Clone SD14859 Report

Search the DGRC for SD14859

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:148
Well:59
Vector:pOT2
Associated Gene/TranscriptSaf6-RB
Protein status:SD14859.pep: gold
Sequenced Size:2330

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3883 2010-12-02 CDS novel splice

Clone Sequence Records

SD14859.complete Sequence

2330 bp assembled on 2011-02-18

GenBank Submission: BT126084.1

> SD14859.complete
TTTATTTTGTGGTGCAGCTTCGTTGTTTATTTACCAACTGTTGAAAATAT
ATACATTTATGAATTATACAAAACCAAGAAGATGAAAACCTCTGGCGCCA
GCAATACTGACGAGCTGAACAAGTCATCGCACAGCAAAGTCAGCAAAAAG
TCCACTAAGTCGCGATCTAAGTCGGCGAAATTGGAGTTGACTGGAAAGAA
TTCCCTGTCGGCATCCGCATCATCCTCCATCGCATCCGCAGTGAGCGGGG
GCGTTGCAGTGGGCAGCCTGCCGGCCACGCCCACTCACCTAAACATGGTG
ACAACGCCCACCACGCCAACATCTAGTCTGGGTAACTACAATCTGTTTGA
CGCCTCATTTGCGGTAGCAGGAAGTGGTGGGCACGGACTTGCAGGCGGCA
TCGCGGGCGCAGAAGCCTCTGGCAACTCCAGTCGAATGAAGAGCTATGCT
GGTTTCGATCCGCGCAGCATCAAGATCTTTTGGGAGCAGCACGACCAGAC
CGATGTGGAACTCTCCCAGGATGTGTGCGCCCGTTTGGCGGAAGATGCCT
CCTACAAAGTCTGGGAGCTGATCAATAATGTCAAAATATACTCGCGCCAC
TCGGGCGGAGTGGTGACATACGACCTGGTGAACGAAGTGCTAAAAGATGC
CGATGTGCCGCCTATGCTGGGTGCGATGGACAGCGACTGGGACCGGATCG
ACTATGACGGCAGTTTTTACTTTCACTCGGATAAGATCTTCGAGCTGAGC
GCGGAGTTTCAGAAGGAAGTCAATCTGTGCACACCTGATGATGCAGACTT
TCAGAGCATCTGCCCAGTGGAGGATAAGCACATGGACCAACTAAGACAGT
GTGTCCAGAGTCTTGTGACGGCAGCCCTTTTTGCGGACAGCAAATCCCAG
ACGGCCGCCGTCTGCCATGCTTTTCAGACACCCCTGATGGGATCTATCTA
CCGAGTGATTGTGAGTAAGATGGTCCAGTTGCTAGCCTTTAAGCAGCAGG
ACCATTTGAGCCAGCGATGCTGGCGACTGCTCCGAGCATGCAACTACAAC
GCCACTGCTAATCACAATGCCTGCCGGCCGGAGTACTTCAACCTGGCCGA
GGTACTGGTCAGCCAGCTAATGGCACCTTACGAAACTATCAAAGCTCCAC
ACGTCGACCCAGATCCGGGACAAACCACCTCCATCAAAATGGAGTTTGAA
GAAGAACTAAAGGTTGAGCCAGACCAGTGCCATAATCCGGAAACCCAGGA
AAATCCGGAGGTCATGGGAGTAGAGAAACAGGAGCAAGAACCCCAGATGT
TTCCGGGTGAGAGCACCATGGAACACACAATCTACAAGCTGCAATCGGAG
GAGGAGGAATTGAATCCTCAGCCGGAGGCGGAACACCTATCCAGCTACTT
TGCCTGTCCAGTCGGCAATGGCCTGGTGGACGAGCTGTGTGAAACTATAG
GACAGCTGGCATCTCAAAGTGGTTACCTACATGCAGAGTGCCTGTTTTTG
ATCAAGAGACGCCTAGCGAGATTCTTCGAAGGTCGCCACGTCAGCAGTGA
GAGAGACTTTAGGTATATCAGTAGAGCAGTGCGCGGTCTCATTGCCCTGG
GAGAATATGCCTTTCGTGAGTTTATTCCCTACATCTACAAACTGCGCGTC
GAGGAAATCCCGGATAGCCTGTGGCCGGATCTGGCTCCGGCTGCCATCTT
CCTTGGCGGTCATGATGACGTATACCTGTATGAATGGCTGGAGTACGGAT
GCGGTGCTGCTCTGCAGCCCTTCTTGGTCCACTATGCGCGAGCCTACGAA
AAGATGGTAACCAGACGGTATGTGAAGGCCAAACAACCCGCTTACAGAAT
AGAATCAGTGCCGGGAGTGCGTCGGTTGGAATGGAGTACTCTTGCGGCAG
CCATGTGCCACGGAGACGATCCTAGCAAGGCACTCAAACCGAAGCCTACG
CTCTGCGAGGCTTTCCCCGACCTTCAGTCACCAAATCTTCAGCTCAACTG
CGCGGGCAACATCCGCTTTAAGTTTGCAGGATGCCGCCCGGTGCTGCTGA
AGCCGAAGGTTGCGACTGTTCCCCACTCCGAAGACTCGCCTTCGTCGGCA
GCGAACGGTGGTGGGGGTGGCGGTGCCAGCTCCGACATCCTGATCGCCAA
ACGAAAACTCTTTAAGCCCCTGACCAACGTGAGAAAGTGGTCGCCCATCA
GTGGCTATCACTACCTAAGGATCTGAAAGGGACTTGGGAAAGTATTATAA
GACCTTCTGGAGGTCCAGGAGGACCTGGGGATCTCAATAAAACTGTTCGT
TTACTTTAAAAAAAAAAAAAAAAAAAAAAA

SD14859.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 814119..815097 1555..577 4760 99.1 Minus
chr2L 23010047 chr2L 813252..813769 2307..1790 2530 99.2 Minus
chr2L 23010047 chr2L 815346..815783 438..1 2175 99.8 Minus
chr2L 23010047 chr2L 813826..814062 1790..1554 1170 99.6 Minus
chr2L 23010047 chr2L 815146..815284 576..438 695 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 814243..815221 1555..577 4895 100 Minus
2L 23513712 2L 813375..813893 2308..1790 2580 99.8 Minus
2L 23513712 2L 815475..815912 438..1 2190 100 Minus
2L 23513712 2L 813950..814186 1790..1554 1185 100 Minus
2L 23513712 2L 815275..815413 576..438 695 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 814243..815221 1555..577 4895 100 Minus
2L 23513712 2L 813375..813893 2308..1790 2580 99.8 Minus
2L 23513712 2L 815475..815912 438..1 2190 100 Minus
2L 23513712 2L 813950..814186 1790..1554 1185 100 Minus
2L 23513712 2L 815275..815413 576..438 695 100 Minus
Blast to na_te.dros performed on 2019-03-17 01:44:38 has no hits.

SD14859.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:45:39 Download gff for SD14859.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 813252..813769 1790..2307 99 <- Minus
chr2L 813827..814060 1556..1789 99 <- Minus
chr2L 814119..815097 577..1555 99 <- Minus
chr2L 815146..815283 439..576 100 <- Minus
chr2L 815346..815783 1..438 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-02-18 12:57:02 Download gff for SD14859.complete
Subject Subject Range Query Range Percent Splice Strand
Saf6-RA 1..2154 82..2226 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:51:07 Download gff for SD14859.complete
Subject Subject Range Query Range Percent Splice Strand
Saf6-RB 1..2145 82..2226 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:09:22 Download gff for SD14859.complete
Subject Subject Range Query Range Percent Splice Strand
Saf6-RB 1..2145 82..2226 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-18 12:57:01 Download gff for SD14859.complete
Subject Subject Range Query Range Percent Splice Strand
Saf6-RA 40..2355 1..2307 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:51:07 Download gff for SD14859.complete
Subject Subject Range Query Range Percent Splice Strand
Saf6-RB 39..2345 1..2307 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:09:22 Download gff for SD14859.complete
Subject Subject Range Query Range Percent Splice Strand
Saf6-RB 39..2345 1..2307 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:45:39 Download gff for SD14859.complete
Subject Subject Range Query Range Percent Splice Strand
2L 813951..814184 1556..1789 100 <- Minus
2L 813376..813893 1790..2307 99 <- Minus
2L 814243..815221 577..1555 100 <- Minus
2L 815275..815412 439..576 100 <- Minus
2L 815475..815912 1..438 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:45:39 Download gff for SD14859.complete
Subject Subject Range Query Range Percent Splice Strand
2L 813951..814184 1556..1789 100 <- Minus
2L 813376..813893 1790..2307 99 <- Minus
2L 814243..815221 577..1555 100 <- Minus
2L 815275..815412 439..576 100 <- Minus
2L 815475..815912 1..438 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:45:39 Download gff for SD14859.complete
Subject Subject Range Query Range Percent Splice Strand
2L 813951..814184 1556..1789 100 <- Minus
2L 813376..813893 1790..2307 99 <- Minus
2L 814243..815221 577..1555 100 <- Minus
2L 815275..815412 439..576 100 <- Minus
2L 815475..815912 1..438 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:51:07 Download gff for SD14859.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 813376..813893 1790..2307 99 <- Minus
arm_2L 813951..814184 1556..1789 100 <- Minus
arm_2L 814243..815221 577..1555 100 <- Minus
arm_2L 815275..815412 439..576 100 <- Minus
arm_2L 815475..815912 1..438 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:59:44 Download gff for SD14859.complete
Subject Subject Range Query Range Percent Splice Strand
2L 813376..813893 1790..2307 99 <- Minus
2L 813951..814184 1556..1789 100 <- Minus
2L 814243..815221 577..1555 100 <- Minus
2L 815275..815412 439..576 100 <- Minus
2L 815475..815912 1..438 100   Minus

SD14859.pep Sequence

Translation from 0 to 2225

> SD14859.pep
FILWCSFVVYLPTVENIYIYELYKTKKMKTSGASNTDELNKSSHSKVSKK
STKSRSKSAKLELTGKNSLSASASSSIASAVSGGVAVGSLPATPTHLNMV
TTPTTPTSSLGNYNLFDASFAVAGSGGHGLAGGIAGAEASGNSSRMKSYA
GFDPRSIKIFWEQHDQTDVELSQDVCARLAEDASYKVWELINNVKIYSRH
SGGVVTYDLVNEVLKDADVPPMLGAMDSDWDRIDYDGSFYFHSDKIFELS
AEFQKEVNLCTPDDADFQSICPVEDKHMDQLRQCVQSLVTAALFADSKSQ
TAAVCHAFQTPLMGSIYRVIVSKMVQLLAFKQQDHLSQRCWRLLRACNYN
ATANHNACRPEYFNLAEVLVSQLMAPYETIKAPHVDPDPGQTTSIKMEFE
EELKVEPDQCHNPETQENPEVMGVEKQEQEPQMFPGESTMEHTIYKLQSE
EEELNPQPEAEHLSSYFACPVGNGLVDELCETIGQLASQSGYLHAECLFL
IKRRLARFFEGRHVSSERDFRYISRAVRGLIALGEYAFREFIPYIYKLRV
EEIPDSLWPDLAPAAIFLGGHDDVYLYEWLEYGCGAALQPFLVHYARAYE
KMVTRRYVKAKQPAYRIESVPGVRRLEWSTLAAAMCHGDDPSKALKPKPT
LCEAFPDLQSPNLQLNCAGNIRFKFAGCRPVLLKPKVATVPHSEDSPSSA
ANGGGGGGASSDILIAKRKLFKPLTNVRKWSPISGYHYLRI*

SD14859.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14825-PA 708 GF14825-PA 45..708 81..741 2595 74.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24629-PA 717 GG24629-PA 1..717 28..741 3255 94.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10497-PA 702 GH10497-PA 1..702 28..741 2353 65.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
Saf6-PB 714 CG3883-PB 1..714 28..741 3752 100 Plus
Saf6-PA 717 CG3883-PA 1..717 28..741 3738 99.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18014-PA 718 GI18014-PA 1..718 28..741 2494 66.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18634-PA 704 GL18634-PA 29..704 64..741 2471 72.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17749-PA 712 GA17749-PA 1..712 28..741 2535 73.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:51:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16645-PA 717 GM16645-PA 1..717 28..741 3728 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22941-PA 717 GD22941-PA 1..717 28..741 3759 96.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19648-PA 733 GJ19648-PA 1..733 28..741 2397 66.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24415-PA 703 GK24415-PA 1..703 28..741 2111 58.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15931-PA 717 GE15931-PA 1..717 28..741 3317 95.3 Plus

SD14859.hyp Sequence

Translation from 0 to 2225

> SD14859.hyp
FILWCSFVVYLPTVENIYIYELYKTKKMKTSGASNTDELNKSSHSKVSKK
STKSRSKSAKLELTGKNSLSASASSSIASAVSGGVAVGSLPATPTHLNMV
TTPTTPTSSLGNYNLFDASFAVAGSGGHGLAGGIAGAEASGNSSRMKSYA
GFDPRSIKIFWEQHDQTDVELSQDVCARLAEDASYKVWELINNVKIYSRH
SGGVVTYDLVNEVLKDADVPPMLGAMDSDWDRIDYDGSFYFHSDKIFELS
AEFQKEVNLCTPDDADFQSICPVEDKHMDQLRQCVQSLVTAALFADSKSQ
TAAVCHAFQTPLMGSIYRVIVSKMVQLLAFKQQDHLSQRCWRLLRACNYN
ATANHNACRPEYFNLAEVLVSQLMAPYETIKAPHVDPDPGQTTSIKMEFE
EELKVEPDQCHNPETQENPEVMGVEKQEQEPQMFPGESTMEHTIYKLQSE
EEELNPQPEAEHLSSYFACPVGNGLVDELCETIGQLASQSGYLHAECLFL
IKRRLARFFEGRHVSSERDFRYISRAVRGLIALGEYAFREFIPYIYKLRV
EEIPDSLWPDLAPAAIFLGGHDDVYLYEWLEYGCGAALQPFLVHYARAYE
KMVTRRYVKAKQPAYRIESVPGVRRLEWSTLAAAMCHGDDPSKALKPKPT
LCEAFPDLQSPNLQLNCAGNIRFKFAGCRPVLLKPKVATVPHSEDSPSSA
ANGGGGGGASSDILIAKRKLFKPLTNVRKWSPISGYHYLRI*

SD14859.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
Saf6-PB 714 CG3883-PB 1..714 28..741 3752 100 Plus
Saf6-PA 717 CG3883-PA 1..717 28..741 3738 99.6 Plus