Clone SD10847 Report

Search the DGRC for SD10847

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:108
Well:47
Vector:pOT2
Associated Gene/TranscriptCG5274-RA
Protein status:SD10847.pep: gold
Preliminary Size:1493
Sequenced Size:1396

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5274 2001-01-01 Release 2 assignment
CG5274 2001-07-04 Blastp of sequenced clone
CG5274 2003-01-01 Sim4 clustering to Release 3
CG5274 2008-04-29 Release 5.5 accounting
CG5274 2008-08-15 Release 5.9 accounting
CG5274 2008-12-18 5.12 accounting

Clone Sequence Records

SD10847.complete Sequence

1396 bp (1396 high quality bases) assembled on 2001-07-04

GenBank Submission: AY052148

> SD10847.complete
ACCATACATTCTTAAAAACCTGTCACTGCTTTGTACAAGATAAAGGACTA
GAGGATGTCGATGTCGATAGACAGCAATAAGCTCTTGCTCCGGAAGGGCG
ATATGAAGCTGGATAATTATCCAACTTGTGCGGTGGAGGCACTTACGCGA
CTGGAAACATTGATTGCCAGCAGGAACAAGCAAAACATGGTGATGCAAAT
TATATCGGAGTTCATATTCCTGGAAAGAACCCCGAAGGATGGCGACGTGC
GAAAGTCGCAGGCGCTGCCCATTAGCCAGATGAATCTGTTCCAGGAGTTC
CAGCTGATCATAGCGCTGATTGAGTACTTTTCGCGACCAGGAAGAGATGC
CACCCGCAACGCCATATTCCTGTCGCTCTTCGGAAGCCACTTGACACCGC
AGCGATCCAAGTTGTTGTCCCGGCTGATCAGCACAGCAGTTTCCGGCTCC
GTGGCCCCGCTGCTCTCCTCTGCCGGCACATGGATGCAACAGGTGGGGTG
CAAGACGCCACTCAGCCTGGAAGTGGCCCAAAATATAGTCAGCGACTTTA
TCTCGTACTCCCGGAAAACCCCCGAGCAACTCAAGCAGCTGCCCATGGTG
GGTCCGCACTTTGCGGCCAACTTTATGGTCGCCGTGGCGGATCTGTACCT
CAATGAGCAGCGTTCGCCGACATTGAATCCACCGCCAGATGCTCTGCTGG
ACACCATAACCGAATGGATGATGGAGAATCCCACTTTGTGTCAGGCCTCG
CAGCAGCCTTTGGTCCTGCCCGCCGGAGCCATAGCCATGCCCTTTACCAC
TCCCCTAGCAGGCCTGCTTCGATGGGTGGTCCTGGCGCCGTTGGTCTCCA
ACCGTTCCGCCTATAGCAATTTGCATCTATCCCTCCTGCGTGCTCTGCAA
CAGCTTGTCAGCAGTGGGGAATCGACAGCGCTGCCCAGTCAAGATCTTAT
GCAGATCGTGAAATCCCTGCAGAGCTACTGCGCACGGCTGGCGGAATCAA
AAACCGATCCCCAAGCGGATGCCGCATATCAGAAGTGCATGGAACGCTTC
GCCCAAGCAGTGCAAATCGCCCTGAGCTCCAACTGCATCACCAATCAGAT
CCAGCTGCTGTGCCTCTTGGAATCTTTACCTCCACACAAGCTGATGAAAA
TCGTCATAGAGGCGCACAAGAAGTAGTTAAATATCAAACACTATAAACGT
CAGTCGGTTAATGCGAGTAATTAATCATTAAAATTAAAATGTAGCTTTTA
CAAATAGATCTAAGACGTTATTAATTAAACATTGAGTCGCTTACAAATCT
TTTAAGCCCAAAAATGTTTGTTTGGTTAAAAGAAGAAAGGGTTTAACTAT
ATTAAAAAACAACAATTTATACCGAAAAAAAAAAAAAAAAAAAAAA

SD10847.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:25:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5274-RA 1441 CG5274-RA 64..1439 1..1376 6850 99.8 Plus
CG5274-RB 1432 CG5274-RB 93..1430 39..1376 6660 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20415205..20416425 1374..154 6090 99.9 Minus
chr3L 24539361 chr3L 20416477..20416630 154..1 740 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:54:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20426197..20427419 1376..154 6100 99.9 Minus
3L 28110227 3L 20427471..20427624 154..1 755 99.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20419297..20420519 1376..154 6100 99.9 Minus
3L 28103327 3L 20420571..20420724 154..1 755 99.3 Minus
Blast to na_te.dros performed 2019-03-15 16:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 6400..6515 1208..1317 122 66.7 Plus

SD10847.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:55:22 Download gff for SD10847.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20415205..20416424 155..1374 99 <- Minus
chr3L 20416477..20416630 1..154 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:06:46 Download gff for SD10847.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RA 1..1122 55..1176 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:11:30 Download gff for SD10847.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RA 1..1122 55..1176 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:12:51 Download gff for SD10847.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RB 1..1122 55..1176 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:42:30 Download gff for SD10847.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RA 1..1122 55..1176 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:20:37 Download gff for SD10847.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RB 1..1122 55..1176 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:03:07 Download gff for SD10847.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RA 1..1374 1..1374 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:11:30 Download gff for SD10847.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RA 1..1374 1..1374 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:12:51 Download gff for SD10847.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RA 1..1374 1..1374 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:42:30 Download gff for SD10847.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RA 1..1374 1..1374 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:20:37 Download gff for SD10847.complete
Subject Subject Range Query Range Percent Splice Strand
CG5274-RA 1..1374 1..1374 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:55:22 Download gff for SD10847.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20426199..20427418 155..1374 99 <- Minus
3L 20427471..20427624 1..154 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:55:22 Download gff for SD10847.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20426199..20427418 155..1374 99 <- Minus
3L 20427471..20427624 1..154 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:55:22 Download gff for SD10847.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20426199..20427418 155..1374 99 <- Minus
3L 20427471..20427624 1..154 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:12:51 Download gff for SD10847.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20420571..20420724 1..154 99   Minus
arm_3L 20419299..20420518 155..1374 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:20:10 Download gff for SD10847.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20419299..20420518 155..1374 99 <- Minus
3L 20420571..20420724 1..154 99   Minus

SD10847.pep Sequence

Translation from 54 to 1175

> SD10847.pep
MSMSIDSNKLLLRKGDMKLDNYPTCAVEALTRLETLIASRNKQNMVMQII
SEFIFLERTPKDGDVRKSQALPISQMNLFQEFQLIIALIEYFSRPGRDAT
RNAIFLSLFGSHLTPQRSKLLSRLISTAVSGSVAPLLSSAGTWMQQVGCK
TPLSLEVAQNIVSDFISYSRKTPEQLKQLPMVGPHFAANFMVAVADLYLN
EQRSPTLNPPPDALLDTITEWMMENPTLCQASQQPLVLPAGAIAMPFTTP
LAGLLRWVVLAPLVSNRSAYSNLHLSLLRALQQLVSSGESTALPSQDLMQ
IVKSLQSYCARLAESKTDPQADAAYQKCMERFAQAVQIALSSNCITNQIQ
LLCLLESLPPHKLMKIVIEAHKK*

SD10847.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24136-PA 373 GF24136-PA 1..373 1..373 1757 88.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13314-PA 373 GG13314-PA 1..373 1..373 1860 94.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16748-PA 355 GH16748-PA 1..354 3..373 1405 77.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG5274-PA 373 CG5274-PA 1..373 1..373 1874 100 Plus
CG5274-PB 373 CG5274-PB 1..373 1..373 1874 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13473-PA 368 GI13473-PA 3..367 4..373 1493 80.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19778-PA 306 GL19778-PA 7..305 74..373 888 58.8 Plus
Dper\GL11907-PA 59 GL11907-PA 1..58 1..58 229 74.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:38:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18778-PA 373 GA18778-PA 1..372 1..373 1706 86.3 Plus
Dpse\GA27109-PA 367 GA27109-PA 17..366 16..373 1026 57.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22217-PA 373 GM22217-PA 1..373 1..373 1937 98.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12189-PA 364 GD12189-PA 1..364 1..373 1878 96.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11836-PA 368 GJ11836-PA 3..367 4..373 1504 80.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20437-PA 367 GK20437-PA 1..366 1..373 1486 79.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22747-PA 373 GE22747-PA 1..373 1..373 1935 97.9 Plus
Dyak\GE22403-PA 373 GE22403-PA 1..373 1..373 1927 97.6 Plus

SD10847.hyp Sequence

Translation from 54 to 1175

> SD10847.hyp
MSMSIDSNKLLLRKGDMKLDNYPTCAVEALTRLETLIASRNKQNMVMQII
SEFIFLERTPKDGDVRKSQALPISQMNLFQEFQLIIALIEYFSRPGRDAT
RNAIFLSLFGSHLTPQRSKLLSRLISTAVSGSVAPLLSSAGTWMQQVGCK
TPLSLEVAQNIVSDFISYSRKTPEQLKQLPMVGPHFAANFMVAVADLYLN
EQRSPTLNPPPDALLDTITEWMMENPTLCQASQQPLVLPAGAIAMPFTTP
LAGLLRWVVLAPLVSNRSAYSNLHLSLLRALQQLVSSGESTALPSQDLMQ
IVKSLQSYCARLAESKTDPQADAAYQKCMERFAQAVQIALSSNCITNQIQ
LLCLLESLPPHKLMKIVIEAHKK*

SD10847.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5274-PA 373 CG5274-PA 1..373 1..373 1874 100 Plus
CG5274-PB 373 CG5274-PB 1..373 1..373 1874 100 Plus