Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
SD11637.complete Sequence
900 bp (900 high quality bases) assembled on 2002-05-18
GenBank Submission: AY119191
> SD11637.complete
ACGATTGGGGCTTGAAATCGGAATTGCGCTGGTCAATTACGGGCGCTTGG
TTACCTTTTTTTAAAACCCAAACAAACCCAAGAAACCGGCAACAAAATGA
CGCAGATGTCCGACGAACAGTTTCGCATATTCATAGAAACCATTAAATCG
CTGGGGCCAATCAAAGAGGAACCGCCATCCAAGGGTAGCTTTAGCAACTG
CACGGTGAGATTCAGTGGCCAGCGGGATCACGATGCCGTGGACGAGTTCA
TCAATGCCGTGGAGACGTATAAAGAGGTGGAGGGCATCAGCGACAAAGAT
GCGCTAAAGGGTTTGCCGCTGCTCTTCAAGAGCATTGCCGTGGTGTGGTG
GAAGGGTGTGCGCCGGGATGCCAAGACCTGGTCGGATGCCCTGCAGCTGC
TGCGCGATCACTTCTCGCCCACTAAACCTTCCTACCAGATATACATGGAG
ATCTTCGAGACGAAGCAGTCCTACGACGAGGTGATCGACTCATTCATCTG
CAAGCAGCGAGCGCTCCTAGCCAAGTTGCCGGAGGGACGACACGACGAGG
AGACGGAGCTTGACTTCATCTACGGGCTGATGCAGCCCAAGTACCGGGAG
AGCATACCCCGACACGAGGTCAAAACCTTCCGGGAGCTACTCGATCGGGG
GCGAACTGTGGAGCGCACAAGGCACTGAAGTTAGTTAAGTTAGTAGTATA
AAATTCTAGGCCAATAAACACAGATTGCACTAAATAAATCTCTTAAGCGC
CTTTATTGGGCAGATTTTAAATAACTTAATAACTACATGTATAAACCATT
TATTTTTTCATTTATAAGCTTTAAGATATGATTCATTCAATGATAAGTAT
CAGCATATACAAATAAATAAATATACGATGATAAAAAAAAAAAAAAAAAA
SD11637.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arc2-RA | 882 | Arc2-RA | 1..882 | 1..882 | 4230 | 98.6 | Plus |
CG10102-RA | 549 | CG10102-RA | 5..58 | 54..1 | 210 | 92.5 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 10249245..10250127 | 1..882 | 4335 | 99.7 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:54:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:44:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14361944..14362826 | 1..883 | 4235 | 98.6 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:32:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 14363143..14364025 | 1..883 | 4235 | 98.6 | Plus |
Blast to na_te.dros performed 2019-03-15 20:44:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 6375..6514 | 734..878 | 109 | 56.8 | Plus |
SD11637.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:45:14 Download gff for
SD11637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 10249245..10250127 | 1..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:07:14 Download gff for
SD11637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc2-RA | 1..582 | 97..678 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:41:23 Download gff for
SD11637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc2-RA | 1..582 | 97..678 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:19:24 Download gff for
SD11637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc2-RA | 1..582 | 97..678 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:33:22 Download gff for
SD11637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc2-RA | 1..582 | 97..678 | 99 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:17 Download gff for
SD11637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc2-RA | 1..582 | 97..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:15:20 Download gff for
SD11637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc2-RA | 1..882 | 1..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:41:23 Download gff for
SD11637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc2-RA | 1..882 | 1..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:24 Download gff for
SD11637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc2-RA | 21..902 | 1..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:33:22 Download gff for
SD11637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc2-RA | 1..882 | 1..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:17 Download gff for
SD11637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arc2-RA | 21..902 | 1..882 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:45:14 Download gff for
SD11637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14361944..14362825 | 1..882 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:45:14 Download gff for
SD11637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14361944..14362825 | 1..882 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:45:14 Download gff for
SD11637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14361944..14362825 | 1..882 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:24 Download gff for
SD11637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10249449..10250330 | 1..882 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:05:47 Download gff for
SD11637.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14363143..14364024 | 1..882 | 98 | | Plus |
SD11637.pep Sequence
Translation from 96 to 677
> SD11637.pep
MTQMSDEQFRIFIETIKSLGPIKEEPPSKGSFSNCTVRFSGQRDHDAVDE
FINAVETYKEVEGISDKDALKGLPLLFKSIAVVWWKGVRRDAKTWSDALQ
LLRDHFSPTKPSYQIYMEIFETKQSYDEVIDSFICKQRALLAKLPEGRHD
EETELDFIYGLMQPKYRESIPRHEVKTFRELLDRGRTVERTRH*
SD11637.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arc2-PA | 193 | CG13941-PA | 1..193 | 1..193 | 1012 | 100 | Plus |
Arc1-PA | 254 | CG12505-PA | 4..202 | 1..189 | 568 | 53.3 | Plus |
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:33:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpse\GA12644-PA | 194 | GA12644-PA | 1..194 | 1..193 | 922 | 89.2 | Plus |
Dpse\GA11668-PA | 250 | GA11668-PA | 6..199 | 3..189 | 537 | 50 | Plus |
SD11637.hyp Sequence
Translation from 96 to 677
> SD11637.hyp
MTQMSDEQFRIFIETIKSLGPIKEEPPSKGSFSNCTVRFSGQRDHDAVDE
FINAVETYKEVEGISDKDALKGLPLLFKSIAVVWWKGVRRDAKTWSDALQ
LLRDHFSPTKPSYQIYMEIFETKQSYDEVIDSFICKQRALLAKLPEGRHD
EETELDFIYGLMQPKYRESIPRHEVKTFRELLDRGRTVERTRH*
SD11637.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arc2-PA | 193 | CG13941-PA | 1..193 | 1..193 | 1012 | 100 | Plus |
Arc1-PA | 254 | CG12505-PA | 4..202 | 1..189 | 568 | 53.3 | Plus |