Clone SD16010 Report

Search the DGRC for SD16010

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:160
Well:10
Vector:pOT2
Associated Gene/Transcriptpirk-RA
Protein status:SD16010.pep: gold
Preliminary Size:594
Sequenced Size:1321

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15678 2002-01-01 Sim4 clustering to Release 2
CG15678 2002-05-18 Blastp of sequenced clone
CG15678 2003-01-01 Sim4 clustering to Release 3
CG15678 2008-04-29 Release 5.5 accounting
CG15678 2008-08-15 Release 5.9 accounting
CG15678 2008-12-18 5.12 accounting

Clone Sequence Records

SD16010.complete Sequence

1321 bp (1321 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119217

> SD16010.complete
AGCGAGCGAGCAGTAAGCACGGCGAAAGCGATACCAGAGATCGCCAAACT
CAACGCACAATAAAAGTTCAGAAAACAGAGGGAGTTCCCCTGGCGGAAGC
AGACGATCCCCCAGCGCTGAATTGAATACAAAATCAACACACACAATTGG
ATATCTTTGACCTTAGCCATCCGGATTGCTCATCATTCGGAGTCTTCCCC
CAGCGACAGAGACGGAAATAGAGATAGGAAAAAGAGTTGGAGAATGAGCT
AACCGACAGACTGGACGGTGATTTTTACGAGTGATTAGCAGCGGAAAGAA
ACGATACCGGCGGTAATTCACACCAAAATGGGCGTTCGTGTGATAGAAAC
CGATTCGGCGAGCGATTCGTATGACGATGACGAGTGCTCCACTTGCCAGA
AAGAGCACGAGCAGGGTAAATCCCCCAATAAGAGCAAGAAAAGTTCCACG
CCGCCGGAGACAACCATCTACGCCAGCAAGGATCTGGTGGGCAACTGCAA
GGAGTACCGCATTGAGAACAACACGCGCGATCTCAGGATCATCGGCAATG
GCAACCGCATACGTATTGTGAACAACTCCGGGCAACTGCAAGTAATCGGC
AATAGCACCCGACTCAAGATTCAGAACAATAGCGGAGCCCTCAAGTACAC
GGGTAACGACGGTAGGATCTACCTGGGCAGCAGCTCCACGCAGCAGGTGG
TCGACTACACGGGCTGCAATGGACTGCTCAAGGTGGTCAAGTCCCTGGAT
CTTAGCGGCGATGCCAAGAAAAGGCCCAGCTCTCGATCGAAAAACGCCAA
GCCAACGCCAACGGATGCTGGCCAAGGCAAGTCCGGCGGCATTGAGATCG
ACAGCAATCTAACGATACGGCACGGAGCCGGGAACATTGTGATCAAGAAT
GCCATCAACGTGAGCATCTGAGAATCTTGAGCTCTCTAAGTCATCTTTGG
CCAAAGATTAAGGATTAATGTAACGAAACTCTTGCCACCGAACGCAAAGG
TTCCTATTGACTGCAAAATAGTCACTTAGTCTTAATGTGTCTTTCGACTG
CTACCAATATTAACATCACCCTGCACATTCAGCAATGTCAAGTATTAAAC
GCCACGTCGCTAGTCTAAAAATCCATTACTATTCACAAAACACACCCACT
GATTAGGGAAATATATGTATTGTATGTATATGTTTAGTCGTAACGCAGTA
GCACAGTGTGAACAAAGCCTAAACTTCATTCCGAGAATGAATAATCTGAT
TAAAAAATACAACTATATGTCTAAATATAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

SD16010.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
pirk-RA 1278 pirk-RA 1..1278 1..1278 6270 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 17547414..17548687 1278..5 6130 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:56:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21660966..21662244 1279..1 6275 99.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 21662165..21663443 1279..1 6275 99.3 Minus
Blast to na_te.dros performed on 2019-03-16 18:57:38 has no hits.

SD16010.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:58:35 Download gff for SD16010.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 17547414..17548690 1..1278 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:08:33 Download gff for SD16010.complete
Subject Subject Range Query Range Percent Splice Strand
CG15678-RA 1..594 328..921 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:40:53 Download gff for SD16010.complete
Subject Subject Range Query Range Percent Splice Strand
pirk-RA 1..594 328..921 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:29:40 Download gff for SD16010.complete
Subject Subject Range Query Range Percent Splice Strand
pirk-RA 1..594 328..921 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:32:47 Download gff for SD16010.complete
Subject Subject Range Query Range Percent Splice Strand
CG15678-RA 1..594 328..921 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:31 Download gff for SD16010.complete
Subject Subject Range Query Range Percent Splice Strand
pirk-RA 1..594 328..921 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:14:39 Download gff for SD16010.complete
Subject Subject Range Query Range Percent Splice Strand
CG15678-RA 1..1278 1..1278 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:40:53 Download gff for SD16010.complete
Subject Subject Range Query Range Percent Splice Strand
pirk-RA 1..1278 1..1278 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:40 Download gff for SD16010.complete
Subject Subject Range Query Range Percent Splice Strand
pirk-RA 24..1301 1..1278 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:32:47 Download gff for SD16010.complete
Subject Subject Range Query Range Percent Splice Strand
CG15678-RA 1..1278 1..1278 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:56:31 Download gff for SD16010.complete
Subject Subject Range Query Range Percent Splice Strand
pirk-RA 24..1301 1..1278 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:58:35 Download gff for SD16010.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21660967..21662244 1..1278 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:58:35 Download gff for SD16010.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21660967..21662244 1..1278 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:58:35 Download gff for SD16010.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21660967..21662244 1..1278 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:40 Download gff for SD16010.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17548472..17549749 1..1278 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:05:15 Download gff for SD16010.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21662166..21663443 1..1278 99   Minus

SD16010.pep Sequence

Translation from 327 to 920

> SD16010.pep
MGVRVIETDSASDSYDDDECSTCQKEHEQGKSPNKSKKSSTPPETTIYAS
KDLVGNCKEYRIENNTRDLRIIGNGNRIRIVNNSGQLQVIGNSTRLKIQN
NSGALKYTGNDGRIYLGSSSTQQVVDYTGCNGLLKVVKSLDLSGDAKKRP
SSRSKNAKPTPTDAGQGKSGGIEIDSNLTIRHGAGNIVIKNAINVSI*

SD16010.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11631-PA 201 GF11631-PA 1..201 1..197 634 75.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20757-PA 195 GG20757-PA 1..195 1..197 799 84.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23040-PA 196 GH23040-PA 1..196 1..197 558 62.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
pirk-PB 197 CG15678-PB 1..197 1..197 1012 100 Plus
pirk-PA 197 CG15678-PA 1..197 1..197 1012 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21109-PA 196 GI21109-PA 1..196 1..197 505 58.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11274-PA 199 GL11274-PA 1..199 1..197 598 72.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13889-PA 199 GA13889-PA 1..199 1..197 598 72.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15701-PA 197 GM15701-PA 1..197 1..197 912 95.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25179-PA 199 GD25179-PA 1..199 1..197 839 92 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20957-PA 193 GJ20957-PA 1..193 1..197 584 68.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19575-PA 200 GK19575-PA 1..200 1..197 541 58.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13689-PA 197 GE13689-PA 1..197 1..197 838 87.8 Plus

SD16010.hyp Sequence

Translation from 327 to 920

> SD16010.hyp
MGVRVIETDSASDSYDDDECSTCQKEHEQGKSPNKSKKSSTPPETTIYAS
KDLVGNCKEYRIENNTRDLRIIGNGNRIRIVNNSGQLQVIGNSTRLKIQN
NSGALKYTGNDGRIYLGSSSTQQVVDYTGCNGLLKVVKSLDLSGDAKKRP
SSRSKNAKPTPTDAGQGKSGGIEIDSNLTIRHGAGNIVIKNAINVSI*

SD16010.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
pirk-PB 197 CG15678-PB 1..197 1..197 1012 100 Plus
pirk-PA 197 CG15678-PA 1..197 1..197 1012 100 Plus