Clone SD11922 Report

Search the DGRC for SD11922

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:119
Well:22
Vector:pOT2
Associated Gene/TranscriptSpn55B-RA
Protein status:SD11922.pep: gold
Preliminary Size:1287
Sequenced Size:1357

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10913 2002-01-01 Sim4 clustering to Release 2
CG10913 2002-05-18 Blastp of sequenced clone
CG10913 2003-01-01 Sim4 clustering to Release 3
Spn6 2008-04-29 Release 5.5 accounting
Spn6 2008-08-15 Release 5.9 accounting
Spn6 2008-12-18 5.12 accounting

Clone Sequence Records

SD11922.complete Sequence

1357 bp (1357 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119193

> SD11922.complete
GCCGATGTTTTCACTTTTGTTGTGGCCCCGAATGGCATTTAAGGCATTCC
GGTGTAGACAGCAGACCAGAGAGCAAGCACACGCAGTTCCGCGATTACGC
AGCACACCCACAATTACTCAGTTCAGTCCGTCAATATGTTCGATTTCAAT
TTGGAATTTGCGCGTGGAGGTGCCCGTTTCACCAGCGAACTTTTTCAGCT
TTTGAGCGCTGGCGGGCTCAAGGAGAACGTCGTCTTCTCGCCCTTCTCCA
TCCAAACTTGCATTGCCCTGGCCTTTGCCGGATCGCAGGGTGAAACCGCC
GACGAGATCGCCAAGGCACTGCACTTCGTCTCCAACTTTCCGCCGGAGGT
GGCCCAAACGTTCCAGTTTGTGCTGGAGAAGTACCGCAACAGTAACCTGC
TGCGCGTTGCCAACAAGCTGTACGTGCAGGAGGGCAAGCAGCTGAAGCCC
GCCTACCAGTCGGCCATCAAGGAGCAGTATCATTCGGAGGCGGAGTCCAT
TAACTTTGCGCTCAACGATGCCGCCGCCCAGGCCATCAATGCCTGGGTGA
ATGCCAAGACTCAGGGCAAGATTACGGAGCTGGTCAGCGCGGACTCGTTC
TCGGACAACACCAGGCTGGTCCTGCTCAATGCCCTCCACTTCAAGGGCAG
CTGGGCGCACAAGTTCAGCGAGGAGCGCACCGAGGAGGATATCTTCTGGG
TGGGCGAGGAGGAGCAAGTTAAAATCAACTACATGAACCAGAAGGCCAAG
TTCAACTATGGCTTCTTCGAAGATCTGGGCTGCACTGCCCTGGAGATGCC
CTACCAGGACTCTGACCTCTCCATGTTCGTGCTGCTGCCGCAGGAGCGGA
CAGGTATTTACGCCCTAGCCGAGAAGCTCAAGACTGTGAACCTGGTGGAT
TTGGCCGACAAGTTGACCGTGGAAGAGGTCCATGTCAAGTTCCCCAAGTT
TAAGGTGGACTACTCCCTGGAATTGGCCGAGAAACTGAAGCAGCTGGGCA
TCACGAAAATGTTTACGGACCAAGCTGAGTTTAGCAATCTGCTGGAATCC
CCCGAGGGCGTCTTTGTGTCCAAGGTGCTGCACAAGGCCACCATCGAGGT
GAATGAGGAGGGCACGGAGGCGGCGGCTGCCACCGGCATGATCATGATGA
CCCGCATGATGACCTTCCCGCTGCAGTTCCAGGCGGACCGGCCCTTCCTC
TACGTCATCTGGAATAAGAAGAACATCCTCTTCGCTGGCGCCTTCGTTAA
GGCTGCCTAAAAGCCCATTTCTCACTTCTTTCGTATTGTTTGTATTGTTG
TTGGAAAAGTATTTTTAAATAAATAAGCGCTCCATGATTAAAAAAAAAAA
AAAAAAA

SD11922.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
Spn6-RA 1563 Spn6-RA 187..1528 1..1342 6695 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:11:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 14013413..14014405 1..993 4860 99.3 Plus
chr2R 21145070 chr2R 14014968..14015316 991..1339 1730 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:54:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18126305..18127297 1..993 4950 99.9 Plus
2R 25286936 2R 18127862..18128213 991..1342 1760 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 18127504..18128496 1..993 4950 99.8 Plus
2R 25260384 2R 18129061..18129412 991..1342 1760 100 Plus
Blast to na_te.dros performed on 2019-03-16 15:11:13 has no hits.

SD11922.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:12:15 Download gff for SD11922.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 14013413..14014405 1..993 99 -> Plus
chr2R 14014971..14015316 994..1339 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:07:19 Download gff for SD11922.complete
Subject Subject Range Query Range Percent Splice Strand
Spn6-RA 1..1125 136..1260 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:41:10 Download gff for SD11922.complete
Subject Subject Range Query Range Percent Splice Strand
Spn6-RA 1..1125 136..1260 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:05:50 Download gff for SD11922.complete
Subject Subject Range Query Range Percent Splice Strand
Spn55B-RA 1..1125 136..1260 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:33:09 Download gff for SD11922.complete
Subject Subject Range Query Range Percent Splice Strand
Spn6-RA 1..1125 136..1260 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:37:34 Download gff for SD11922.complete
Subject Subject Range Query Range Percent Splice Strand
Spn55B-RA 1..1125 136..1260 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:15:05 Download gff for SD11922.complete
Subject Subject Range Query Range Percent Splice Strand
Spn6-RA 1..1339 1..1339 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:41:10 Download gff for SD11922.complete
Subject Subject Range Query Range Percent Splice Strand
Spn6-RA 1..1339 1..1339 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:05:50 Download gff for SD11922.complete
Subject Subject Range Query Range Percent Splice Strand
Spn55B-RA 1..1297 43..1339 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:33:09 Download gff for SD11922.complete
Subject Subject Range Query Range Percent Splice Strand
Spn6-RA 1..1339 1..1339 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:34 Download gff for SD11922.complete
Subject Subject Range Query Range Percent Splice Strand
Spn55B-RA 1..1297 43..1339 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:15 Download gff for SD11922.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18126305..18127297 1..993 99 -> Plus
2R 18127865..18128210 994..1339 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:15 Download gff for SD11922.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18126305..18127297 1..993 99 -> Plus
2R 18127865..18128210 994..1339 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:15 Download gff for SD11922.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18126305..18127297 1..993 99 -> Plus
2R 18127865..18128210 994..1339 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:05:50 Download gff for SD11922.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14013810..14014802 1..993 99 -> Plus
arm_2R 14015370..14015715 994..1339 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:05:34 Download gff for SD11922.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18127504..18128496 1..993 99 -> Plus
2R 18129064..18129409 994..1339 100   Plus

SD11922.pep Sequence

Translation from 135 to 1259

> SD11922.pep
MFDFNLEFARGGARFTSELFQLLSAGGLKENVVFSPFSIQTCIALAFAGS
QGETADEIAKALHFVSNFPPEVAQTFQFVLEKYRNSNLLRVANKLYVQEG
KQLKPAYQSAIKEQYHSEAESINFALNDAAAQAINAWVNAKTQGKITELV
SADSFSDNTRLVLLNALHFKGSWAHKFSEERTEEDIFWVGEEEQVKINYM
NQKAKFNYGFFEDLGCTALEMPYQDSDLSMFVLLPQERTGIYALAEKLKT
VNLVDLADKLTVEEVHVKFPKFKVDYSLELAEKLKQLGITKMFTDQAEFS
NLLESPEGVFVSKVLHKATIEVNEEGTEAAAATGMIMMTRMMTFPLQFQA
DRPFLYVIWNKKNILFAGAFVKAA*

SD11922.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11691-PA 374 GF11691-PA 1..374 1..374 1808 89.6 Plus
Dana\GF11763-PA 376 GF11763-PA 8..360 7..361 783 42.8 Plus
Dana\GF11762-PA 406 GF11762-PA 8..377 7..371 629 37.2 Plus
Dana\GF12698-PA 390 GF12698-PA 30..389 15..372 608 36.3 Plus
Dana\GF13145-PA 438 GF13145-PA 32..377 31..371 570 34.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21843-PA 374 GG21843-PA 1..374 1..374 1900 95.5 Plus
Dere\GG10790-PA 424 GG10790-PA 40..410 7..372 845 45 Plus
Dere\GG23230-PA 372 GG23230-PA 18..370 16..371 621 37.6 Plus
Dere\GG23260-PA 390 GG23260-PA 30..389 15..372 599 35.7 Plus
Dere\GG23463-PA 372 GG23463-PA 15..369 13..371 578 35.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20251-PA 377 GH20251-PA 1..373 1..373 1551 78.6 Plus
Dgri\GH19862-PA 382 GH19862-PA 11..381 7..372 822 43.7 Plus
Dgri\GH21519-PA 384 GH21519-PA 24..383 15..372 597 34.9 Plus
Dgri\GH18180-PA 386 GH18180-PA 1..370 6..368 574 37.6 Plus
Dgri\GH20378-PA 397 GH20378-PA 27..389 6..368 522 31.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
Spn55B-PA 374 CG10913-PA 1..374 1..374 1903 100 Plus
Spn42Da-PL 379 CG9453-PL 8..378 7..372 815 45.3 Plus
Spn42Da-PK 379 CG9453-PK 8..378 7..372 815 45.3 Plus
Spn42Da-PH 379 CG9453-PH 8..378 7..372 815 45.3 Plus
Spn42Da-PF 411 CG9453-PF 40..410 7..372 815 45.3 Plus
Spn42Da-PE 411 CG9453-PE 40..410 7..372 815 45.3 Plus
Spn42Da-PG 379 CG9453-PG 8..378 7..372 804 43.9 Plus
Spn42Da-PD 411 CG9453-PD 40..410 7..372 804 43.9 Plus
Spn42Da-PA 392 CG9453-PA 8..378 7..372 802 43.7 Plus
Spn42Da-PB 424 CG9453-PB 40..410 7..372 802 43.7 Plus
Spn42Da-PJ 374 CG9453-PJ 8..373 7..371 759 42.1 Plus
Spn42Da-PI 406 CG9453-PI 40..405 7..371 759 42.1 Plus
Spn42Dd-PB 372 CG9456-PB 18..370 16..371 622 37.9 Plus
Spn28F-PA 375 CG8137-PA 16..372 14..372 586 35.3 Plus
Spn38F-PA 372 CG9334-PA 16..368 14..371 585 35.9 Plus
Spn38F-PB 370 CG9334-PB 16..366 14..371 579 36 Plus
Spn43Aa-PA 390 CG12172-PA 30..389 15..372 578 34.3 Plus
Spn42Dc-PB 403 CG9455-PB 7..377 11..370 577 34 Plus
Spn42Dc-PA 403 CG9455-PA 7..377 11..370 577 34 Plus
Spn42Db-PC 388 CG9454-PC 5..374 7..371 570 34.7 Plus
Spn42De-PB 386 CG9460-PB 13..381 11..368 557 33.3 Plus
Spn42De-PA 404 CG9460-PA 31..399 11..368 557 33.3 Plus
Spn43Ab-PB 393 CG1865-PB 34..385 17..368 520 31.9 Plus
nec-PA 476 CG1857-PA 109..466 14..368 488 34.1 Plus
Spn28B-PB 378 CG6717-PB 17..375 15..372 480 30.2 Plus
Spn28B-PA 378 CG6717-PA 17..375 15..372 480 30.2 Plus
Spn47C-PC 382 CG7722-PC 18..381 15..372 448 28.6 Plus
Spn47C-PB 382 CG7722-PB 18..381 15..372 448 28.6 Plus
Spn47C-PA 382 CG7722-PA 18..381 15..372 448 28.6 Plus
Spn28Da-PB 384 CG31902-PB 16..370 14..371 444 29.5 Plus
Spn27A-PB 447 CG11331-PB 92..438 30..368 409 32.4 Plus
Spn27A-PA 447 CG11331-PA 92..438 30..368 409 32.4 Plus
Spn88Ea-PB 427 CG18525-PB 29..419 1..370 403 29.1 Plus
Spn88Ea-PA 427 CG18525-PA 29..419 1..370 403 29.1 Plus
Spn28Db-PB 377 CG33121-PB 36..370 29..372 399 27.7 Plus
Spn42Db-PD 286 CG9454-PD 5..282 7..284 382 31.1 Plus
Spn53F-PB 379 CG10956-PB 16..374 9..368 377 25.8 Plus
Spn88Eb-PA 426 CG6687-PA 57..418 31..370 352 26 Plus
Spn77Ba-PC 450 CG6680-PC 67..442 3..368 329 30.6 Plus
Spn77Ba-PB 450 CG6680-PB 67..442 3..368 329 30.6 Plus
Spn77Ba-PA 450 CG6680-PA 67..442 3..368 329 30.6 Plus
Spn31A-PA 382 CG4804-PA 18..381 19..372 308 24.9 Plus
Spn28Dc-PA 536 CG7219-PA 115..527 15..368 270 24.3 Plus
Spn43Ad-PA 407 CG1859-PA 38..405 10..371 266 25.1 Plus
Spn100A-PA 649 CG1342-PA 340..614 108..358 262 26.1 Plus
Spn77Bc-PB 416 CG6289-PB 39..410 14..370 242 23.5 Plus
Spn77Bc-PA 416 CG6289-PA 39..410 14..370 242 23.5 Plus
Spn75F-PB 356 CG32203-PB 22..297 15..295 220 24 Plus
Spn77Bb-PA 362 CG6663-PA 18..356 47..370 219 24.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19420-PA 376 GI19420-PA 1..373 1..373 1597 82 Plus
Dmoj\GI19810-PA 401 GI19810-PA 11..381 7..372 783 43.4 Plus
Dmoj\GI19487-PA 384 GI19487-PA 24..383 15..372 595 35.4 Plus
Dmoj\GI10134-PA 406 GI10134-PA 5..378 3..370 594 37.6 Plus
Dmoj\GI10133-PA 403 GI10133-PA 8..374 7..368 572 36.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10534-PA 376 GL10534-PA 1..373 1..373 1757 87.7 Plus
Dper\GL10965-PA 393 GL10965-PA 7..378 6..372 781 46.2 Plus
Dper\GL10964-PA 379 GL10964-PA 17..374 19..369 638 38.5 Plus
Dper\GL11156-PA 390 GL11156-PA 30..389 15..372 614 36 Plus
Dper\GL11126-PA 421 GL11126-PA 44..416 5..368 613 37.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10637-PA 376 GA10637-PA 1..373 1..373 1769 88.5 Plus
Dpse\GA21798-PA 393 GA21798-PA 7..378 6..372 784 45.7 Plus
Dpse\GA24549-PA 379 GA24549-PA 17..374 19..369 634 38.5 Plus
Dpse\GA11452-PA 390 GA11452-PA 30..389 15..372 617 36.3 Plus
Dpse\GA26905-PA 417 GA26905-PA 50..416 11..372 615 37.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21844-PA 374 GM21844-PA 1..374 1..374 1955 97.9 Plus
Dsec\GM20841-PA 347 GM20841-PA 1..333 45..372 736 42.9 Plus
Dsec\GM20904-PA 372 GM20904-PA 18..370 16..371 627 38.2 Plus
Dsec\GM11074-PA 321 GM11074-PA 40..315 7..282 608 42 Plus
Dsec\GM20933-PA 390 GM20933-PA 30..389 15..372 588 34.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11338-PA 374 GD11338-PA 1..374 1..374 1958 98.4 Plus
Dsim\GD10292-PA 424 GD10292-PA 40..410 7..372 834 44.2 Plus
Dsim\GD10459-PA 390 GD10459-PA 30..389 15..372 591 35.2 Plus
Dsim\GD10430-PA 403 GD10430-PA 7..377 11..370 576 33.7 Plus
Dsim\Spn2-PA 374 GD22426-PA 14..371 12..371 564 36.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22484-PA 376 GJ22484-PA 1..373 1..373 1638 80.4 Plus
Dvir\GJ18486-PA 377 GJ18486-PA 11..373 7..368 788 44.4 Plus
Dvir\GJ15151-PA 387 GJ15151-PA 27..386 15..372 602 35.4 Plus
Dvir\GJ17545-PA 407 GJ17545-PA 11..377 15..371 569 32.7 Plus
Dvir\GJ23351-PA 348 GJ23351-PA 6..337 48..374 512 36.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:27:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22245-PA 374 GK22245-PA 1..373 1..373 1711 85 Plus
Dwil\GK20760-PA 433 GK20760-PA 44..412 6..369 799 42.8 Plus
Dwil\GK20758-PA 404 GK20758-PA 30..399 6..372 789 41 Plus
Dwil\GK20759-PA 401 GK20759-PA 30..396 6..372 782 41.3 Plus
Dwil\GK20756-PA 361 GK20756-PA 16..345 7..334 663 39.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:27:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11922-PA 374 GE11922-PA 1..374 1..374 1919 96.5 Plus
Dyak\GE24388-PA 392 GE24388-PA 8..378 7..372 841 44.5 Plus
Dyak\GE19081-PA 374 GE19081-PA 18..372 16..371 644 38.8 Plus
Dyak\GE19110-PA 390 GE19110-PA 30..389 15..372 585 34.9 Plus
Dyak\GE11098-PA 375 GE11098-PA 14..372 12..371 582 34.3 Plus

SD11922.hyp Sequence

Translation from 135 to 1259

> SD11922.hyp
MFDFNLEFARGGARFTSELFQLLSAGGLKENVVFSPFSIQTCIALAFAGS
QGETADEIAKALHFVSNFPPEVAQTFQFVLEKYRNSNLLRVANKLYVQEG
KQLKPAYQSAIKEQYHSEAESINFALNDAAAQAINAWVNAKTQGKITELV
SADSFSDNTRLVLLNALHFKGSWAHKFSEERTEEDIFWVGEEEQVKINYM
NQKAKFNYGFFEDLGCTALEMPYQDSDLSMFVLLPQERTGIYALAEKLKT
VNLVDLADKLTVEEVHVKFPKFKVDYSLELAEKLKQLGITKMFTDQAEFS
NLLESPEGVFVSKVLHKATIEVNEEGTEAAAATGMIMMTRMMTFPLQFQA
DRPFLYVIWNKKNILFAGAFVKAA*

SD11922.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
Spn55B-PA 374 CG10913-PA 1..374 1..374 1903 100 Plus
Spn42Da-PL 379 CG9453-PL 8..378 7..372 815 45.3 Plus
Spn42Da-PK 379 CG9453-PK 8..378 7..372 815 45.3 Plus
Spn42Da-PH 379 CG9453-PH 8..378 7..372 815 45.3 Plus
Spn42Da-PF 411 CG9453-PF 40..410 7..372 815 45.3 Plus