Clone SD14923 Report

Search the DGRC for SD14923

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:149
Well:23
Vector:pOT2
Associated Gene/Transcriptkune-RA
Protein status:SD14923.pep: gold
Sequenced Size:1051

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1298 2002-01-01 Sim4 clustering to Release 2

Clone Sequence Records

SD14923.complete Sequence

1051 bp assembled on 2011-07-20

GenBank Submission: BT128775.1

> SD14923.complete
ATTTTCCAAGCCGACTTGTTAACGAAATTTTTATAGAAATAACAAATGGG
TGCGTCCAACCGCATTTTACAAGTTGCCCTTTGCGCGTCCGTGTTTTCCC
TAATATGTTTTGTTATCGCGTTTTCCACGCCTTATTGGCTGGTTACAGAC
GGCAGATTACAAAACCCGCGATTCACTAACCTAGGCCTTTGGGAAGTTTG
TTTCAACAACTTCCAGGACATACACCGATTTTTTGACAATTCCTTTAACG
GATGCCTATGGGTTTTCGAAGAGGAATATTACATCATACACGACTTCCTC
CTGCCTGGCTTCTACATATCCGTTCAACTTTTTGCTACGCTATGCTTTGT
AATGTGCCTTGTTGTTATACCACTCACTGTAGCATTTCTTCGCACTTCTC
GCGATGATGACAGGTACATGGTGCTCCTGCTGGCGATAGGATCATGCCAG
GTTGTGGGCTCTGTTTTCGGGTTTATTGCTGTGGTCATTTTTGGCGCCAA
AGGAGATTCTCGGGATTGGATGCCAGGATGGCAGAACAATGATATGGGCT
GGTCATTTGCTCTGGGCGTTGTTGGCGCTGTGCTGCTACTGCCGTCTGGC
GTACTCTATCTAGTAGAAGCGCGTCGGGAAAGGTACAAGCGCTTAAACGA
AATCAGCAATCGGGAGATCAGTGAATACGGAGATGAGTATTACCAGAATC
AGGGACCCTCCGCAGTGCTTCCGACCGCTCCATCGCCATATCAATCCTAT
TTTGCATCTGAGCCAAGCCGACCAAGAAGACCCCAACAAAGTAGTGCATC
GAATTCCGCTGTACAAGGAGGAATTCAAACAGATATATAAATCAAAAATG
AATTCGAAGGAATTATCCGTCCATTTACACAATATTTAATAATAATTAAC
AAATATACAAATATATACGATGTAAGGTAGAATAGTCATTCCACTAAATC
CACTACAAATGTTTTTAAAATGTATCGAATTCGAAGGTAATAAATATTTG
TCAAATAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A

SD14923.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 10:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 1559168..1560178 1..1011 5055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 10:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5671790..5672801 1..1012 5060 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 5672989..5674000 1..1012 5060 100 Plus
Unimproved_211000022211112_70_584 514 Unimproved_211000022211112_70_584 267..309 1000..1042 200 97.6 Plus
Blast to na_te.dros performed 2019-03-15 10:47:17
Subject Length Description Subject Range Query Range Score Percent Strand
Tc1-2 1644 Tc1-2 TC1-2 1644bp 341..461 833..953 118 60.8 Plus
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 837..870 916..881 112 83.3 Minus

SD14923.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 10:48:11 Download gff for SD14923.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 1559168..1560178 1..1011 96   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-07-20 13:40:51 Download gff for SD14923.complete
Subject Subject Range Query Range Percent Splice Strand
kune-RA 1..795 46..840 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:25:32 Download gff for SD14923.complete
Subject Subject Range Query Range Percent Splice Strand
kune-RA 1..795 46..840 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:12:16 Download gff for SD14923.complete
Subject Subject Range Query Range Percent Splice Strand
kune-RA 1..795 46..840 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-07-20 13:40:51 Download gff for SD14923.complete
Subject Subject Range Query Range Percent Splice Strand
kune-RA 19..1026 1..1008 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:25:32 Download gff for SD14923.complete
Subject Subject Range Query Range Percent Splice Strand
kune-RA 50..1060 1..1011 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:16 Download gff for SD14923.complete
Subject Subject Range Query Range Percent Splice Strand
kune-RA 50..1060 1..1011 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:48:11 Download gff for SD14923.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5671790..5672800 1..1011 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:48:11 Download gff for SD14923.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5671790..5672800 1..1011 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 10:48:11 Download gff for SD14923.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5671790..5672800 1..1011 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:25:32 Download gff for SD14923.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1559295..1560305 1..1011 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:09:24 Download gff for SD14923.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5672989..5673999 1..1011 100   Plus

SD14923.hyp Sequence

Translation from 45 to 839

> SD14923.hyp
MGASNRILQVALCASVFSLICFVIAFSTPYWLVTDGRLQNPRFTNLGLWE
VCFNNFQDIHRFFDNSFNGCLWVFEEEYYIIHDFLLPGFYISVQLFATLC
FVMCLVVIPLTVAFLRTSRDDDRYMVLLLAIGSCQVVGSVFGFIAVVIFG
AKGDSRDWMPGWQNNDMGWSFALGVVGAVLLLPSGVLYLVEARRERYKRL
NEISNREISEYGDEYYQNQGPSAVLPTAPSPYQSYFASEPSRPRRPQQSS
ASNSAVQGGIQTDI*

SD14923.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
kune-PA 264 CG1298-PA 1..264 1..264 1399 100 Plus
sinu-PA 247 CG10624-PA 44..233 16..200 312 38.9 Plus
pck-PC 256 CG14779-PC 39..238 18..212 264 33 Plus
pck-PA 256 CG14779-PA 39..238 18..212 264 33 Plus

SD14923.pep Sequence

Translation from 45 to 839

> SD14923.pep
MGASNRILQVALCASVFSLICFVIAFSTPYWLVTDGRLQNPRFTNLGLWE
VCFNNFQDIHRFFDNSFNGCLWVFEEEYYIIHDFLLPGFYISVQLFATLC
FVMCLVVIPLTVAFLRTSRDDDRYMVLLLAIGSCQVVGSVFGFIAVVIFG
AKGDSRDWMPGWQNNDMGWSFALGVVGAVLLLPSGVLYLVEARRERYKRL
NEISNREISEYGDEYYQNQGPSAVLPTAPSPYQSYFASEPSRPRRPQQSS
ASNSAVQGGIQTDI*

SD14923.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14554-PA 267 GF14554-PA 1..267 1..264 1047 78.3 Plus
Dana\GF10459-PA 243 GF10459-PA 40..230 16..201 329 41.2 Plus
Dana\GF16839-PA 255 GF16839-PA 24..237 3..212 264 32.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23175-PA 162 GG23175-PA 1..162 103..264 756 94.4 Plus
Dere\GG14127-PA 247 GG14127-PA 44..234 16..201 308 39.2 Plus
Dere\GG12859-PA 256 GG12859-PA 39..238 18..212 277 33.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20456-PA 278 GH20456-PA 1..278 1..264 992 69.7 Plus
Dgri\GH16247-PA 243 GH16247-PA 52..230 28..201 300 39.6 Plus
Dgri\GH24501-PA 256 GH24501-PA 39..238 18..212 269 33 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
kune-PA 264 CG1298-PA 1..264 1..264 1399 100 Plus
sinu-PA 247 CG10624-PA 44..233 16..200 312 38.9 Plus
pck-PC 256 CG14779-PC 39..238 18..212 264 33 Plus
pck-PA 256 CG14779-PA 39..238 18..212 264 33 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18881-PA 267 GI18881-PA 1..267 1..264 1061 75.7 Plus
Dmoj\GI13182-PA 243 GI13182-PA 52..230 28..201 291 39 Plus
Dmoj\GI16044-PA 256 GI16044-PA 39..238 18..212 276 34 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11055-PA 261 GL11055-PA 1..261 1..264 1175 81.4 Plus
Dper\GL12049-PA 247 GL12049-PA 56..234 28..201 294 39.6 Plus
Dper\GL14258-PA 256 GL14258-PA 39..238 18..212 262 32 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11952-PA 264 GA11952-PA 1..264 1..264 1202 82.2 Plus
Dpse\GA10446-PA 247 GA10446-PA 56..234 28..201 294 39.6 Plus
Dpse\GA13238-PA 256 GA13238-PA 39..238 18..212 262 32 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16516-PA 264 GM16516-PA 1..264 1..264 1355 96.6 Plus
Dsec\GM13914-PA 247 GM13914-PA 44..234 16..201 306 39.2 Plus
Dsec\GM19143-PA 256 GM19143-PA 39..238 18..212 269 33 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10381-PA 143 GD10381-PA 7..143 128..264 691 96.4 Plus
Dsim\GD13191-PA 245 GD13191-PA 42..232 16..201 307 39.2 Plus
Dsim\GD24716-PA 154 GD24716-PA 39..130 18..110 175 35.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21915-PA 262 GJ21915-PA 1..262 1..264 1098 78 Plus
Dvir\GJ11958-PA 243 GJ11958-PA 52..230 28..201 287 39 Plus
Dvir\GJ15556-PA 256 GJ15556-PA 39..238 18..212 274 33.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10757-PA 269 GK10757-PA 1..219 1..219 1006 81.7 Plus
Dwil\GK17307-PA 219 GK17307-PA 28..206 28..201 288 39 Plus
Dwil\GK16082-PA 256 GK16082-PA 39..238 18..212 274 34.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:11:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20527-PA 264 GE20527-PA 1..264 1..264 1326 93.9 Plus
Dyak\GE20553-PA 247 GE20553-PA 44..234 16..201 307 38.7 Plus
Dyak\GE16690-PA 256 GE16690-PA 39..238 18..212 271 33.5 Plus