Clone SD11637 Report

Search the DGRC for SD11637

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:116
Well:37
Vector:pOT2
Associated Gene/TranscriptArc2-RA
Protein status:SD11637.pep: gold
Preliminary Size:582
Sequenced Size:900

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13941 2002-01-01 Sim4 clustering to Release 2
CG13941 2002-05-18 Blastp of sequenced clone
CG13941 2003-01-01 Sim4 clustering to Release 3
Arc2 2008-04-29 Release 5.5 accounting
Arc2 2008-08-15 Release 5.9 accounting
Arc2 2008-12-18 5.12 accounting

Clone Sequence Records

SD11637.complete Sequence

900 bp (900 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119191

> SD11637.complete
ACGATTGGGGCTTGAAATCGGAATTGCGCTGGTCAATTACGGGCGCTTGG
TTACCTTTTTTTAAAACCCAAACAAACCCAAGAAACCGGCAACAAAATGA
CGCAGATGTCCGACGAACAGTTTCGCATATTCATAGAAACCATTAAATCG
CTGGGGCCAATCAAAGAGGAACCGCCATCCAAGGGTAGCTTTAGCAACTG
CACGGTGAGATTCAGTGGCCAGCGGGATCACGATGCCGTGGACGAGTTCA
TCAATGCCGTGGAGACGTATAAAGAGGTGGAGGGCATCAGCGACAAAGAT
GCGCTAAAGGGTTTGCCGCTGCTCTTCAAGAGCATTGCCGTGGTGTGGTG
GAAGGGTGTGCGCCGGGATGCCAAGACCTGGTCGGATGCCCTGCAGCTGC
TGCGCGATCACTTCTCGCCCACTAAACCTTCCTACCAGATATACATGGAG
ATCTTCGAGACGAAGCAGTCCTACGACGAGGTGATCGACTCATTCATCTG
CAAGCAGCGAGCGCTCCTAGCCAAGTTGCCGGAGGGACGACACGACGAGG
AGACGGAGCTTGACTTCATCTACGGGCTGATGCAGCCCAAGTACCGGGAG
AGCATACCCCGACACGAGGTCAAAACCTTCCGGGAGCTACTCGATCGGGG
GCGAACTGTGGAGCGCACAAGGCACTGAAGTTAGTTAAGTTAGTAGTATA
AAATTCTAGGCCAATAAACACAGATTGCACTAAATAAATCTCTTAAGCGC
CTTTATTGGGCAGATTTTAAATAACTTAATAACTACATGTATAAACCATT
TATTTTTTCATTTATAAGCTTTAAGATATGATTCATTCAATGATAAGTAT
CAGCATATACAAATAAATAAATATACGATGATAAAAAAAAAAAAAAAAAA

SD11637.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
Arc2-RA 882 Arc2-RA 1..882 1..882 4230 98.6 Plus
CG10102-RA 549 CG10102-RA 5..58 54..1 210 92.5 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10249245..10250127 1..882 4335 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:54:46 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14361944..14362826 1..883 4235 98.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:32:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14363143..14364025 1..883 4235 98.6 Plus
Blast to na_te.dros performed 2019-03-15 20:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 6375..6514 734..878 109 56.8 Plus

SD11637.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:45:14 Download gff for SD11637.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10249245..10250127 1..882 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:07:14 Download gff for SD11637.complete
Subject Subject Range Query Range Percent Splice Strand
Arc2-RA 1..582 97..678 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:41:23 Download gff for SD11637.complete
Subject Subject Range Query Range Percent Splice Strand
Arc2-RA 1..582 97..678 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:19:24 Download gff for SD11637.complete
Subject Subject Range Query Range Percent Splice Strand
Arc2-RA 1..582 97..678 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:33:22 Download gff for SD11637.complete
Subject Subject Range Query Range Percent Splice Strand
Arc2-RA 1..582 97..678 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:17 Download gff for SD11637.complete
Subject Subject Range Query Range Percent Splice Strand
Arc2-RA 1..582 97..678 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:15:20 Download gff for SD11637.complete
Subject Subject Range Query Range Percent Splice Strand
Arc2-RA 1..882 1..882 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:41:23 Download gff for SD11637.complete
Subject Subject Range Query Range Percent Splice Strand
Arc2-RA 1..882 1..882 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:24 Download gff for SD11637.complete
Subject Subject Range Query Range Percent Splice Strand
Arc2-RA 21..902 1..882 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:33:22 Download gff for SD11637.complete
Subject Subject Range Query Range Percent Splice Strand
Arc2-RA 1..882 1..882 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:17 Download gff for SD11637.complete
Subject Subject Range Query Range Percent Splice Strand
Arc2-RA 21..902 1..882 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:45:14 Download gff for SD11637.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14361944..14362825 1..882 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:45:14 Download gff for SD11637.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14361944..14362825 1..882 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:45:14 Download gff for SD11637.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14361944..14362825 1..882 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:24 Download gff for SD11637.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10249449..10250330 1..882 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:05:47 Download gff for SD11637.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14363143..14364024 1..882 98   Plus

SD11637.pep Sequence

Translation from 96 to 677

> SD11637.pep
MTQMSDEQFRIFIETIKSLGPIKEEPPSKGSFSNCTVRFSGQRDHDAVDE
FINAVETYKEVEGISDKDALKGLPLLFKSIAVVWWKGVRRDAKTWSDALQ
LLRDHFSPTKPSYQIYMEIFETKQSYDEVIDSFICKQRALLAKLPEGRHD
EETELDFIYGLMQPKYRESIPRHEVKTFRELLDRGRTVERTRH*

SD11637.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
Arc2-PA 193 CG13941-PA 1..193 1..193 1012 100 Plus
Arc1-PA 254 CG12505-PA 4..202 1..189 568 53.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12644-PA 194 GA12644-PA 1..194 1..193 922 89.2 Plus
Dpse\GA11668-PA 250 GA11668-PA 6..199 3..189 537 50 Plus

SD11637.hyp Sequence

Translation from 96 to 677

> SD11637.hyp
MTQMSDEQFRIFIETIKSLGPIKEEPPSKGSFSNCTVRFSGQRDHDAVDE
FINAVETYKEVEGISDKDALKGLPLLFKSIAVVWWKGVRRDAKTWSDALQ
LLRDHFSPTKPSYQIYMEIFETKQSYDEVIDSFICKQRALLAKLPEGRHD
EETELDFIYGLMQPKYRESIPRHEVKTFRELLDRGRTVERTRH*

SD11637.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Arc2-PA 193 CG13941-PA 1..193 1..193 1012 100 Plus
Arc1-PA 254 CG12505-PA 4..202 1..189 568 53.3 Plus