BDGP Sequence Production Resources |
Search the DGRC for SD11293
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 112 |
Well: | 93 |
Vector: | pOT2 |
Associated Gene/Transcript | RfC3-RA |
Protein status: | SD11293.pep: gold |
Preliminary Size: | 1050 |
Sequenced Size: | 1136 |
Gene | Date | Evidence |
---|---|---|
CG5313 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5313 | 2002-05-18 | Blastp of sequenced clone |
CG5313 | 2003-01-01 | Sim4 clustering to Release 3 |
RfC3 | 2008-04-29 | Release 5.5 accounting |
RfC3 | 2008-08-15 | Release 5.9 accounting |
RfC3 | 2008-12-18 | 5.12 accounting |
1136 bp (1136 high quality bases) assembled on 2002-05-18
GenBank Submission: AY119188
> SD11293.complete CTTCCATGCGCATTTTATTGTATTAAATTTCTACCAATATATCAAATTAT AGTTATGTCGGAAACCAGTGGACCCGCAGTGCGCATGCCTTGGGTGGAAA AGTACAGACCAAGCGGTCTCGATGATTTGATATCTCACGAGGAAATAATA TCAACAATAACCCGCTTTATAAGCCGCAAGCAGCTGCCCCATTTGCTGTT CTACGGACCACCTGGCACGGGAAAAACGAGTACAATCCTGGCCTGCGCTC GCCAATTGTATTCCCCTCAGCAGTTCAAGTCCATGGTCCTGGAGCTGAAT GCCTCAGATGACCGAGGCATTGGGATTGTGCGCGGTCAAATCCTTAACTT CGCGTCCACACGCACCATTTTCTGCGACACCTTTAAGCTGATCATTTTGG ACGAGGCCGATGCCATGACCAACGATGCCCAGAATGCCCTGCGCCGCATA ATTGAGAAATATACGGACAACGTGCGCTTCTGTGTGATTTGCAATTATTT GAGCAAAATCATTCCGGCCCTGCAGTCGCGTTGCACCCGTTTTCGGTTCG CTCCATTATCCCAGGATCAGATGATGCCGCGACTAGAAAAAATCATCGAA GCCGAAGCTGTTCAGATAACTGAGGACGGCAAGCGGGCACTGCTGACCCT GGCCAAAGGTGATATGAGAAAGGTCTTGAACGTCCTGCAGAGTACCGTGA TGGCATTTGATACGGTCAACGAGGATAACGTCTACATGTGCGTGGGCTAT CCGTTGAGGCAGGATATTGAACAGATATTGAAGGCCTTGCTATCTGGCAG TAGCTTGGAGGACTCCTTCAAAACTGTCGAAAGTGCCAAGTACGCAAGAG GTCTCGCTCTGGAAGACATCATTACAGAATTGCATTTGTTCGTTATGAGA CTTGAGCTGCCTATGTCGGTCATGAACAAGCTTATTGTAAAGCTAGCTCA GATCGAGGAGAGATTGGCCAAAGGATGTACAGAAGTGGCTCAAACTGCAG CTCTGGTAGCCGCCTTCTTTATTTGCCGAGATATGGTTTCAATGGAGAAG TGAAACAATGTGTACTCCAATAATAGGTTAGAATTAAATTATAAATACAA AAACATAAAACACAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RfC3-RA | 1213 | RfC3-RA | 58..1172 | 1..1115 | 5440 | 99.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 10418330..10418780 | 158..608 | 2180 | 98.9 | Plus |
chr2L | 23010047 | chr2L | 10419251..10419462 | 902..1113 | 1060 | 100 | Plus |
chr2L | 23010047 | chr2L | 10418842..10419055 | 610..823 | 1040 | 99.1 | Plus |
chr2L | 23010047 | chr2L | 10418061..10418153 | 1..93 | 450 | 98.9 | Plus |
chr2L | 23010047 | chr2L | 10419118..10419195 | 824..901 | 360 | 97.4 | Plus |
chr2L | 23010047 | chr2L | 10418208..10418273 | 92..157 | 330 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10419480..10419930 | 158..608 | 2195 | 99.1 | Plus |
2L | 23513712 | 2L | 10420401..10420614 | 902..1115 | 1070 | 100 | Plus |
2L | 23513712 | 2L | 10419992..10420205 | 610..823 | 1040 | 99.1 | Plus |
2L | 23513712 | 2L | 10419211..10419303 | 1..93 | 465 | 100 | Plus |
2L | 23513712 | 2L | 10420268..10420345 | 824..901 | 360 | 97.4 | Plus |
2L | 23513712 | 2L | 10419358..10419423 | 92..157 | 330 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 10419480..10419930 | 158..608 | 2195 | 99.1 | Plus |
2L | 23513712 | 2L | 10420401..10420614 | 902..1115 | 1070 | 100 | Plus |
2L | 23513712 | 2L | 10419992..10420205 | 610..823 | 1040 | 99 | Plus |
2L | 23513712 | 2L | 10419211..10419303 | 1..93 | 465 | 100 | Plus |
2L | 23513712 | 2L | 10420268..10420345 | 824..901 | 360 | 97.4 | Plus |
2L | 23513712 | 2L | 10419358..10419423 | 92..157 | 330 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 10418061..10418152 | 1..92 | 98 | -> | Plus |
chr2L | 10418209..10418273 | 93..157 | 100 | -> | Plus |
chr2L | 10418330..10418780 | 158..608 | 98 | -> | Plus |
chr2L | 10418841..10419055 | 609..823 | 98 | -> | Plus |
chr2L | 10419118..10419195 | 824..901 | 97 | -> | Plus |
chr2L | 10419251..10419462 | 902..1113 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC3-RA | 1..999 | 55..1053 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC3-RA | 1..999 | 55..1053 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC3-RA | 1..999 | 55..1053 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC3-RA | 1..999 | 55..1053 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC3-RA | 1..999 | 55..1053 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC3-RA | 1..1113 | 1..1113 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC3-RA | 22..1134 | 1..1113 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC3-RA | 22..1134 | 1..1113 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC3-RA | 1..1113 | 1..1113 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RfC3-RA | 22..1134 | 1..1113 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10419991..10420205 | 609..823 | 98 | -> | Plus |
2L | 10420268..10420345 | 824..901 | 97 | -> | Plus |
2L | 10419480..10419930 | 158..608 | 99 | -> | Plus |
2L | 10419211..10419302 | 1..92 | 100 | -> | Plus |
2L | 10419359..10419423 | 93..157 | 100 | -> | Plus |
2L | 10420401..10420612 | 902..1113 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10419991..10420205 | 609..823 | 98 | -> | Plus |
2L | 10420268..10420345 | 824..901 | 97 | -> | Plus |
2L | 10419480..10419930 | 158..608 | 99 | -> | Plus |
2L | 10419211..10419302 | 1..92 | 100 | -> | Plus |
2L | 10419359..10419423 | 93..157 | 100 | -> | Plus |
2L | 10420401..10420612 | 902..1113 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10419991..10420205 | 609..823 | 98 | -> | Plus |
2L | 10420268..10420345 | 824..901 | 97 | -> | Plus |
2L | 10419480..10419930 | 158..608 | 99 | -> | Plus |
2L | 10419211..10419302 | 1..92 | 100 | -> | Plus |
2L | 10419359..10419423 | 93..157 | 100 | -> | Plus |
2L | 10420401..10420612 | 902..1113 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 10419991..10420205 | 609..823 | 98 | -> | Plus |
arm_2L | 10420268..10420345 | 824..901 | 97 | -> | Plus |
arm_2L | 10420401..10420612 | 902..1113 | 100 | Plus | |
arm_2L | 10419211..10419302 | 1..92 | 100 | -> | Plus |
arm_2L | 10419359..10419423 | 93..157 | 100 | -> | Plus |
arm_2L | 10419480..10419930 | 158..608 | 99 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 10419480..10419930 | 158..608 | 99 | -> | Plus |
2L | 10419991..10420205 | 609..823 | 98 | -> | Plus |
2L | 10420268..10420345 | 824..901 | 97 | -> | Plus |
2L | 10420401..10420612 | 902..1113 | 100 | Plus | |
2L | 10419211..10419302 | 1..92 | 100 | -> | Plus |
2L | 10419359..10419423 | 93..157 | 100 | -> | Plus |
Translation from 0 to 1052
> SD11293.hyp LPCAFYCIKFLPIYQIIVMSETSGPAVRMPWVEKYRPSGLDDLISHEEII STITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYSPQQFKSMVLELN ASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDAQNALRRI IEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIE AEAVQITEDGKRALLTLAKGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGY PLRQDIEQILKALLSGSSLEDSFKTVESAKYARGLALEDIITELHLFVMR LELPMSVMNKLIVKLAQIEERLAKGCTEVAQTAALVAAFFICRDMVSMEK *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RfC3-PA | 332 | CG5313-PA | 1..332 | 19..350 | 1670 | 100 | Plus |
CG8142-PA | 353 | CG8142-PA | 31..303 | 30..291 | 533 | 40.1 | Plus |
RfC4-PA | 331 | CG14999-PA | 16..329 | 29..344 | 486 | 34.4 | Plus |
RfC38-PB | 356 | CG6258-PB | 4..339 | 31..339 | 267 | 25.9 | Plus |
RfC38-PA | 356 | CG6258-PA | 4..339 | 31..339 | 267 | 25.9 | Plus |
Translation from 54 to 1052
> SD11293.pep MSETSGPAVRMPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFY GPPGTGKTSTILACARQLYSPQQFKSMVLELNASDDRGIGIVRGQILNFA STRTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCVICNYLS KIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLTLA KGDMRKVLNVLQSTVMAFDTVNEDNVYMCVGYPLRQDIEQILKALLSGSS LEDSFKTVESAKYARGLALEDIITELHLFVMRLELPMSVMNKLIVKLAQI EERLAKGCTEVAQTAALVAAFFICRDMVSMEK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF15785-PA | 332 | GF15785-PA | 1..332 | 1..332 | 1703 | 95.8 | Plus |
Dana\GF21175-PA | 352 | GF21175-PA | 31..339 | 13..313 | 535 | 37.7 | Plus |
Dana\GF23886-PA | 331 | GF23886-PA | 15..322 | 10..319 | 503 | 34.7 | Plus |
Dana\GF14225-PA | 356 | GF14225-PA | 4..236 | 13..217 | 275 | 30.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10129-PA | 332 | GG10129-PA | 1..332 | 1..332 | 1763 | 99.4 | Plus |
Dere\GG18160-PA | 353 | GG18160-PA | 22..340 | 7..313 | 553 | 38.7 | Plus |
Dere\GG14218-PA | 331 | GG14218-PA | 15..326 | 10..323 | 504 | 34.6 | Plus |
Dere\GG10322-PA | 356 | GG10322-PA | 4..236 | 13..217 | 277 | 31.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13305-PA | 332 | GH13305-PA | 1..331 | 1..331 | 1501 | 82.2 | Plus |
Dgri\GH18198-PA | 356 | GH18198-PA | 34..343 | 12..313 | 559 | 39.2 | Plus |
Dgri\GH15919-PA | 331 | GH15919-PA | 16..326 | 11..323 | 502 | 36.5 | Plus |
Dgri\GH10966-PA | 356 | GH10966-PA | 4..339 | 13..321 | 279 | 28 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RfC3-PA | 332 | CG5313-PA | 1..332 | 1..332 | 1670 | 100 | Plus |
CG8142-PA | 353 | CG8142-PA | 31..303 | 12..273 | 533 | 40.1 | Plus |
RfC4-PA | 331 | CG14999-PA | 16..329 | 11..326 | 486 | 34.4 | Plus |
RfC38-PB | 356 | CG6258-PB | 4..339 | 13..321 | 267 | 25.9 | Plus |
RfC38-PA | 356 | CG6258-PA | 4..339 | 13..321 | 267 | 25.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI18168-PA | 332 | GI18168-PA | 1..331 | 1..331 | 1512 | 83.1 | Plus |
Dmoj\GI10150-PA | 354 | GI10150-PA | 32..341 | 12..313 | 548 | 38.3 | Plus |
Dmoj\GI16571-PA | 331 | GI16571-PA | 1..322 | 1..319 | 512 | 35.9 | Plus |
Dmoj\GI18150-PA | 356 | GI18150-PA | 4..339 | 13..321 | 276 | 27.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19009-PA | 333 | GL19009-PA | 1..332 | 1..332 | 1494 | 82.5 | Plus |
Dper\GL14564-PA | 354 | GL14564-PA | 32..341 | 12..313 | 559 | 38.2 | Plus |
Dper\GL12737-PA | 331 | GL12737-PA | 15..288 | 10..285 | 482 | 36.1 | Plus |
Dper\GL18586-PA | 356 | GL18586-PA | 4..236 | 13..217 | 278 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA25212-PA | 333 | GA25212-PA | 1..332 | 1..332 | 1497 | 82.8 | Plus |
Dpse\GA20846-PA | 354 | GA20846-PA | 32..341 | 12..313 | 564 | 38.5 | Plus |
Dpse\GA13416-PA | 331 | GA13416-PA | 15..288 | 10..285 | 482 | 36.1 | Plus |
Dpse\GA19473-PA | 356 | GA19473-PA | 4..236 | 13..217 | 278 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18361-PA | 332 | GM18361-PA | 1..332 | 1..332 | 1770 | 100 | Plus |
Dsec\GM14011-PA | 331 | GM14011-PA | 15..326 | 10..323 | 504 | 34.6 | Plus |
Dsec\GM22851-PA | 326 | GM22851-PA | 20..210 | 5..185 | 489 | 49 | Plus |
Dsec\GM11127-PA | 351 | GM11127-PA | 4..236 | 13..217 | 270 | 30.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD23698-PA | 332 | GD23698-PA | 1..332 | 1..332 | 1770 | 100 | Plus |
Dsim\GD13291-PA | 331 | GD13291-PA | 15..326 | 10..323 | 504 | 34.6 | Plus |
Dsim\GD22189-PA | 227 | GD22189-PA | 4..217 | 13..198 | 259 | 31.9 | Plus |
Dsim\GD15662-PA | 208 | GD15662-PA | 1..158 | 121..273 | 244 | 33.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14606-PA | 332 | GJ14606-PA | 1..331 | 1..331 | 1516 | 83.4 | Plus |
Dvir\GJ23369-PA | 356 | GJ23369-PA | 22..343 | 4..313 | 565 | 38.4 | Plus |
Dvir\GJ12823-PA | 331 | GJ12823-PA | 16..322 | 11..319 | 508 | 36.9 | Plus |
Dvir\GJ14536-PA | 356 | GJ14536-PA | 4..339 | 13..321 | 278 | 27.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15259-PA | 331 | GK15259-PA | 4..331 | 5..332 | 1551 | 86.3 | Plus |
Dwil\GK25619-PA | 355 | GK25619-PA | 20..342 | 4..313 | 553 | 38.2 | Plus |
Dwil\GK10084-PA | 333 | GK10084-PA | 18..324 | 11..319 | 511 | 35.8 | Plus |
Dwil\GK15241-PA | 356 | GK15241-PA | 4..263 | 13..242 | 279 | 30.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18941-PA | 332 | GE18941-PA | 1..332 | 1..332 | 1755 | 98.8 | Plus |
Dyak\GE15569-PA | 353 | GE15569-PA | 31..340 | 12..313 | 551 | 38.9 | Plus |
Dyak\GE20646-PA | 331 | GE20646-PA | 15..326 | 10..323 | 505 | 34.6 | Plus |
Dyak\GE12972-PA | 356 | GE12972-PA | 4..236 | 13..217 | 271 | 30.2 | Plus |