Clone SD11068 Report

Search the DGRC for SD11068

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:110
Well:68
Vector:pOT2
Associated Gene/Transcriptras-RA
Protein status:SD11068.pep: gold
Sequenced Size:2431

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
ras-RA 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

SD11068.complete Sequence

2431 bp assembled on 2011-01-31

GenBank Submission: BT125958.1

> SD11068.complete
CGAACTCGATTCGCGCAGCACACGCGGCACTTGGACTCCAGCGGACTCCT
CGAGAGGAATCTGTATCCACAAAAAGAAATCTGCAACAGGAGAAGATCCC
AAAACAGGCGGTTTTTATCTCTATACGGCTTGTTATTGTCAGCTCCCCGT
TGTTTGTTGACTGTTTGTTTGGGTTGAACGCACGCGGAAAATGGAGAGCA
CGACAAAGGTGAAGGTGAACGGCTTTGTGGAATCGACGTCGTCTTCAGCG
GCGCCGGCAATCCAGACAAAGAGTACCACCGGATTCGATGCCGAGCTGCA
GGATGGGCTGAGTTGTAAGGAACTGTTCCAGAACGGTGAGGGACTCACCT
ACAACGACTTTCTCATACTGCCCGGCTACATAGACTTCACCGCCGAGGAG
GTCGATCTCAGTTCGCCACTGACCAAGTCGCTGACATTGCGAGCACCGCT
GGTTAGTTCGCCCATGGACACGGTAACCGAATCGGAGATGGCCATCGCCA
TGGCGCTGTGTGGTGGCATTGGCATCATCCATCACAACTGCACGCCGGAA
TACCAGGCGTTGGAGGTGCACAAGGTTAAGAAGTACAAGCACGGCTTCAT
GCGCGACCCCTCGGTGATGTCGCCCACGAATACGGTGGGGGATGTGTTGG
AGGCGCGGCGGAAGAACGGATTCACCGGCTATCCGGTCACCGAGAACGGC
AAACTTGGCGGCAAGCTGCTGGGCATGGTCACGTCGCGAGACATTGACTT
CCGCGAGAACCAGCCGGAGGTCCTGCTGGCCGACATCATGACCACCGAAC
TGGTCACCGCTCCCAATGGCATCAATCTGCCCACGGCAAACGCTATTCTC
GAGAAGAGCAAGAAGGGCAAACTGCCGATTGTGAATCAGGCCGGCGAACT
GGTGGCCATGATTGCCCGCACGGATTTGAAGAAGGCCCGCTCCTACCCGA
ATGCCTCCAAGGACTCCAATAAGCAGCTCCTCGTCGGCGCTGCCATCGGA
ACGCGATCGGAGGACAAGGCGCGCCTGGCTCTGCTGGTGGCCAACGGCGT
GGACGTTATCATCCTTGATTCATCGCAGGGCAACTCCGTCTACCAGGTGG
AGATGATCAAGTACATTAAGGAGACCTATCCCGAACTACAGGTCATTGGT
GGCAATGTGGTAACACGTGCCCAGGCCAAAAATCTCATTGATGCCGGCGT
CGATGGACTGCGTGTGGGCATGGGTTCCGGTTCCATCTGCATCACCCAGG
AGGTGATGGCCTGCGGATGTCCTCAGGCCACTGCTGTCTACCAGGTGTCC
ACGTACGCTCGCCAATTCGGAGTGCCAGTGATCGCGGACGGAGGCATCCA
GTCCATTGGACACATTGTGAAGGCTATTGCATTGGGAGCCAGCGCTGTAA
TGATGGGCTCCCTGCTGGCGGGCACATCGGAGGCACCGGGCGAGTACTTC
TTCTCCGACGGAGTGCGCCTTAAGAAGTACCGCGGCATGGGCTCCCTGGA
GGCCATGGAGCGCGGCGATGCCAAGGGCGCTGCCATGTCGCGCTACTACC
ACAACGAGATGGATAAAATGAAGGTGGCACAGGGCGTCAGTGGCAGCATC
GTGGACAAGGGCAGTGTGCTGCGCTATCTACCCTATTTGGAGTGCGGACT
GCAGCACAGTTGTCAGGACATCGGTGCTAACTCCATTAATAAATTGAGGG
ATATGATCTATAATGGCCAACTGCGCTTCATGAAGCGCACCCATTCCGCT
CAACTGGAAGGCAATGTCCATGGCCTCTTCAGCTACGAGAAGCGTCTCTT
CTAACATACGACGATGGCTGCGACGGAAACGGGCAGTGGAGGAGTGCCTG
CCCCTGTCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACACCATCAGCAG
CAACAGCATCGCCACCGATCTGCAGCAGGCCCACTGCTCGACTACACCCG
CCTATTCGATCGCAAGTGAGAGAAGAAAAGAGAATCGAGCGCTCGAATAG
CGCATCCTTTTCCCCTGGATTTTTTCCAATGTTAGGTTAAGTTTAATCGG
AATCGCTGACGTTAAAGATTACGATTCCAATGTAGATTCCCCTTTTTGAT
GGCGGTGGAGGTTACCTCGAATCGCCCGAATACATGTGTATACTTAATCC
ATCTGTCTGGTAGACAGAATCCTAATTATAAGTGTTTGCAGGTTACTTGA
TCTGTATAGAAAGTATATAATCTTCAACTATTCGCTATATATATCTAAAG
CGCAACGCGTTGGTTGGCCGCTTACTTATTTTGCACGCTATATGTATATA
GATGTTAATCTCTATTTGTATAGTGTTGGATGTTTACTATTATACCGAAG
CTAGCTTCAAGTTTTAAAACTCTGCCAAACTTATTAAATGTGAACTGAAA
CTAACTGAAAAGTAAAAAAAAAAAAAAAAAA

SD11068.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 10639463..10640179 1697..2413 3555 99.7 Plus
chrX 22417052 chrX 10637787..10638439 505..1157 3265 100 Plus
chrX 22417052 chrX 10638852..10639394 1157..1699 2715 100 Plus
chrX 22417052 chrX 10637045..10637350 49..354 1530 100 Plus
chrX 22417052 chrX 10637439..10637593 351..505 760 99.4 Plus
chrX 22417052 chrX 10636809..10636855 1..47 235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10748096..10748807 1697..2414 3465 99.2 Plus
X 23542271 X 10746420..10747072 505..1157 3265 100 Plus
X 23542271 X 10747485..10748027 1157..1699 2715 100 Plus
X 23542271 X 10745678..10745983 49..354 1515 99.7 Plus
X 23542271 X 10746072..10746226 351..505 760 99.4 Plus
X 23542271 X 10745442..10745488 1..47 235 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 10756194..10756905 1697..2414 3475 99.1 Plus
X 23527363 X 10754518..10755170 505..1157 3265 100 Plus
X 23527363 X 10755583..10756125 1157..1699 2715 100 Plus
X 23527363 X 10753776..10754081 49..354 1515 99.6 Plus
X 23527363 X 10754170..10754324 351..505 760 99.3 Plus
X 23527363 X 10753540..10753586 1..47 235 100 Plus
Blast to na_te.dros performed on 2019-03-17 01:35:24 has no hits.

SD11068.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:36:24 Download gff for SD11068.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 10636809..10636856 1..48 97 -> Plus
chrX 10637045..10637350 49..354 100 -> Plus
chrX 10637443..10637593 355..505 100 -> Plus
chrX 10637788..10638439 506..1157 100 -> Plus
chrX 10638853..10639393 1158..1698 100 -> Plus
chrX 10639465..10640179 1699..2413 93   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-01-31 12:33:00 Download gff for SD11068.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RA 1..1614 191..1804 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:43:46 Download gff for SD11068.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RC 1..1614 191..1804 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:02:41 Download gff for SD11068.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RA 1..1614 191..1804 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-31 12:32:59 Download gff for SD11068.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RA 820..3226 1..2413 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:43:46 Download gff for SD11068.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RE 9..2415 1..2413 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:02:41 Download gff for SD11068.complete
Subject Subject Range Query Range Percent Splice Strand
ras-RE 9..2415 1..2413 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:36:24 Download gff for SD11068.complete
Subject Subject Range Query Range Percent Splice Strand
X 10745442..10745489 1..48 97 -> Plus
X 10745678..10745983 49..354 99 -> Plus
X 10746076..10746226 355..505 100 -> Plus
X 10746421..10747072 506..1157 100 -> Plus
X 10747486..10748026 1158..1698 100 -> Plus
X 10748098..10748806 1699..2413 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:36:24 Download gff for SD11068.complete
Subject Subject Range Query Range Percent Splice Strand
X 10745442..10745489 1..48 97 -> Plus
X 10745678..10745983 49..354 99 -> Plus
X 10746076..10746226 355..505 100 -> Plus
X 10746421..10747072 506..1157 100 -> Plus
X 10747486..10748026 1158..1698 100 -> Plus
X 10748098..10748806 1699..2413 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:36:24 Download gff for SD11068.complete
Subject Subject Range Query Range Percent Splice Strand
X 10745442..10745489 1..48 97 -> Plus
X 10745678..10745983 49..354 99 -> Plus
X 10746076..10746226 355..505 100 -> Plus
X 10746421..10747072 506..1157 100 -> Plus
X 10747486..10748026 1158..1698 100 -> Plus
X 10748098..10748806 1699..2413 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:43:46 Download gff for SD11068.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10639475..10639522 1..48 97 -> Plus
arm_X 10639711..10640016 49..354 99 -> Plus
arm_X 10640109..10640259 355..505 100 -> Plus
arm_X 10640454..10641105 506..1157 100 -> Plus
arm_X 10641519..10642059 1158..1698 100 -> Plus
arm_X 10642131..10642839 1699..2413 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:56:22 Download gff for SD11068.complete
Subject Subject Range Query Range Percent Splice Strand
X 10753776..10754081 49..354 99 -> Plus
X 10754174..10754324 355..505 100 -> Plus
X 10754519..10755170 506..1157 100 -> Plus
X 10755584..10756124 1158..1698 100 -> Plus
X 10756196..10756904 1699..2413 99   Plus
X 10753540..10753587 1..48 97 -> Plus

SD11068.pep Sequence

Translation from 190 to 1803

> SD11068.pep
MESTTKVKVNGFVESTSSSAAPAIQTKSTTGFDAELQDGLSCKELFQNGE
GLTYNDFLILPGYIDFTAEEVDLSSPLTKSLTLRAPLVSSPMDTVTESEM
AIAMALCGGIGIIHHNCTPEYQALEVHKVKKYKHGFMRDPSVMSPTNTVG
DVLEARRKNGFTGYPVTENGKLGGKLLGMVTSRDIDFRENQPEVLLADIM
TTELVTAPNGINLPTANAILEKSKKGKLPIVNQAGELVAMIARTDLKKAR
SYPNASKDSNKQLLVGAAIGTRSEDKARLALLVANGVDVIILDSSQGNSV
YQVEMIKYIKETYPELQVIGGNVVTRAQAKNLIDAGVDGLRVGMGSGSIC
ITQEVMACGCPQATAVYQVSTYARQFGVPVIADGGIQSIGHIVKAIALGA
SAVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMERGDAKGAAMS
RYYHNEMDKMKVAQGVSGSIVDKGSVLRYLPYLECGLQHSCQDIGANSIN
KLRDMIYNGQLRFMKRTHSAQLEGNVHGLFSYEKRLF*

SD11068.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21436-PA 540 GF21436-PA 20..540 8..537 2656 93.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18365-PA 535 GG18365-PA 4..535 6..537 2790 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12599-PA 543 GH12599-PA 18..543 6..537 2582 90.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
ras-PD 537 CG1799-PD 1..537 1..537 2728 100 Plus
ras-PE 537 CG1799-PE 1..537 1..537 2728 100 Plus
ras-PA 537 CG1799-PA 1..537 1..537 2728 100 Plus
ras-PC 537 CG1799-PC 1..537 1..537 2728 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15433-PA 235 GI15433-PA 1..231 92..322 1172 94.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26729-PA 513 GL26729-PA 5..513 3..537 2522 88.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14756-PA 526 GA14756-PA 5..526 3..537 2621 91.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11429-PA 536 GM11429-PA 1..536 1..537 2712 95.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16985-PA 527 GD16985-PA 1..527 1..537 2722 96.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14720-PA 556 GJ14720-PA 17..556 6..537 2584 90.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10285-PA 541 GK10285-PA 17..541 5..537 2615 92.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17853-PA 532 GE17853-PA 4..532 6..537 2769 97.9 Plus

SD11068.hyp Sequence

Translation from 190 to 1803

> SD11068.hyp
MESTTKVKVNGFVESTSSSAAPAIQTKSTTGFDAELQDGLSCKELFQNGE
GLTYNDFLILPGYIDFTAEEVDLSSPLTKSLTLRAPLVSSPMDTVTESEM
AIAMALCGGIGIIHHNCTPEYQALEVHKVKKYKHGFMRDPSVMSPTNTVG
DVLEARRKNGFTGYPVTENGKLGGKLLGMVTSRDIDFRENQPEVLLADIM
TTELVTAPNGINLPTANAILEKSKKGKLPIVNQAGELVAMIARTDLKKAR
SYPNASKDSNKQLLVGAAIGTRSEDKARLALLVANGVDVIILDSSQGNSV
YQVEMIKYIKETYPELQVIGGNVVTRAQAKNLIDAGVDGLRVGMGSGSIC
ITQEVMACGCPQATAVYQVSTYARQFGVPVIADGGIQSIGHIVKAIALGA
SAVMMGSLLAGTSEAPGEYFFSDGVRLKKYRGMGSLEAMERGDAKGAAMS
RYYHNEMDKMKVAQGVSGSIVDKGSVLRYLPYLECGLQHSCQDIGANSIN
KLRDMIYNGQLRFMKRTHSAQLEGNVHGLFSYEKRLF*

SD11068.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
ras-PD 537 CG1799-PD 1..537 1..537 2728 100 Plus
ras-PE 537 CG1799-PE 1..537 1..537 2728 100 Plus
ras-PA 537 CG1799-PA 1..537 1..537 2728 100 Plus
ras-PC 537 CG1799-PC 1..537 1..537 2728 100 Plus