Clone SD11336 Report

Search the DGRC for SD11336

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:113
Well:36
Vector:pOT2
Associated Gene/TranscriptFeCH-RB
Protein status:SD11336.pep: gold
Sequenced Size:1359

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2098 2002-10-31 Blastp of sequenced clone
ferrochelatase 2008-04-29 Release 5.5 accounting
ferrochelatase 2008-08-15 Release 5.9 accounting
ferrochelatase 2008-12-18 5.12 accounting

Clone Sequence Records

SD11336.complete Sequence

1359 bp (1359 high quality bases) assembled on 2002-10-31

GenBank Submission: BT001878

> SD11336.complete
TGGTCTGGCAGGAGGAGTGCGCAACCTGAGCGGCCAAAAACCGAAGACCG
CGATCCTAATGCTGAACATGGGCGGTCCGACCCACACGGACCAGGTGCAT
GACTACCTCCTGCGTATTATGACCGACCGGGACATGATCCAGCTGCCGGT
GCAGAGCCGTCTTGGTCCGTGGATCGCCCAGCGCAGGACGCCCGAGGTAC
AGAAGAAGTACAAGGAGATCGGCGGTGGTTCACCGATTCTTAAGTGGACC
GAGCTGCAGGGCCAGCTCATGTGCGAGCAGTTGGACAGAATCTCCCCGGA
GACAGCACCTCACAAGCACTACGTCGGTTTCCGCTACGTGAATCCCCTCA
CTGAGAACACGCTGGCCGAGATCGAAAAGGACAAACCAGAGCGCGTTGTA
CTCTTTTCACAATATCCACAGTACAGCTGCGCCACCTCCGGATCCAGCTT
TAACTCCATATTTACTCATTATCGGAGCAAGTGAGTTAGAAATGCACAAT
TGCAGCTATTTATTTGATCCCCTCTACCTCTTTAGTAATCTGCCCTCGGA
TATCAAATGGAGCATTATCGACAGGTGGGGCACTCATCCACTTCTAATCA
AAACGTTTGCCCAGCGAATTCGCGACGAGCTGGCCAAATTTGTGGAAACG
AAACGAAATGATGTGGTCATCCTCTTCACTGCCCACTCCCTTCCCCTTAA
GGCTGTGAACCGGGGTGACGCGTATCCCTCGGAGATTGGTGCTAGCGTAC
ACATGGTGATGCAGGAACTTGGTCAGACGAATCCCTACAGCCTGGCATGG
CAATCCAAGGTGGGCCCGCTACCCTGGCTGGCGCCCGCAACTGATGATGC
CATTAAGGGCTATGTTAAGCAAGGCCTGAAGAACTTCATCCTTGTGCCCA
TTGCCTTCGTGAACGAGCACATCGAGACGCTGCATGAGCTCGACATCGAG
TACTGCGACGAACTGGCCAAGGAGGTAGGCGTAGAGGAAATCCGTCGAGC
TGCAACCCCCAACGACCACCCGCTGTTCATCGACGCCCTGACAAACGTTG
TGGCAGACCACCTGAAGTCCCAGCAGGCAGTCAACCCCAAGTTCCTCATG
CGTTGTCCCATGTGCTCCAATCCAAAGTGCAGGGAGAGCAAAAGCTGGTA
CCGCCAGCTCTGCTCGAACTAAGCAACCAAGTCAACTTGCGGGGGTGGGT
AGCACTGCGTGACAAGCGTTTCAAGTGCTGCAGCTGGAGGAGAACATTTA
TGCATTCATTTGGGTTTCTGGGGGATTGGTTTTCACATACTGGTGTTTAT
TTCTTTCCGCTTTAATTAAAGTCTCTGTTGAACAGTATAAAAAAAAAAAA
AAAAAAAAA

SD11336.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
ferrochelatase-RB 1346 ferrochelatase-RB 3..1346 1..1344 6720 100 Plus
ferrochelatase-RA 1508 ferrochelatase-RA 632..1440 536..1344 4045 100 Plus
ferrochelatase-RC 1443 ferrochelatase-RC 955..1443 856..1344 2445 100 Plus
ferrochelatase-RC 1443 ferrochelatase-RC 96..575 1..480 2400 100 Plus
ferrochelatase-RA 1508 ferrochelatase-RA 152..631 1..480 2400 100 Plus
ferrochelatase-RC 1443 ferrochelatase-RC 576..898 536..858 1615 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:56:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 27632818..27633300 1338..856 2415 100 Minus
chr3R 27901430 chr3R 27633357..27633836 858..379 2400 100 Minus
chr3R 27901430 chr3R 27634098..27634476 379..1 1895 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:54:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31810454..31810942 1344..856 2445 100 Minus
3R 32079331 3R 31810999..31811478 858..379 2400 100 Minus
3R 32079331 3R 31811740..31812118 379..1 1895 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 31551285..31551773 1344..856 2445 100 Minus
3R 31820162 3R 31551830..31552309 858..379 2400 100 Minus
3R 31820162 3R 31552571..31552949 379..1 1895 100 Minus
Blast to na_te.dros performed on 2019-03-16 18:56:08 has no hits.

SD11336.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:57:01 Download gff for SD11336.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 27632818..27633298 858..1338 100 <- Minus
chr3R 27633358..27633836 379..857 100 <- Minus
chr3R 27634099..27634476 1..378 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:07:10 Download gff for SD11336.complete
Subject Subject Range Query Range Percent Splice Strand
ferrochelatase-RB 1..681 492..1172 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:08:23 Download gff for SD11336.complete
Subject Subject Range Query Range Percent Splice Strand
ferrochelatase-RE 39..518 1..480 100 == Plus
ferrochelatase-RE 519..1155 536..1172 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:29:11 Download gff for SD11336.complete
Subject Subject Range Query Range Percent Splice Strand
FeCH-RB 1..681 492..1172 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:58:52 Download gff for SD11336.complete
Subject Subject Range Query Range Percent Splice Strand
ferrochelatase-RB 1..681 492..1172 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:40 Download gff for SD11336.complete
Subject Subject Range Query Range Percent Splice Strand
FeCH-RB 1..681 492..1172 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:28:51 Download gff for SD11336.complete
Subject Subject Range Query Range Percent Splice Strand
ferrochelatase-RB 1..1338 1..1338 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:08:23 Download gff for SD11336.complete
Subject Subject Range Query Range Percent Splice Strand
ferrochelatase-RB 1..1338 1..1338 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:11 Download gff for SD11336.complete
Subject Subject Range Query Range Percent Splice Strand
FeCH-RB 1..1338 1..1338 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:58:53 Download gff for SD11336.complete
Subject Subject Range Query Range Percent Splice Strand
ferrochelatase-RB 1..1338 1..1338 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:40 Download gff for SD11336.complete
Subject Subject Range Query Range Percent Splice Strand
FeCH-RB 1..1338 1..1338 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:57:01 Download gff for SD11336.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31810460..31810940 858..1338 100 <- Minus
3R 31811000..31811478 379..857 100 <- Minus
3R 31811741..31812118 1..378 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:57:01 Download gff for SD11336.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31810460..31810940 858..1338 100 <- Minus
3R 31811000..31811478 379..857 100 <- Minus
3R 31811741..31812118 1..378 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:57:01 Download gff for SD11336.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31810460..31810940 858..1338 100 <- Minus
3R 31811000..31811478 379..857 100 <- Minus
3R 31811741..31812118 1..378 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:11 Download gff for SD11336.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27636182..27636662 858..1338 100 <- Minus
arm_3R 27636722..27637200 379..857 100 <- Minus
arm_3R 27637463..27637840 1..378 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:30:45 Download gff for SD11336.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31551291..31551771 858..1338 100 <- Minus
3R 31551831..31552309 379..857 100 <- Minus
3R 31552572..31552949 1..378 100   Minus

SD11336.pep Sequence

Translation from 491 to 1171

> SD11336.pep
MHNCSYLFDPLYLFSNLPSDIKWSIIDRWGTHPLLIKTFAQRIRDELAKF
VETKRNDVVILFTAHSLPLKAVNRGDAYPSEIGASVHMVMQELGQTNPYS
LAWQSKVGPLPWLAPATDDAIKGYVKQGLKNFILVPIAFVNEHIETLHEL
DIEYCDELAKEVGVEEIRRAATPNDHPLFIDALTNVVADHLKSQQAVNPK
FLMRCPMCSNPKCRESKSWYRQLCSN*

SD11336.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:13:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17503-PA 384 GF17503-PA 170..383 12..225 1081 92.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11845-PA 384 GG11845-PA 170..384 12..226 1129 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17474-PA 390 GH17474-PA 176..390 12..226 1060 88.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
FeCH-PB 226 CG2098-PB 1..226 1..226 1210 100 Plus
FeCH-PA 384 CG2098-PA 170..384 12..226 1127 98.6 Plus
FeCH-PC 281 CG2098-PC 170..280 12..122 568 97.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22800-PA 387 GI22800-PA 173..387 12..226 1052 88.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:13:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23499-PA 388 GL23499-PA 173..387 12..226 1087 92.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15238-PA 388 GA15238-PA 173..387 12..226 1087 92.1 Plus
Dpse\GA15238-PB 308 GA15238-PB 173..283 12..122 547 91.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:13:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16409-PA 384 GM16409-PA 170..384 12..226 1134 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16217-PA 384 GD16217-PA 170..384 12..226 1134 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:13:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22803-PA 387 GJ22803-PA 179..387 18..226 1043 90.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10937-PA 383 GK10937-PA 169..383 12..226 1088 92.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:13:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23292-PA 384 GE23292-PA 170..384 12..226 1134 97.7 Plus

SD11336.hyp Sequence

Translation from 491 to 1171

> SD11336.hyp
MHNCSYLFDPLYLFSNLPSDIKWSIIDRWGTHPLLIKTFAQRIRDELAKF
VETKRNDVVILFTAHSLPLKAVNRGDAYPSEIGASVHMVMQELGQTNPYS
LAWQSKVGPLPWLAPATDDAIKGYVKQGLKNFILVPIAFVNEHIETLHEL
DIEYCDELAKEVGVEEIRRAATPNDHPLFIDALTNVVADHLKSQQAVNPK
FLMRCPMCSNPKCRESKSWYRQLCSN*

SD11336.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
FeCH-PB 226 CG2098-PB 1..226 1..226 1210 100 Plus
FeCH-PA 384 CG2098-PA 170..384 12..226 1127 98.6 Plus
FeCH-PC 281 CG2098-PC 170..280 12..122 568 97.3 Plus