Clone SD15934 Report

Search the DGRC for SD15934

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:159
Well:34
Vector:pOT2
Associated Gene/TranscriptCG9987-RA
Protein status:SD15934.pep: gold
Preliminary Size:1635
Sequenced Size:1742

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9987 2002-01-01 Sim4 clustering to Release 2
CG9987 2002-05-18 Blastp of sequenced clone
CG9987 2003-01-01 Sim4 clustering to Release 3
CG9987 2008-04-29 Release 5.5 accounting
CG9987 2008-08-15 Release 5.9 accounting
CG9987 2008-12-18 5.12 accounting

Clone Sequence Records

SD15934.complete Sequence

1742 bp (1742 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119213

> SD15934.complete
ATTTTGTGCCGGCATGCAATTCAGAAATAAAAAACTGGTGAAATAGCTCA
TAAATATAAATAGCTTAAGAAGCGATTGGCTGGCAAAGAGAACGACCGGA
GAGTCAGGATGGTGGTGCGTCCGTACAACGATGAGCTCCGGTACCTGGAG
AAAGTGAGCGACCACTGCTGGCGCATCAAGAAGGGCTTCCAGCCAAATAT
GAATGTGGAGGGGTGTTTCTATGTGAACAGCCGGCTGGAGCGCCTGATGC
TGGAGGAGCTGAAGAACTCCTGTCGCCCGGGCGCAGTGGGTGGCTTCCTG
CCTGGCGTCAAGCAGATAGCCAATGTGGCCGCGTTGCCGGGCATCGTGGG
CAGGTCCATTGGACTGCCCGACATTCATTCCGGCTACGGATTTGCCATCG
GGAACATGGCTGCTTTCGACATGAACGATCCGCTGTCCGTTGTAAGTCCC
GGCGGCGTGGGTTTCGACATCAACTGTGGCGTGCGTCTGCTGCGCACGAA
TCTGTACGAGAAGGATGTGCAGCCGGTGAAGGAGCAACTGGCGCAGTCCC
TGTTCGATCACATACCCGTGGGTGTGGGCTCCAAGGGCATCATACCCATG
AATGCCCGCGATCTGGAGGAGGCCCTCGAAATGGGCATGGACTGGTCGCT
GCGCGAGGGATACGTGTGGGCGGAGGACAAGGAGCATTGCGAGGAGTACG
GCCGCATGCTGAACGCCGATCCCGCCAAGGTGAGCATGCGGGCCAAGAAG
CGAGGGCTGCCCCAGCTGGGCACTCTGGGTGCGGGCAATCACTACGCCGA
GATCCAGGTGGTGGACGAAATCTACGACAAGTGGAGCGCCTCCAAGATGG
GCATCGAGGAGAAGGGCCAGGTGGTGGTGATGATTCACTCGGGCAGCCGT
GGCTTCGGCCACCAGGTCGCTACCGACGCCCTGGTCCAGATGGAGAAGGC
CATGAAGCGGGACAAGATCGAGACCAATGACCGGCAGCTGGCCTGCGCCA
GGATCAATTCGGTGGAGGGACAGGACTACTTGAAGGCCATGGCGGCGGCT
GCGAACTTTGCCTGGGTGAATCGCAGCTCCATGACATTCCTCACCCGTCA
AGCGTTTGCCAAGATGTTTAACACCACACCCGATGATCTCGACATGCACG
TTATCTATGACGTTTCGCACAATATTGCCAAGGTGGAGAACCACATGGTG
GACGGCAAGGAGCGGAAGCTGTTGGTTCACCGGAAGGGCTCCACGCGCGC
CTTCCCGCCACACCATCCCCTGATCCCAGTGGACTATCAGCTTACCGGGC
AGCCAGTCCTCGTCGGTGGAACCATGGGCACTTGCAGTTACGTGCTAACT
GGAACGGAGCAGGGCATGCAGGAGACGTTCGGTAGCACTTGCCACGGAGC
GGGTCGTGCACTATCTCGAGCCAAATCCCGGCGCAATCTGGACTACAAGG
ATGTGCTGGACAAGCTGGACCAGTTGGGCATCGCCATACGCGTGGCCTCG
CCCAAACTGGTCATGGAGGAGGCACCCGAATCTTACAAGGACGTGACCGA
TGTGGTCGACACCTGTCACGCAGCTGGCATCAGCAAAAAGTGCATCAAGA
TGCGCCCAATTGCAGTTATCAAGGGCTAAGTCTAATTTATTATTGTGATT
AAGTCAATAAACATTTGGTCCGATGGCTGTCAATTTAGTTAATAACGAAT
TAAAATTTTTATAGAATTTGTTAAAAAAAAAAAAAAAAAAAA

SD15934.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9987-RA 1769 CG9987-RA 41..1764 1..1724 8605 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:11:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19429222..19430623 1..1402 6995 99.9 Plus
chr2L 23010047 chr2L 19430682..19431003 1401..1722 1610 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:55:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19430663..19432064 1..1402 6995 99.9 Plus
2L 23513712 2L 19432123..19432446 1401..1724 1620 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19430663..19432064 1..1402 6995 99.9 Plus
2L 23513712 2L 19432123..19432446 1401..1724 1620 100 Plus
Blast to na_te.dros performed 2019-03-16 15:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 3663..3745 254..336 118 60.2 Plus

SD15934.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:12:27 Download gff for SD15934.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19429222..19430622 1..1401 99 -> Plus
chr2L 19430683..19431003 1402..1722 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:08:28 Download gff for SD15934.complete
Subject Subject Range Query Range Percent Splice Strand
CG9987-RA 1..1521 109..1629 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:40:47 Download gff for SD15934.complete
Subject Subject Range Query Range Percent Splice Strand
CG9987-RA 1..1521 109..1629 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:06:14 Download gff for SD15934.complete
Subject Subject Range Query Range Percent Splice Strand
CG9987-RA 1..1521 109..1629 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:32:42 Download gff for SD15934.complete
Subject Subject Range Query Range Percent Splice Strand
CG9987-RA 1..1521 109..1629 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:37:57 Download gff for SD15934.complete
Subject Subject Range Query Range Percent Splice Strand
CG9987-RA 1..1521 109..1629 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:14:32 Download gff for SD15934.complete
Subject Subject Range Query Range Percent Splice Strand
CG9987-RA 7..1728 1..1722 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:40:46 Download gff for SD15934.complete
Subject Subject Range Query Range Percent Splice Strand
CG9987-RA 7..1728 1..1722 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:06:14 Download gff for SD15934.complete
Subject Subject Range Query Range Percent Splice Strand
CG9987-RA 21..1742 1..1722 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:32:42 Download gff for SD15934.complete
Subject Subject Range Query Range Percent Splice Strand
CG9987-RA 7..1728 1..1722 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:57 Download gff for SD15934.complete
Subject Subject Range Query Range Percent Splice Strand
CG9987-RA 21..1742 1..1722 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:27 Download gff for SD15934.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19430663..19432063 1..1401 99 -> Plus
2L 19432124..19432444 1402..1722 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:27 Download gff for SD15934.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19430663..19432063 1..1401 99 -> Plus
2L 19432124..19432444 1402..1722 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:12:27 Download gff for SD15934.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19430663..19432063 1..1401 99 -> Plus
2L 19432124..19432444 1402..1722 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:06:14 Download gff for SD15934.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19430663..19432063 1..1401 99 -> Plus
arm_2L 19432124..19432444 1402..1722 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:05:08 Download gff for SD15934.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19430663..19432063 1..1401 99 -> Plus
2L 19432124..19432444 1402..1722 100   Plus

SD15934.pep Sequence

Translation from 108 to 1628

> SD15934.pep
MVVRPYNDELRYLEKVSDHCWRIKKGFQPNMNVEGCFYVNSRLERLMLEE
LKNSCRPGAVGGFLPGVKQIANVAALPGIVGRSIGLPDIHSGYGFAIGNM
AAFDMNDPLSVVSPGGVGFDINCGVRLLRTNLYEKDVQPVKEQLAQSLFD
HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRM
LNADPAKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIE
EKGQVVVMIHSGSRGFGHQVATDALVQMEKAMKRDKIETNDRQLACARIN
SVEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIY
DVSHNIAKVENHMVDGKERKLLVHRKGSTRAFPPHHPLIPVDYQLTGQPV
LVGGTMGTCSYVLTGTEQGMQETFGSTCHGAGRALSRAKSRRNLDYKDVL
DKLDQLGIAIRVASPKLVMEEAPESYKDVTDVVDTCHAAGISKKCIKMRP
IAVIKG*

SD15934.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14042-PA 506 GF14042-PA 1..506 1..506 2702 98.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21180-PA 506 GG21180-PA 1..506 1..506 2713 99 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13449-PA 506 GH13449-PA 1..506 1..506 2582 94.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:07
Subject Length Description Subject Range Query Range Score Percent Strand
RtcB-PA 506 CG9987-PA 1..506 1..506 2655 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14026-PA 506 GI14026-PA 1..506 1..506 2662 97.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21208-PA 506 GL21208-PA 1..506 1..506 2679 97.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22169-PA 506 GA22169-PA 1..506 1..506 2679 97.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17346-PA 506 GM17346-PA 1..506 1..506 2728 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24205-PA 506 GD24205-PA 1..506 1..506 2719 99.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18257-PA 506 GJ18257-PA 1..506 1..506 2663 96.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23837-PA 506 GK23837-PA 1..506 1..506 2677 97.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13253-PA 506 GE13253-PA 1..506 1..506 2716 99.2 Plus

SD15934.hyp Sequence

Translation from 108 to 1628

> SD15934.hyp
MVVRPYNDELRYLEKVSDHCWRIKKGFQPNMNVEGCFYVNSRLERLMLEE
LKNSCRPGAVGGFLPGVKQIANVAALPGIVGRSIGLPDIHSGYGFAIGNM
AAFDMNDPLSVVSPGGVGFDINCGVRLLRTNLYEKDVQPVKEQLAQSLFD
HIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRM
LNADPAKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIE
EKGQVVVMIHSGSRGFGHQVATDALVQMEKAMKRDKIETNDRQLACARIN
SVEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIY
DVSHNIAKVENHMVDGKERKLLVHRKGSTRAFPPHHPLIPVDYQLTGQPV
LVGGTMGTCSYVLTGTEQGMQETFGSTCHGAGRALSRAKSRRNLDYKDVL
DKLDQLGIAIRVASPKLVMEEAPESYKDVTDVVDTCHAAGISKKCIKMRP
IAVIKG*

SD15934.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9987-PA 506 CG9987-PA 1..506 1..506 2655 100 Plus