BDGP Sequence Production Resources |
Search the DGRC for SD13613
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 136 |
Well: | 13 |
Vector: | pOT2 |
Associated Gene/Transcript | Rlb1-RA |
Protein status: | SD13613.pep: gold |
Preliminary Size: | 2266 |
Sequenced Size: | 1435 |
Gene | Date | Evidence |
---|---|---|
CG8161 | 2002-01-01 | Sim4 clustering to Release 2 |
CG8161 | 2002-05-18 | Blastp of sequenced clone |
CG8161 | 2003-01-01 | Sim4 clustering to Release 3 |
Rlb1 | 2008-04-29 | Release 5.5 accounting |
Rlb1 | 2008-08-15 | Release 5.9 accounting |
Rlb1 | 2008-12-18 | 5.12 accounting |
1435 bp (1435 high quality bases) assembled on 2002-05-18
GenBank Submission: AY119200
> SD13613.complete AAAACAGCATGGACAGATTGAAATTCAATAATTTGGTGATATCCAACAAG AAGGTCATTCAAAAGGCACGCGCCCAGACCATCGCCAAAATCGTACAAAA GCTGCGAAAGACAAAAGAGGCTCTGGCCAAAAATCCAGACAGTGAAAAGG AAAAGATTCGTTTACGCAAGAACACAGAATGCCTGGCCCAGTTGAAGGCT CTAAAATATATGGATATGGTACGCCAGTCGCTCCTGCAGGAGGGCACAAA TCCCAATGCGGTGATTGCTAACGAGCGCTCCACGCCGGATGAACTGGGCA TTGCCATGCTGCGGCTAAACAAATTGATGCACGGACTGGTGGACAAGTTT GTGGAAACCTTGAAGCTGAGCACCACCGATAAGGAGGCCAAGTGGCGTGA GGAGATCCTAGAGACGAGCAAGCGAAGGGCCAAAATAGAACGCACTGAGG AGCGGAAGAGGAAGCGCAAGGAGCTGAAGGAGCAGAAGGCCCAAACCAAA AACCGACTGGAGTGGTTAGAGCAGAACAAAGTGGTGGATGCAGATGTTAA TGGAGCAACTGCGGAAACGCCCACTCTTCAAGTCAGCAAAGTAAATGATC AGGAAATACCACAGTCTTTTGCAAAAACTGAAAATTCTCCAGTTCTCAAA GTCAAAAAGGAAAAGACACCTAAAACACCAGCCAAAAAAGAAAGAAACCT TCAGAAAAAACAAGCTTTTGATGAGCAGATCAACCCGGAGATAACTAAGC TCAGTTCCAAAAAGCAGAATTTAAATACAATCAAGGAGAATAATGCAGAG CCACAACTAGAAGGCAGACCGAAAGAATCTAAGCCAAAACCCTTCGAGAA AAAACCAGCCAGAGAGCAGAAGCCTAAGCCACGATTAGAAAGGCAGCCAA GTATCGATGAAGAAGAACCACAACTTGACAATAATCGTCCCACACATGTC GTTGATCCCTTCTTCATTACGGAATCAGGCCAGCCCTACTTGTCCAGCGC CGTGGTTCTTTCCGGGGACAATGACAGCGAAGCTGATGAGGAACAGGCAC CGCCGCCAGTCAAAAGGTTCCGCAATGAGGATCGACGGTCGAACACATAT CGGGAGAAACCGGAAAGACAGCCAGAGTTCAAAGCGAGAAAGCCAACTGA TGATCGTCATCCCTCCTGGCTGGCTAAGCAACAGCAGAAACCAATCATTG GTGATTTTAGAGGCAAGAAGATTACATTCGGCGACGACGGCCAGGCGGCG GAAATTATTGCTCCAAGTATCAATCAATTAACCGCTACTGCTGCTCCTTT GCCCACCGATGGCATGCACCCGTCTTGGGTGGCCAAACAGAAGTTTAAGC CGAAAATTGCCGCGTTTCAGGGCACAAAGATTAAGTTTGACGAAGATTAA AGATGATGTCAATGGTAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rlb1-RA | 1544 | Rlb1-RA | 128..1544 | 1..1417 | 7085 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
diver | 6112 | diver Tinker 6112bp | 4262..4389 | 267..143 | 135 | 62.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 5339183..5339217 | 1..35 | 100 | -> | Plus |
chr3R | 5339275..5340655 | 36..1416 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rlb1-RA | 1..1392 | 9..1400 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rlb1-RA | 1..1392 | 9..1400 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rlb1-RA | 1..1392 | 9..1400 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rlb1-RA | 1..1392 | 9..1400 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rlb1-RA | 1..1392 | 9..1400 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rlb1-RA | 10..1425 | 1..1416 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rlb1-RA | 17..1432 | 1..1416 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rlb1-RA | 29..1444 | 1..1416 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rlb1-RA | 10..1425 | 1..1416 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Rlb1-RA | 29..1444 | 1..1416 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9513355..9513389 | 1..35 | 100 | -> | Plus |
3R | 9513447..9514827 | 36..1416 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9513355..9513389 | 1..35 | 100 | -> | Plus |
3R | 9513447..9514827 | 36..1416 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9513355..9513389 | 1..35 | 100 | -> | Plus |
3R | 9513447..9514827 | 36..1416 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 5339077..5339111 | 1..35 | 100 | -> | Plus |
arm_3R | 5339169..5340549 | 36..1416 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9254278..9255658 | 36..1416 | 100 | Plus | |
3R | 9254186..9254220 | 1..35 | 100 | -> | Plus |
Translation from 2 to 1399
> SD13613.hyp NSMDRLKFNNLVISNKKVIQKARAQTIAKIVQKLRKTKEALAKNPDSEKE KIRLRKNTECLAQLKALKYMDMVRQSLLQEGTNPNAVIANERSTPDELGI AMLRLNKLMHGLVDKFVETLKLSTTDKEAKWREEILETSKRRAKIERTEE RKRKRKELKEQKAQTKNRLEWLEQNKVVDADVNGATAETPTLQVSKVNDQ EIPQSFAKTENSPVLKVKKEKTPKTPAKKERNLQKKQAFDEQINPEITKL SSKKQNLNTIKENNAEPQLEGRPKESKPKPFEKKPAREQKPKPRLERQPS IDEEEPQLDNNRPTHVVDPFFITESGQPYLSSAVVLSGDNDSEADEEQAP PPVKRFRNEDRRSNTYREKPERQPEFKARKPTDDRHPSWLAKQQQKPIIG DFRGKKITFGDDGQAAEIIAPSINQLTATAAPLPTDGMHPSWVAKQKFKP KIAAFQGTKIKFDED*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rlb1-PA | 463 | CG8161-PA | 1..463 | 3..465 | 2373 | 100 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1341..1627 | 25..308 | 163 | 26.1 | Plus |
rudhira-PC | 2075 | CG43154-PC | 1341..1627 | 25..308 | 163 | 26.1 | Plus |
Translation from 8 to 1399
> SD13613.pep MDRLKFNNLVISNKKVIQKARAQTIAKIVQKLRKTKEALAKNPDSEKEKI RLRKNTECLAQLKALKYMDMVRQSLLQEGTNPNAVIANERSTPDELGIAM LRLNKLMHGLVDKFVETLKLSTTDKEAKWREEILETSKRRAKIERTEERK RKRKELKEQKAQTKNRLEWLEQNKVVDADVNGATAETPTLQVSKVNDQEI PQSFAKTENSPVLKVKKEKTPKTPAKKERNLQKKQAFDEQINPEITKLSS KKQNLNTIKENNAEPQLEGRPKESKPKPFEKKPAREQKPKPRLERQPSID EEEPQLDNNRPTHVVDPFFITESGQPYLSSAVVLSGDNDSEADEEQAPPP VKRFRNEDRRSNTYREKPERQPEFKARKPTDDRHPSWLAKQQQKPIIGDF RGKKITFGDDGQAAEIIAPSINQLTATAAPLPTDGMHPSWVAKQKFKPKI AAFQGTKIKFDED*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18935-PA | 416 | GF18935-PA | 2..416 | 1..462 | 1250 | 62.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16831-PA | 461 | GG16831-PA | 1..461 | 1..463 | 1935 | 86.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18201-PA | 449 | GH18201-PA | 2..449 | 1..463 | 895 | 48 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Rlb1-PA | 463 | CG8161-PA | 1..463 | 1..463 | 2373 | 100 | Plus |
rudhira-PE | 2075 | CG43154-PE | 1341..1627 | 23..306 | 163 | 26.1 | Plus |
rudhira-PC | 2075 | CG43154-PC | 1341..1627 | 23..306 | 163 | 26.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10154-PA | 479 | GI10154-PA | 2..479 | 1..462 | 851 | 41.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21612-PA | 452 | GL21612-PA | 2..452 | 1..463 | 1210 | 56.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20858-PA | 452 | GA20858-PA | 2..452 | 1..463 | 1205 | 55.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23810-PA | 468 | GM23810-PA | 1..468 | 1..463 | 2268 | 93.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Rlb1-PA | 468 | GD18618-PA | 1..468 | 1..463 | 2229 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10856-PA | 516 | GJ10856-PA | 2..516 | 1..462 | 889 | 44.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13837-PA | 418 | GK13837-PA | 2..418 | 1..409 | 530 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25956-PA | 471 | GE25956-PA | 1..471 | 1..463 | 1972 | 85.2 | Plus |