SD16005.complete Sequence
931 bp (931 high quality bases) assembled on 2002-05-18
GenBank Submission: AY119215
> SD16005.complete
CACTTCGCCTGCACGGATCGCGCATGAATATTCTGCCCAGCAATCTGGCC
AAGTGACCAAGCCAATTTCGGGAGCAGGGGCCTGGGGCCAGTGTCATATG
CCCGACACTCGGTGCAGCGAAATGTAAAATACCCATCTAAACTACCGATA
AAGGTAACCATGAGAGATTGGATGAAAACGAGTGCCATTAGCCCTCTAAC
GAAATATAAAAACTAAAAACCATCTAAACCATAAGCGAGGAAAAGGGGTG
CGAATATCTCCCAACCGATATACCCAGCGTGCCTCTGGGCACTGTCACTG
TCATTTGCGTCGCAGCGCTGCCGCCGTCCGCGTCCGCGTCGCTTTGCCTG
GCCCAGTGTTTCCGCTTTCTTTCGCCTCGTTGTAATGTTACTTTTAGTTT
GATGTCGGAGCCTCGACGAGCCGGTCGTAAGCGAAATCGTAAGCGAGACT
TTAGTGCGATTCCGCTCCGTTCCGCCGGTTGTGTGTGCGTGTTTAGTTCG
AGCTGAGGCGAAGCAGAAGCAGAATCGGAATCAGAATCCAGCGGAATCGA
GAATCAAAATCGAAACCGAAAGTGGTTCTCCGCGTGTGCGAGCTAGTGTG
TGTGTGTGTGTACGTGTTGTGTTTGGGCCCGCTTTTCTGCTTTTCTACCC
CCGAAAAAGCAAAGCACAGCATAAAACTGTGCGCTCGTAAGCGCGTACGT
GTGTCTATGTGCCTCTGTGTGAGTGCTAGTGTATGAGTGCGACCAGGGGA
AAGGAGGCAAAGAAAAGAAAACCAACCCCCACCAGCGACGGCGGAGAACA
GGAAAACAACAACAGAAGGCACACAACCAGCGCACCACCACCATCATTAC
CATTACCGCCACCACCCACCACAACACTTCGTCATCGTTTCGCGTTGTGC
AGAAAATAATTACAAAAAAAAAAAAAAAAAA
SD16005.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(3)neo38.g | 4980 | l(3)neo38.g | 170..1097 | 1..928 | 4550 | 99.3 | Plus |
l(3)neo38.q | 6517 | l(3)neo38.q | 170..1097 | 1..928 | 4550 | 99.3 | Plus |
l(3)neo38.m | 3123 | l(3)neo38.m | 170..1097 | 1..928 | 4550 | 99.3 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:18:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 7603338..7604127 | 913..124 | 3935 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 7604484..7604610 | 127..1 | 620 | 99.2 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:56:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11777817..11778621 | 928..124 | 3950 | 99.4 | Minus |
3R | 32079331 | 3R | 11778978..11779104 | 127..1 | 620 | 99.2 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 11518648..11519452 | 928..124 | 3950 | 99.3 | Minus |
3R | 31820162 | 3R | 11519809..11519935 | 127..1 | 620 | 99.2 | Minus |
Blast to na_te.dros performed 2019-03-16 20:18:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy9 | 5349 | gypsy9 GYPSY9 5349bp | 614..684 | 198..267 | 118 | 64.8 | Plus |
SD16005.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:20:07 Download gff for
SD16005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 7603338..7604127 | 124..913 | 95 | <- | Minus |
chr3R | 7604488..7604610 | 1..123 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 18:32:44 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:14:35 Download gff for
SD16005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RB | 1..913 | 1..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:40:50 Download gff for
SD16005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RB | 1..913 | 1..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:00:15 Download gff for
SD16005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RB | 25..937 | 1..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:32:44 Download gff for
SD16005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RB | 1..913 | 1..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:05 Download gff for
SD16005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(3)neo38-RB | 25..937 | 1..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:07 Download gff for
SD16005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11777832..11778621 | 124..913 | 99 | <- | Minus |
3R | 11778982..11779104 | 1..123 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:07 Download gff for
SD16005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11777832..11778621 | 124..913 | 99 | <- | Minus |
3R | 11778982..11779104 | 1..123 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:07 Download gff for
SD16005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11777832..11778621 | 124..913 | 99 | <- | Minus |
3R | 11778982..11779104 | 1..123 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:00:15 Download gff for
SD16005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7603554..7604343 | 124..913 | 99 | <- | Minus |
arm_3R | 7604704..7604826 | 1..123 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:00:15 Download gff for
SD16005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7603554..7604343 | 124..913 | 99 | <- | Minus |
arm_3R | 7604704..7604826 | 1..123 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:05:12 Download gff for
SD16005.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11518663..11519452 | 124..913 | 99 | <- | Minus |
3R | 11519813..11519935 | 1..123 | 99 | | Minus |
SD16005.pep Sequence
Translation from 732 to 908
> SD16005.pep
MSATRGKEAKKRKPTPTSDGGEQENNNRRHTTSAPPPSLPLPPPPTTTLR
HRFALCRK*
SD16005.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG17194-PA | 60 | GG17194-PA | 1..60 | 1..58 | 159 | 83.3 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:21:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM26072-PA | 58 | GM26072-PA | 1..58 | 1..58 | 285 | 98.3 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:21:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD20636-PA | 58 | GD20636-PA | 1..58 | 1..58 | 285 | 98.3 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE10086-PA | 58 | GE10086-PA | 1..58 | 1..58 | 281 | 96.6 | Plus |
SD16005.hyp Sequence
Translation from 732 to 908
> SD16005.hyp
MSATRGKEAKKRKPTPTSDGGEQENNNRRHTTSAPPPSLPLPPPPTTTLR
HRFALCRK*
Sequence SD16005.hyp has no blast hits.