Clone SD14666 Report

Search the DGRC for SD14666

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:146
Well:66
Vector:pOT2
Associated Gene/TranscriptCG4098-RA
Protein status:SD14666.pep: gold
Preliminary Size:924
Sequenced Size:1049

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4098 2002-01-01 Sim4 clustering to Release 2
CG4098 2002-06-13 Blastp of sequenced clone
CG4098 2003-01-01 Sim4 clustering to Release 3
CG4098 2008-04-29 Release 5.5 accounting
CG4098 2008-08-15 Release 5.9 accounting
CG4098 2008-12-18 5.12 accounting

Clone Sequence Records

SD14666.complete Sequence

1049 bp (1049 high quality bases) assembled on 2002-06-13

GenBank Submission: AY122264

> SD14666.complete
AGAATTCAGTCCAATGACGAGTTTCGAGTTTGCACTGCTGCCGCTTCTGT
TTTTGCCACTGATCCTGGAAAACCCGCTAACCTCCGCCCAAATGATGTCA
TCGCTGGTGAAGCCGGGCATTTTCCGGCACCTAATGTGCCGCAACAACAT
GTATCCGCGCAGCTCAGTCCTCCGGTACCCAGTTTCCGACGAACAGGTCT
TCTGGTCGGAGCCGTTCCCGGACTACTGCCCGCCTGCGTACACGGCGCCA
CATATTGGCGGGCAGGTGTGGGCTGATCCGCCGTTGCCCAGCGACACATT
CTGGCCACAGTGGAATCAGCTGGATGGACAGGTAAACCGCGAATCCTTTC
ACGGTGCCTACAACGTGCAGAATGGACTGCCCCTAAATCCGATCGGGCGT
ACCGGACTAACCGGACGTGGTTCGCTAGGCAGATGGGGTCCAAATCATGC
CGCAGATCCAATCGTCACGCGCTGGAAGCGTGACGACCAAGGAGCAATTG
TGGCCAACCCGACAACCGGCAAGAATATCATACAGATGGTTGCCATACAG
CGGTCCGACAACAAGTTGTGGGCCATTCCCGGTGGAATGGTCGATCCCGG
CGAGAATGTCAGTGTCACCCTTAAGCGGGAGTTCACCGAGGAGGCATTGA
ATTTCACGGACAAAGCCAACATGGTTGAGCGATTTTTTCAAGCGGGAGGC
GTTCAGGTATACCAAGGCTACGTAGACGATTTTCGAAACACGGACAACGC
TTGGATGGAAACCACTGCGCTGAACTTCCACGATGAAGACGGGAGCCAGG
TGGGACAATTGGAGCTAATGGCCGGTGACGATGCCTCCAATGTGCGCTGG
ACGGACGTCGACTCGAATCTCAAGCTGCACGCCAATCATGCCGACATAGT
CCGTGAGGTTGTCATCCGACGAAATGCACACTGGTAGAAACTAGACTGAA
ACTATAAGAGTTAAGATCAACTGCCTAATGGTTGAAGAAAAACCAATTTT
AAATAATAACATAGCCTTCAATGAAACAAAAAAAAAAAAAAAAAAAAAA

SD14666.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4098-RA 1134 CG4098-RA 108..1134 1..1027 5135 100 Plus
CG4098.a 1027 CG4098.a 1..1027 1..1027 5135 100 Plus
nc_13011.a 617 nc_13011.a 4..617 1..618 3005 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16598472..16598994 523..1 2615 100 Minus
chr3L 24539361 chr3L 16590225..16590733 1027..519 2530 99.8 Minus
chr3L 24539361 chr3L 16597912..16598420 1027..519 2530 99.8 Minus
chr3L 24539361 chr3L 16590781..16590866 523..438 400 97.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:55:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16608698..16609220 523..1 2615 100 Minus
3L 28110227 3L 16600449..16600959 1029..519 2540 99.8 Minus
3L 28110227 3L 16608136..16608646 1029..519 2540 99.8 Minus
3L 28110227 3L 16601007..16601092 523..438 400 97.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16601798..16602320 523..1 2615 100 Minus
3L 28103327 3L 16601236..16601746 1029..519 2540 99.8 Minus
3L 28103327 3L 16593549..16594059 1029..519 2540 99.8 Minus
3L 28103327 3L 16594107..16594192 523..438 400 97.6 Minus
Blast to na_te.dros performed on 2019-03-16 18:56:27 has no hits.

SD14666.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:57:11 Download gff for SD14666.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16597912..16598416 523..1027 100 <- Minus
chr3L 16598473..16598994 1..522 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:08:03 Download gff for SD14666.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 1..924 14..937 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:21:00 Download gff for SD14666.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 1..924 14..937 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:29:29 Download gff for SD14666.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 1..924 14..937 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:11:53 Download gff for SD14666.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 1..924 14..937 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:01 Download gff for SD14666.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 1..924 14..937 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:46:58 Download gff for SD14666.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 1..1027 1..1027 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:21:00 Download gff for SD14666.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 1..1027 1..1027 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:29 Download gff for SD14666.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 128..1154 1..1027 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:11:53 Download gff for SD14666.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 1..1027 1..1027 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:01 Download gff for SD14666.complete
Subject Subject Range Query Range Percent Splice Strand
CG4098-RA 128..1154 1..1027 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:57:11 Download gff for SD14666.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16608138..16608642 523..1027 100 <- Minus
3L 16608699..16609220 1..522 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:57:11 Download gff for SD14666.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16608138..16608642 523..1027 100 <- Minus
3L 16608699..16609220 1..522 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:57:11 Download gff for SD14666.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16608138..16608642 523..1027 100 <- Minus
3L 16608699..16609220 1..522 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:29 Download gff for SD14666.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16601238..16601742 523..1027 100 <- Minus
arm_3L 16601799..16602320 1..522 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:44:27 Download gff for SD14666.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16601238..16601742 523..1027 100 <- Minus
3L 16601799..16602320 1..522 100   Minus

SD14666.hyp Sequence

Translation from 0 to 936

> SD14666.hyp
EFSPMTSFEFALLPLLFLPLILENPLTSAQMMSSLVKPGIFRHLMCRNNM
YPRSSVLRYPVSDEQVFWSEPFPDYCPPAYTAPHIGGQVWADPPLPSDTF
WPQWNQLDGQVNRESFHGAYNVQNGLPLNPIGRTGLTGRGSLGRWGPNHA
ADPIVTRWKRDDQGAIVANPTTGKNIIQMVAIQRSDNKLWAIPGGMVDPG
ENVSVTLKREFTEEALNFTDKANMVERFFQAGGVQVYQGYVDDFRNTDNA
WMETTALNFHDEDGSQVGQLELMAGDDASNVRWTDVDSNLKLHANHADIV
REVVIRRNAHW*

SD14666.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4098-PA 307 CG4098-PA 1..307 5..311 1667 100 Plus

SD14666.pep Sequence

Translation from 13 to 936

> SD14666.pep
MTSFEFALLPLLFLPLILENPLTSAQMMSSLVKPGIFRHLMCRNNMYPRS
SVLRYPVSDEQVFWSEPFPDYCPPAYTAPHIGGQVWADPPLPSDTFWPQW
NQLDGQVNRESFHGAYNVQNGLPLNPIGRTGLTGRGSLGRWGPNHAADPI
VTRWKRDDQGAIVANPTTGKNIIQMVAIQRSDNKLWAIPGGMVDPGENVS
VTLKREFTEEALNFTDKANMVERFFQAGGVQVYQGYVDDFRNTDNAWMET
TALNFHDEDGSQVGQLELMAGDDASNVRWTDVDSNLKLHANHADIVREVV
IRRNAHW*

SD14666.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10516-PA 276 GF10516-PA 1..276 27..307 1203 79.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15867-PA 307 GG15867-PA 1..307 1..307 1511 93.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16459-PA 281 GH16459-PA 1..281 27..307 1153 74.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4098-PA 307 CG4098-PA 1..307 1..307 1667 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16714-PA 278 GI16714-PA 1..278 27..307 1170 74.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:41:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17977-PA 308 GL17977-PA 1..308 1..307 1330 78.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17956-PA 308 GA17956-PA 1..308 1..307 1330 78.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24384-PA 307 GM24384-PA 1..307 1..307 1589 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12456-PA 307 GD12456-PA 1..307 1..307 1593 97.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12458-PA 282 GJ12458-PA 1..282 27..307 1174 75.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21191-PA 282 GK21191-PA 1..282 27..307 1215 78.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22206-PA 307 GE22206-PA 20..307 20..307 1488 95.5 Plus