Clone SD10928 Report

Search the DGRC for SD10928

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:109
Well:28
Vector:pOT2
Associated Gene/TranscriptPHGPx-RA
Protein status:SD10928.pep: gold
Preliminary Size:2347
Sequenced Size:2239

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12013 2001-10-10 Blastp of sequenced clone
CG12013 2003-01-01 Sim4 clustering to Release 3
PHGPx 2008-04-29 Release 5.5 accounting
PHGPx 2008-08-15 Release 5.9 accounting
PHGPx 2008-12-18 5.12 accounting

Clone Sequence Records

SD10928.complete Sequence

2239 bp (2239 high quality bases) assembled on 2001-10-10

GenBank Submission: AY061632

> SD10928.complete
AGAGTGCCCAGTGCCATTAGTCATTGCTATTACGCCATAAGTAAGCCCAA
ACAATAATACCCAGCTGTCGAGATTAAGCACAGCATAATCAGCCCAAAAA
CACAGCTGGTCGAGGTGACAAGAATATATGTATATAGAGCAGGGAAAACA
GTCGAATCGAATCTGAACTTTGCTCCCGATTTTCGCCCATATCAGCGTGA
GCTTGCAGAATCTCGGCATTCGCATTCTATATTTGTATCCCTGCATCCGA
AACTCGCAGCAGATCGTTGTGAAATCGTACACATAGTCGATATATAGCGC
AGTAATGGCTGGCCGCTCCATCGTCCACTTTTTTCTGGGGTCCGTGGCAA
TCGCCCTGGGATCGTACATCTACTTCACCATGCAAGTAATTACCCATAAC
ACTAACTATCCCTTCAAATTGCTGTCCAATCAACTCGAACAATGGCTTGC
ATGTGCAATGAGCGACGGTAACGAGGCAGCGTCGTGGGTAACGTGGGCCA
ATCCTGGCCAGCTTAAAGGTCACTGTGCGTAGCCACTAGGTTGCGTGACT
CACAGGGTGCTGGGATATACATATACGGAGTTATGTACATATAGCTCTCG
ACTTTGAACCCGATGAATTATGCAGCGTCACTGTAACCAGAAGCCTGATA
TCACCCTCGTAAATGTCTATGAAACAACATACAACTATTAGGAAACCCAT
TATCAAAACGTGAAATAATCTTGGATGTTTGTCGTCGGGTTGTCGAATAC
AATCTATACACCACATACATTTGCACACTTTCTTATTCGGAAATAAGATA
GCTTTGAGCTATCTTACTACTTTACTTACTACTTGCTCTTATCTACTTAA
CTATTTCGTTAATCAGTAGAAATGTGGATTTGATTTTTATATTTTCCCAT
TGAATTGTTTTGAAACGATTGTTGTTCGATCTGATACACAACGTACACAT
CCACACCAGTAATTCCTTGACTTGCCTAAGCTTTCACTAAATTTGAACAT
TCTGCCCGGTTATTATTTGCAGCATTTAAAGAATGAGTCTCAGGCAGTTT
CAGAACATTTCCCGCCAGGCCCTCAGGTGCTACTCGATGAGGCGGACTCT
GGGCCCCGTCCTCGAGCTGAGTCGCGGTCAGAGGCAGTGCCTTCGCCTCT
GCACCGTCATGCTTCCCGTGAGCTGTGCGGCCACGCCCATGAACGCCATC
TCCTCAGCCGCCCAGCACTCCACAGCAGCTGCCGTGAGTAGTGCTGATTG
CTAGTTGACTAGATCCTAACCCGTTGACTAACTCAGTTGCTGCGCCTTAC
TAAACGTTGTAGCGTTTGCCACTGCCTGTGTTCTCTGTTCTCCGTTGCCT
GTTCACTGCAATGAACCGCCTAGACTGGGTCGATTTTGATACAGAATATA
GTGTTTCATACCCCGATTGAAGATAAGGCTATATCTATATCTCTTGATCA
AAACATCGACCCAAGCCTTCACAGCCACTAGTAATTATCCAATTGTAACT
CCCACTTTCTATTGCTTCCAGATCGACATGTCTGCTAACGGAGATTACAA
GAACGCCGCCTCGATCTACGAGTTCACCGTGAAGGATACCCATGGCAACG
ATGTTTCCCTGGAAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACATC
GCCTCCAAGTGCGGCCTGACCAAGAACAACTACGAGAAGCTGACGGATCT
AAAGGAGAAGTACGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGCA
ATCAGTTTGGGTCCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTGC
CACCTGCGCGACTCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCGA
TGTGAATGGAGACAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAGC
AGACCGGCACCCTGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCTG
GTGAACAAGGAGGGCGTGCCCATCAACCGATATGCCCCGACCACCGATCC
CATGGACATCGCCAAGGACATTGAAAAGCTGCTGTAGATGTGCCCTAGAC
GTTAGCTGCTCTTTTGGACTGTGTTTTCGCGTAGCTTTAGCTTGTAACCG
TCTGGCCACAGATAGTCTTGTGGCCGGCCACATGCACCGCATGGTATATA
TATTGTCTACTCCTTACTGGTTTTGATTCCCACCCGCAAACATAATAAAC
GCCATTCGTGGTTACCACACTAAAAAAAAAAAAAAAAAA

SD10928.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-RC 1212 PHGPx-RC 464..1164 1522..2222 3505 100 Plus
PHGPx-RD 1078 PHGPx-RD 330..1030 1522..2222 3505 100 Plus
PHGPx-RA 867 PHGPx-RA 119..819 1522..2222 3505 100 Plus
PHGPx-RC 1212 PHGPx-RC 81..463 3..385 1885 99.4 Plus
PHGPx-RD 1078 PHGPx-RD 119..329 1023..1233 995 98.1 Plus
PHGPx-RD 1078 PHGPx-RD 81..118 3..40 175 97.3 Plus
PHGPx-RA 867 PHGPx-RA 81..118 3..40 175 97.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3325739..3327592 3..1847 8835 98.8 Plus
chr3L 24539361 chr3L 3327656..3328033 1844..2221 1875 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:54:27 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3326330..3328185 3..1847 8395 97.3 Plus
3L 28110227 3L 3328249..3328627 1844..2222 1895 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3326901..3327611 582..1291 3365 98.4 Plus
3L 28103327 3L 3326330..3326902 3..575 2775 98.9 Plus
3L 28103327 3L 3327663..3328185 1329..1847 2455 98.2 Plus
3L 28103327 3L 3328249..3328627 1844..2222 1895 100 Plus
3L 28103327 3L 3327617..3327767 1290..1433 550 92 Plus
Blast to na_te.dros performed on 2019-03-16 15:10:10 has no hits.

SD10928.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:10:57 Download gff for SD10928.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3325737..3327590 1..1845 97 -> Plus
chr3L 3327658..3328033 1846..2221 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2008-12-08 21:06:52 has no hits.
Sim4 to dmel-all-CDS-r5.32.fasta performed on 2011-03-16 19:38:02 has no hits.
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-04 16:05:31 has no hits.
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 20:06:58 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 11:37:18 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed on 2008-11-10 23:18:59 has no hits.
Sim4 to dmel-all-transcript-r5.32.fasta performed on 2011-03-16 19:38:01 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-04 16:05:31 has no hits.
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:06:58 Download gff for SD10928.complete
Subject Subject Range Query Range Percent Splice Strand
PHGPx-RB 38..2269 1..2221 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 11:37:18 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:10:57 Download gff for SD10928.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3326328..3328183 1..1845 97 -> Plus
3L 3328251..3328626 1846..2221 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:10:57 Download gff for SD10928.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3326328..3328183 1..1845 97 -> Plus
3L 3328251..3328626 1846..2221 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:10:57 Download gff for SD10928.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3326328..3328183 1..1845 97 -> Plus
3L 3328251..3328626 1846..2221 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:31 Download gff for SD10928.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3326328..3328183 1..1845 97 -> Plus
arm_3L 3328251..3328626 1846..2221 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:42:59 Download gff for SD10928.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3326328..3328183 1..1845 97 -> Plus
3L 3328251..3328626 1846..2221 100   Plus

SD10928.pep Sequence

Translation from 1527 to 2036

> SD10928.pep
MSANGDYKNAASIYEFTVKDTHGNDVSLEKYKGKVVLVVNIASKCGLTKN
NYEKLTDLKEKYGERGLVILNFPCNQFGSQMPEADGEAMVCHLRDSKADI
GEVFAKVDVNGDNAAPLYKYLKAKQTGTLGSGIKWNFTKFLVNKEGVPIN
RYAPTTDPMDIAKDIEKLL*

SD10928.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10532-PA 240 GF10532-PA 74..240 3..169 872 95.2 Plus
Dana\GF13732-PA 195 GF13732-PA 40..191 13..169 451 53.5 Plus
Dana\GF20161-PA 187 GF20161-PA 5..103 32..169 367 58 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15132-PA 265 GG15132-PA 97..265 1..169 902 98.2 Plus
Dere\GG20925-PA 193 GG20925-PA 33..191 6..169 432 51.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15953-PA 245 GH15953-PA 79..245 3..169 872 95.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:10
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-PA 169 CG12013-PA 1..169 1..169 887 100 Plus
PHGPx-PC 198 CG12013-PC 30..198 1..169 887 100 Plus
PHGPx-PD 238 CG12013-PD 70..238 1..169 887 100 Plus
CG15116-PA 193 CG15116-PA 33..191 6..169 403 50.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16605-PA 213 GI16605-PA 47..213 3..169 857 93.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:40:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16141-PA 238 GL16141-PA 70..238 1..169 853 89.9 Plus
Dper\GL10571-PA 201 GL10571-PA 37..196 10..169 460 53.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11336-PA 238 GA11336-PA 70..238 1..169 853 89.9 Plus
Dpse\GA13504-PA 201 GA13504-PA 37..196 10..169 463 53.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14565-PA 253 GM14565-PA 85..253 1..169 900 98.8 Plus
Dsec\GM19853-PA 193 GM19853-PA 33..191 6..169 423 50 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13757-PA 196 GD13757-PA 85..190 1..106 565 98.1 Plus
Dsim\GD25340-PA 193 GD25340-PA 33..191 6..169 425 50.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12858-PA 244 GJ12858-PA 78..244 3..169 863 94.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20508-PA 254 GK20508-PA 86..254 1..169 846 90.5 Plus
Dwil\GK19311-PA 194 GK19311-PA 39..190 12..169 431 51.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21358-PA 265 GE21358-PA 97..265 1..169 899 97.6 Plus
Dyak\GE13862-PA 193 GE13862-PA 39..191 12..169 435 52.5 Plus

SD10928.hyp Sequence

Translation from 1527 to 2036

> SD10928.hyp
MSANGDYKNAASIYEFTVKDTHGNDVSLEKYKGKVVLVVNIASKCGLTKN
NYEKLTDLKEKYGERGLVILNFPCNQFGSQMPEADGEAMVCHLRDSKADI
GEVFAKVDVNGDNAAPLYKYLKAKQTGTLGSGIKWNFTKFLVNKEGVPIN
RYAPTTDPMDIAKDIEKLL*

SD10928.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
PHGPx-PA 169 CG12013-PA 1..169 1..169 887 100 Plus
PHGPx-PC 198 CG12013-PC 30..198 1..169 887 100 Plus
PHGPx-PD 238 CG12013-PD 70..238 1..169 887 100 Plus
CG15116-PA 193 CG15116-PA 33..191 6..169 403 50.6 Plus