Clone SD11903 Report

Search the DGRC for SD11903

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:119
Well:3
Vector:pOT2
Associated Gene/Transcriptescl-RA
Protein status:SD11903.pep: gold
Sequenced Size:1812

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5202 2003-01-01 Sim4 clustering to Release 3
CG5202 2004-10-25 Blastp of sequenced clone
escl 2008-04-29 Release 5.5 accounting
escl 2008-08-15 Release 5.9 accounting
escl 2008-12-18 5.12 accounting

Clone Sequence Records

SD11903.complete Sequence

1812 bp (1812 high quality bases) assembled on 2004-10-25

GenBank Submission: BT015954

> SD11903.complete
AAGCTTTTAAGTTTGCCGGAATAAAACAGATATGACCGAAACGAATCCCA
GTGAAATATCTCCTCCGAGCGAAGAGCCACCGGCAGAGGACGAATCCACT
GACCACTCTCCAGCGGAGGCAGTGCTGAGCAATAATTCCTCGAGTGTCTG
CAATGTTGTGGAGCCGGATGATGAGCACGAAGTTAATTCCGTGGATCGGG
AGGACACCGCCAGTTTGTTCAGCACTACTACGACCACCACCAGAAGCAAA
TCGCCAAATACACGAAAATTGAACCGCCTGTGTCGGCGGATCAAGGCACC
CAAAATGGTTCAGCCCTTGTACAAATATAGCTCCCATGTCCGCGAGGACC
ACAACCATCAGATCTTCGGAGTGCAGTTCAATCCGTTCCTGGACAGAGGC
CAGCCGCAGGTGTTCGCCACCGTTGGCAAGGATCGGGTTTCCATTTATGA
GTGCGAGAGGAGCACCGGACAGGAGTCCTGCGAAGGCATTCGACTGCTGC
AAGTCTACGCAGACCCAGATACCGATGAAAGTTTCTACACATGCGCTTGG
TCCTACGACTCTGTGACCGGCGATCCTGTGCTTGCCGCGGCTGGTTACCG
CGGCGTCATTCGCATATTCAATCCGGTTAAGCACCAGTGCAGCAAAAACT
ACATTGGTCACGGGCACGCCATTAACGAGCTGAAGTTTCATCCGACTAGA
CCGCAGTTACTTCTGTCCGGCAGCAAGGATCACTCCCTGCGCCTTTGGAA
CATTCAGTCGGACGTGTGTGTGGCGGTTTTCGGCGGCGTAGAAGGACACC
GCGACGAAGTGTTGTCTGTGGACTTTGATTTGCGCGGTGATCGCATCATG
TCCAGTGGAATGGATCACTCACTGAAGCTCTGGCGACTGGATAAGCCCGA
TATAAAAGAGGCCATCGAGCTGAGCTCTGGTTTTAGTCCCAACAAGAATA
CGGGTCCGTTTCCCACGATCAAGGAGCACTTTCCGGACTTCTCGACAAGG
GATATACATCGAAATTATGTGGATTGCGTTCAGTGGTTCGGCGACTTTGT
CTTTTCGAAATCCTGCGAGAACTCAATTGTTTGCTGGAAGCCGGGCAAAC
TTTCAGAATCGTGGCATGAGATTAAGCCACAGGAGTCGGCCACCACGGTG
CTGCATCACTTTGACTACAAGATGTGCGAGATCTGGTTCGTACGCTTCGC
CTTCAACGCCTGGCAAAAGATTCTGGCCTTGGGCAATCAACTGGGCACAA
CATTTGTCTGGGAATTGGACTGCAATGATCCCAATTTAACAAAGTGTAGC
CAGCTGGTTCATCCCAAAAGCAACTCCACCATCCGACAGACTTCCTTCTC
CAAAGACGGTTCCATTTTAGTTTGCGTGTGCGACGACAGCACCGTGTGGC
GATGGGATCGCGTCAATTAGGATGAGTGTTTCTAGGCTAAAAGAATTTTC
CTTATCCTTCTAAATCCGATACCATATTTATGTAACCATAGTTATTTTCA
GTGTAATGTTTACCTTCAATATTAAGTATGTTATTATGCGTAGCATTTAT
ATACAATACTCATTGTATTGACAATTTATGTTAAATTATGTTAAATTTTT
TAACATTAACCAAGATATTTATTCTATTCTATTACTTTTTTAATGATCAA
ATAGCTTCGCAAATATTATCATCTTATGTTGTGTGAATGGCGTGGGCTCT
ATCTTTAATGTTTATATTTTAACTAACTAACTTGTACACAATAAAAACTG
TGAACACTAAAGATTAAAACCAATATTTTTTTAAAGGGTTCTTCAAAAAA
AAAAAAAAAAAA

SD11903.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
escl-RA 1923 escl-RA 130..1923 1..1794 8970 100 Plus
escl-RB 1978 escl-RB 705..1978 521..1794 6370 100 Plus
escl-RB 1978 escl-RB 130..649 1..520 2600 100 Plus
CG31864-RA 753 CG31864-RA 351..753 1181..1583 2000 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 00:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11990228..11991501 521..1794 6370 100 Plus
chr2L 23010047 chr2L 11994808..11995421 1181..1794 3055 99.8 Plus
chr2L 23010047 chr2L 11989595..11989924 1..330 1650 100 Plus
chr2L 23010047 chr2L 11989981..11990172 329..520 960 100 Plus
chr2L 23010047 chr2L 11826458..11826906 1095..647 325 71.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:54:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 00:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11991575..11992853 521..1799 6395 100 Plus
2L 23513712 2L 11996146..11996764 1181..1799 3080 99.8 Plus
2L 23513712 2L 11990942..11991271 1..330 1650 100 Plus
2L 23513712 2L 11991328..11991519 329..520 960 100 Plus
2L 23513712 2L 11827797..11828245 1095..647 310 71.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11991575..11992853 521..1799 6395 100 Plus
2L 23513712 2L 11996146..11996764 1181..1799 3080 99.8 Plus
2L 23513712 2L 11990942..11991271 1..330 1650 100 Plus
2L 23513712 2L 11991328..11991519 329..520 960 100 Plus
2L 23513712 2L 11827992..11828110 900..782 220 78.9 Minus
2L 23513712 2L 11827797..11827917 1095..975 215 78.5 Minus
2L 23513712 2L 11828198..11828245 694..647 165 89.5 Minus
2L 23513712 2L 11827645..11827718 1247..1174 145 79.7 Minus
Blast to na_te.dros performed 2019-03-16 00:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
Tc3 1743 Tc3 TC3 1743bp 231..565 1439..1779 132 52.6 Plus

SD11903.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 00:36:46 Download gff for SD11903.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11989595..11989924 1..330 100 -> Plus
chr2L 11989983..11990172 331..520 100 -> Plus
chr2L 11990228..11991501 521..1794 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:07:18 Download gff for SD11903.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 1..1389 32..1420 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:28:56 Download gff for SD11903.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 1..1389 32..1420 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:54:25 Download gff for SD11903.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 1..1389 32..1420 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:12:53 Download gff for SD11903.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 1..1389 32..1420 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:06:14 Download gff for SD11903.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 1..1389 32..1420 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:32:37 Download gff for SD11903.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 16..1780 1..1765 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:28:55 Download gff for SD11903.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 16..1809 1..1794 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:54:25 Download gff for SD11903.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 16..1809 1..1794 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:12:53 Download gff for SD11903.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 16..1780 1..1765 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:06:14 Download gff for SD11903.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 16..1809 1..1794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:36:46 Download gff for SD11903.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11990942..11991271 1..330 100 -> Plus
2L 11991330..11991519 331..520 100 -> Plus
2L 11991575..11992848 521..1794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:36:46 Download gff for SD11903.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11990942..11991271 1..330 100 -> Plus
2L 11991330..11991519 331..520 100 -> Plus
2L 11991575..11992848 521..1794 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 00:36:46 Download gff for SD11903.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11990942..11991271 1..330 100 -> Plus
2L 11991330..11991519 331..520 100 -> Plus
2L 11991575..11992848 521..1794 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:54:25 Download gff for SD11903.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11990942..11991271 1..330 100 -> Plus
arm_2L 11991330..11991519 331..520 100 -> Plus
arm_2L 11991575..11992848 521..1794 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:49:31 Download gff for SD11903.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11991330..11991519 331..520 100 -> Plus
2L 11990942..11991271 1..330 100 -> Plus
2L 11991575..11992848 521..1794 100   Plus

SD11903.pep Sequence

Translation from 31 to 1419

> SD11903.pep
MTETNPSEISPPSEEPPAEDESTDHSPAEAVLSNNSSSVCNVVEPDDEHE
VNSVDREDTASLFSTTTTTTRSKSPNTRKLNRLCRRIKAPKMVQPLYKYS
SHVREDHNHQIFGVQFNPFLDRGQPQVFATVGKDRVSIYECERSTGQESC
EGIRLLQVYADPDTDESFYTCAWSYDSVTGDPVLAAAGYRGVIRIFNPVK
HQCSKNYIGHGHAINELKFHPTRPQLLLSGSKDHSLRLWNIQSDVCVAVF
GGVEGHRDEVLSVDFDLRGDRIMSSGMDHSLKLWRLDKPDIKEAIELSSG
FSPNKNTGPFPTIKEHFPDFSTRDIHRNYVDCVQWFGDFVFSKSCENSIV
CWKPGKLSESWHEIKPQESATTVLHHFDYKMCEIWFVRFAFNAWQKILAL
GNQLGTTFVWELDCNDPNLTKCSQLVHPKSNSTIRQTSFSKDGSILVCVC
DDSTVWRWDRVN*

SD11903.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15137-PA 466 GF15137-PA 1..466 1..462 2082 85.4 Plus
Dana\GF23390-PA 425 GF23390-PA 6..419 42..460 1313 57.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23752-PA 463 GG23752-PA 1..463 1..462 2403 96.5 Plus
Dere\GG10294-PA 688 GG10294-PA 312..682 85..460 1313 61 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13063-PA 462 GH13063-PA 38..462 52..462 1913 84.8 Plus
Dgri\GH13070-PA 425 GH13070-PA 26..419 63..460 1353 60.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:37
Subject Length Description Subject Range Query Range Score Percent Strand
escl-PC 462 CG5202-PC 1..462 1..462 2513 100 Plus
escl-PA 462 CG5202-PA 1..462 1..462 2513 100 Plus
esc-PA 425 CG14941-PA 2..419 35..460 1356 58.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17683-PA 457 GI17683-PA 1..457 1..462 1872 78.2 Plus
Dmoj\GI17689-PA 426 GI17689-PA 27..420 63..460 1335 60.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18539-PA 463 GL18539-PA 2..463 4..462 2104 84 Plus
Dper\GL15273-PA 449 GL15273-PA 6..400 43..442 1247 56.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18733-PA 463 GA18733-PA 2..463 4..462 2109 84.2 Plus
Dpse\GA13369-PA 424 GA13369-PA 6..418 43..460 1331 57.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26690-PA 462 GM26690-PA 1..462 1..462 2455 98.1 Plus
Dsec\GM26550-PA 425 GM26550-PA 2..419 35..460 1365 58.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23804-PA 462 GD23804-PA 1..462 1..462 2462 98.5 Plus
Dsim\GD22153-PA 425 GD22153-PA 62..419 97..460 1313 63.5 Plus
Dsim\GD13377-PA 169 GD13377-PA 1..163 1..163 844 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:34:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17469-PA 454 GJ17469-PA 38..454 54..462 1865 84.7 Plus
Dvir\esc-PA 425 GJ17475-PA 2..419 35..460 1348 58.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15174-PA 455 GK15174-PA 1..455 1..462 1931 79.2 Plus
Dwil\GK14970-PA 418 GK14970-PA 32..412 74..460 1324 60.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:34:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18559-PA 462 GE18559-PA 1..462 1..462 2446 97.8 Plus
Dyak\GE12654-PA 675 GE12654-PA 299..669 85..460 1311 61 Plus

SD11903.hyp Sequence

Translation from 31 to 1419

> SD11903.hyp
MTETNPSEISPPSEEPPAEDESTDHSPAEAVLSNNSSSVCNVVEPDDEHE
VNSVDREDTASLFSTTTTTTRSKSPNTRKLNRLCRRIKAPKMVQPLYKYS
SHVREDHNHQIFGVQFNPFLDRGQPQVFATVGKDRVSIYECERSTGQESC
EGIRLLQVYADPDTDESFYTCAWSYDSVTGDPVLAAAGYRGVIRIFNPVK
HQCSKNYIGHGHAINELKFHPTRPQLLLSGSKDHSLRLWNIQSDVCVAVF
GGVEGHRDEVLSVDFDLRGDRIMSSGMDHSLKLWRLDKPDIKEAIELSSG
FSPNKNTGPFPTIKEHFPDFSTRDIHRNYVDCVQWFGDFVFSKSCENSIV
CWKPGKLSESWHEIKPQESATTVLHHFDYKMCEIWFVRFAFNAWQKILAL
GNQLGTTFVWELDCNDPNLTKCSQLVHPKSNSTIRQTSFSKDGSILVCVC
DDSTVWRWDRVN*

SD11903.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
escl-PC 462 CG5202-PC 1..462 1..462 2513 100 Plus
escl-PA 462 CG5202-PA 1..462 1..462 2513 100 Plus
esc-PA 425 CG14941-PA 2..419 35..460 1356 58.4 Plus