 Plus
Rop-PB 597 CG15811-PB 36..590 19..550 256 20.6 Plus
Rop-PA 597 CG15811-PA 36..590 19..550 256 20.6 Plus