Clone SD15476 Report

Search the DGRC for SD15476

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:154
Well:76
Vector:pOT2
Associated Gene/TranscriptCG1092-RB
Protein status:SD15476.pep: full length peptide match
Preliminary Size:1473
Sequenced Size:1333

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1092 2003-12-02 Blastp of sequenced clone
CG1092 2008-04-29 Release 5.5 accounting
CG1092 2008-08-15 Release 5.9 accounting
CG1092 2008-12-18 5.12 accounting

Clone Sequence Records

SD15476.complete Sequence

1333 bp (1333 high quality bases) assembled on 2003-12-02

GenBank Submission: BT011012

> SD15476.complete
CGATGACAACCTCAAGTCTTGCAATCGGCGCATCCGTAGCGCTTATTCTG
TTGATGTTGACTGGTTCAGGGCATTGCCAAGTGGGATACGTGCGGCACCT
GTCGGAGCTGCGGATAAGGGAACTTGAAAAATTGTCGGTTCGTATACAGG
GCTCCATCAACACCGAAAAGTATGCCTGCGAGAGCTATTTCGACTACGTC
TGTAGCCGCAATCGACCCCTCTTTTCGATCATGGGTAAGTGAGGAAAGCC
TGTGTTGGGGGAGTGCCTAATGCATATACCCTATCCAAGGACACATGCCG
CAAATGGGCGATCTTATGCAGTTGCTGACCGAGCTGCAGAACGATCCAGA
GCCATTCGAGGCTAAGCAGAAGACGCTGGACTTCTTCATCTCCTGCAACG
TGCACCACGCGCTGGAAGACTGCTATCGTGAGACCTATGAGTATTTCAAG
CCACTTTTCGGGTATATAGTTACAAAAAACATGCTCAATGGAGAATCCCA
CGAGCTGGATGACTTTCTGGGCATTTTGGACCGCTTCGTCGTCAGGTTTC
AGAAGGACAGAGAGTCGAATCCCATTCTCAGCAAGCTGGCCACGTATAAG
CAGAAATTTAAAACGCCGCGAGTCTACTTCCATGCTAGAGACCTGAGCCG
GGAGTACAAGGACCTGCGGATCTACCGGGAGAGCTACGAACACAACGTTC
GCAATCTGGAGCAGCACAGAAAACTGAATTCAACATACGAATTGGGGGTT
CAGCGCACCATGCTGGATTGGAGCATGTACCTCTTTCAGAGCCGCAACAA
GCCCATGTCCTACTTCTACTCCACGTTTACGGTCCATTTGTACATGATGC
TTTTTAATAGTCTGGAGCGTCAGCGTGATTTCACGCGGTTTCGCGAAGAT
GTGGAGTGTTTAAGGCTGCCGCAGTTCGTTAATGTTCTGGATGAGGCCAG
AATGCTGGCTGTGATCTACTTAAAGAGCTTCCGAGCGGCCTGGATAGACT
ACAGCGCCTGGATCAACTCGCCTCCACAGAACAGTGGGATATACGATCAG
GAAAATGGCGTCCTTCAAAAGTACCATCTTGACAACAAGCGTATATTTTT
TACTCTTTACGCTCAGAACTTCTGTGAGTTTGGGAAGGATCTGGCCGAGC
ATGTCTTCTATCTGGGCCTTAAACAGAACAAGGACTTTTACGACATATAC
TCTTGTGGATTCCAAACGGAAAACCCTATGACTTGTGTTTAAAAGATCAA
GACCATTTCTACCATATATTTAGTTTACGAGATACAATAAAAGCAATAAC
ATTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA

SD15476.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-RB 1312 CG1092-RB 1..1311 1..1311 6540 99.9 Plus
CG1092.b 1608 CG1092.b 253..1275 289..1311 5100 99.9 Plus
CG1092.a 1816 CG1092.a 461..1483 289..1311 5100 99.9 Plus
CG1092.b 1608 CG1092.b 20..254 1..235 1175 100 Plus
CG1092.a 1816 CG1092.a 228..462 1..235 1175 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 92693..93998 1..1306 6530 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:55:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4266972..4268282 1..1311 6540 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4007803..4009113 1..1311 6540 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 23:59:30 has no hits.

SD15476.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:00:47 Download gff for SD15476.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 92693..93998 1..1306 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:08:20 Download gff for SD15476.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 1..174 54..227 100 == Plus
CG1092-RA 175..1134 283..1242 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:44:18 Download gff for SD15476.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 175..1134 283..1242 99   Plus
CG1092-RA 1..174 54..227 100 == Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:27:32 Download gff for SD15476.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 1..225 3..227 100 == Plus
CG1092-RC 226..1185 283..1242 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:34:07 Download gff for SD15476.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RA 1..174 54..227 100 == Plus
CG1092-RA 175..1134 283..1242 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:06:46 Download gff for SD15476.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 1..225 3..227 100 == Plus
CG1092-RC 226..1185 283..1242 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:54:51 Download gff for SD15476.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RB 1..1306 1..1306 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:44:18 Download gff for SD15476.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RB 1..1306 1..1306 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:27:32 Download gff for SD15476.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 203..429 1..227 100 == Plus
CG1092-RC 430..1453 283..1306 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:34:08 Download gff for SD15476.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RB 1..1306 1..1306 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:46 Download gff for SD15476.complete
Subject Subject Range Query Range Percent Splice Strand
CG1092-RC 203..429 1..227 100 == Plus
CG1092-RC 430..1453 283..1306 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:00:47 Download gff for SD15476.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4266972..4268277 1..1306 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:00:47 Download gff for SD15476.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4266972..4268277 1..1306 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:00:47 Download gff for SD15476.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4266972..4268277 1..1306 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:27:32 Download gff for SD15476.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 92694..93999 1..1306 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:05:46 Download gff for SD15476.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4007803..4009108 1..1306 100   Plus

SD15476.hyp Sequence

Translation from 294 to 1241

> SD15476.hyp
MPQMGDLMQLLTELQNDPEPFEAKQKTLDFFISCNVHHALEDCYRETYEY
FKPLFGYIVTKNMLNGESHELDDFLGILDRFVVRFQKDRESNPILSKLAT
YKQKFKTPRVYFHARDLSREYKDLRIYRESYEHNVRNLEQHRKLNSTYEL
GVQRTMLDWSMYLFQSRNKPMSYFYSTFTVHLYMMLFNSLERQRDFTRFR
EDVECLRLPQFVNVLDEARMLAVIYLKSFRAAWIDYSAWINSPPQNSGIY
DQENGVLQKYHLDNKRIFFTLYAQNFCEFGKDLAEHVFYLGLKQNKDFYD
IYSCGFQTENPMTCV*

SD15476.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-PD 394 CG1092-PD 80..394 1..315 1695 100 Plus
CG1092-PC 394 CG1092-PC 80..394 1..315 1695 100 Plus

SD15476.pep Sequence

Translation from 294 to 1241

> SD15476.pep
MPQMGDLMQLLTELQNDPEPFEAKQKTLDFFISCNVHHALEDCYRETYEY
FKPLFGYIVTKNMLNGESHELDDFLGILDRFVVRFQKDRESNPILSKLAT
YKQKFKTPRVYFHARDLSREYKDLRIYRESYEHNVRNLEQHRKLNSTYEL
GVQRTMLDWSMYLFQSRNKPMSYFYSTFTVHLYMMLFNSLERQRDFTRFR
EDVECLRLPQFVNVLDEARMLAVIYLKSFRAAWIDYSAWINSPPQNSGIY
DQENGVLQKYHLDNKRIFFTLYAQNFCEFGKDLAEHVFYLGLKQNKDFYD
IYSCGFQTENPMTCV*

SD15476.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18200-PA 392 GF18200-PA 78..392 1..315 1413 81 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12252-PA 394 GG12252-PA 80..394 1..315 1621 94.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19089-PA 391 GH19089-PA 75..391 1..315 1203 69.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1092-PD 394 CG1092-PD 80..394 1..315 1695 100 Plus
CG1092-PC 394 CG1092-PC 80..394 1..315 1695 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10851-PA 390 GI10851-PA 74..390 1..315 1182 68.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12312-PA 391 GL12312-PA 78..391 1..315 1251 74.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:42:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10643-PA 391 GA10643-PA 78..391 1..315 1258 74.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10741-PA 394 GM10741-PA 80..394 1..315 1683 98.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:42:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19713-PA 394 GD19713-PA 80..394 1..315 1679 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14458-PA 390 GJ14458-PA 74..390 1..315 1190 67.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25402-PA 394 GE25402-PA 80..394 1..315 1586 91.7 Plus