Clone SD16302 Report

Search the DGRC for SD16302

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:163
Well:2
Vector:pOT2
Associated Gene/TranscriptCsat-RA
Protein status:SD16302.pep: gold
Preliminary Size:1282
Sequenced Size:2061

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2675 2002-01-01 Sim4 clustering to Release 2
CG2675 2002-12-11 Blastp of sequenced clone
CG2675 2003-01-01 Sim4 clustering to Release 3
Csat 2008-04-29 Release 5.5 accounting
Csat 2008-08-15 Release 5.9 accounting
Csat 2008-12-18 5.12 accounting

Clone Sequence Records

SD16302.complete Sequence

2061 bp (2061 high quality bases) assembled on 2002-12-11

GenBank Submission: BT003169

> SD16302.complete
AAAAGCCGCCGCTGGCAGAAGCTTCTGGCTCTGATTGTTGTTTACGTGTC
GCCCGGTCCGGTGGAGTCGTCTTCATTTGCGCTCTTCTGCTTTTCTGGCC
AACTTGAAGGGAACGAACTGTGGAACGGAACGGCCCGCCGACAACTGATC
TTGGCCAGGAACGGAGTCTTTGTGTACCCCCAACTACGGCGTTTTGTTTG
CCTTCGGTTTCTATTTGGTTTTGGAGTTGAGACAATAGAGCTAGAAGCGT
AGCACCATGAATAGCATACACATGAACGCCAATACGCTGAAGTACATCAG
CCTGCTGACGCTGACCCTGCAGAATGCCATCCTGGGCCTCAGCATGCGCT
ACGCCCGCACCCGGCCAGGCGACATCTTCCTCAGCTCCACGGCCGTACTC
ATGGCAGAGTTCGCCAAACTGATCACGTGCCTGTTCCTGGTCTTCAACGA
GGAGGGCAAGGATGCCCAGAAGTTTGTACGCTCGCTGCACAAGACCATCA
TTGCGAATCCCATGGACACGCTGAAGGTGTGTGTCCCCTCGCTGGTCTAT
ATCGTTCAGAACAATCTGCTGTACGTCTCTGCGTCCCATTTGGATGCGGC
CACCTACCAGGTGACGTACCAGCTGAAGATTCTCACCACGGCCATGTTCG
CGGTTGTCATTCTGCGCCGCAAGCTGCTGAACACGCAGTGGGGTGCGCTG
CTGCTCCTGGTGATGGGCATCGTCCTGGTGCAGTTGGCCCAAACGGAGGG
TCCGACGAGTGGCTCAGCCGGTGGTGCCGCAGCTGCAGCCACGGCCGCCT
CCTCTGGCGGTGCTCCCGAGCAGAACAGGATGCTCGGACTGTGGGCCGCA
CTGGGCGCCTGCTTCCTCTCCGGATTCGCGGGCATCTACTTTGAGAAGAT
CCTCAAGGGTGCCGAGATCTCCGTGTGGATGAGGAATGTGCAGTTGAGTC
TGCTCAGCATTCCCTTCGGCCTGCTCACCTGTTTCGTTAACGACGGCAGT
AGGATCTTCGACCAGGGATTCTTCAAGGGCTACGATCTGTTTGTCTGGTA
CCTGGTCCTGCTGCAGGCCGGCGGTGGATTGATCGTTGCCGTGGTGGTCA
AGTACGCGGATAACATTCTCAAGGGCTTCGCCACCTCGCTGGCCATCATC
ATCTCGTGCGTGGCCTCCATATACATCTTCGACTTCAATCTCACGCTGCA
GTTCAGCTTCGGAGCTGGCCTGGTCATCGCCTCCATCTTTCTCTACGGCT
ACGATCCGGCCAGGTCGGCGCCGAAGCCAACTATGCACGGTCCTGGCGGC
GATGAGGAGAAGCTACTGCCGCGCGTCTAGCTCTGGAGGAATCCGGATCT
GCCAACAGTATTTGTCCGTAACCCGGAGGCCGCCGTTCGGTAATTGCTCT
GGTGTATCCGGTGCATCCGGTGTCCTTGATATTCCCCACGTTTTGTGTGT
ATATATATTAGGGTGGATATTAACGTCTGGACAATTCGTAGCACTTTCTG
TTGAGACGATAATTGTAATGTAAAGCAGCGATAAGAATACTTAATGATTT
ATGTAATTTAAATGTATTTAGGGTATTCACTAGCGAAACTAAAATGTAGT
TAATGAAATGATGCAGCTTGAATGCACGTTTTATTGATCATTTTAATTGT
TACTTTGCGAATGCTGAGGAATGCCAGCAGTATTTACTGGACAACACCAC
ACATACCGTGCCTATCCTTTTGTAAATATCCACTTGCACTCAAGTTTAGA
CTAAGATTTGTAACGATTTATAGTTTTCAAGTTACACTTGATGTTCGGCC
AATTCACAGCCACAACTACTTTTGTTCGAATTTTTTTTTTAGATCATATA
TATGTATATATATTTACTTGAATGTGCATTATTTATTCATCGCCAATTAC
TTTATTTTTGAGAAATCCTAGGTTGAGCCAGCCCACACTTATATATTTGT
ATTTGAACTAAAGTCGCATTACTCGCACAGTGTTTTAAGAGTGATTCCAT
ATCGATATGTTTCATTTCCTTTGAATAAATATTAGACGAATAAAAAAAAA
AAAAAAAAAAA

SD16302.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Csat-RA 2136 Csat-RA 77..2124 1..2045 9930 99 Plus
Csat-RB 1839 Csat-RB 61..1836 273..2045 8645 99.2 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:40:37
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2594940..2596592 2041..392 8020 99.2 Minus
chrX 22417052 chrX 2597321..2597592 272..1 1285 98.2 Minus
chrX 22417052 chrX 2597104..2597223 392..273 600 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:56:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:40:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2701120..2702776 2045..392 8040 99.2 Minus
X 23542271 X 2703505..2703776 272..1 1285 98.2 Minus
X 23542271 X 2703288..2703407 392..273 600 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2709218..2710874 2045..392 8050 99.1 Minus
X 23527363 X 2711603..2711874 272..1 1285 98.1 Minus
X 23527363 X 2711386..2711505 392..273 600 100 Minus
Blast to na_te.dros performed 2019-03-16 08:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy6 7826 gypsy6 GYPSY6 7826bp 923..1002 1862..1940 118 62.5 Plus

SD16302.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:41:47 Download gff for SD16302.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2594940..2596591 393..2041 99 <- Minus
chrX 2597104..2597223 273..392 100 <- Minus
chrX 2597321..2597592 1..272 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:08:36 Download gff for SD16302.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 1..1074 257..1330 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:58:41 Download gff for SD16302.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 1..1074 257..1330 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:52:19 Download gff for SD16302.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 1..1074 257..1330 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:49:26 Download gff for SD16302.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 1..1074 257..1330 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:45:41 Download gff for SD16302.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 1..1074 257..1330 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:15:20 Download gff for SD16302.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 1..2044 1..2041 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:58:41 Download gff for SD16302.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 1..2044 1..2041 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:19 Download gff for SD16302.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 1..2013 32..2041 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:49:26 Download gff for SD16302.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 1..2044 1..2041 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:45:41 Download gff for SD16302.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RC 77..2120 1..2041 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:41:47 Download gff for SD16302.complete
Subject Subject Range Query Range Percent Splice Strand
X 2701124..2702775 393..2041 99 <- Minus
X 2703288..2703407 273..392 100 <- Minus
X 2703505..2703776 1..272 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:41:47 Download gff for SD16302.complete
Subject Subject Range Query Range Percent Splice Strand
X 2701124..2702775 393..2041 99 <- Minus
X 2703288..2703407 273..392 100 <- Minus
X 2703505..2703776 1..272 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:41:47 Download gff for SD16302.complete
Subject Subject Range Query Range Percent Splice Strand
X 2701124..2702775 393..2041 99 <- Minus
X 2703288..2703407 273..392 100 <- Minus
X 2703505..2703776 1..272 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:19 Download gff for SD16302.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2597321..2597440 273..392 100 <- Minus
arm_X 2597538..2597809 1..272 98   Minus
arm_X 2595157..2596808 393..2041 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:20:56 Download gff for SD16302.complete
Subject Subject Range Query Range Percent Splice Strand
X 2711386..2711505 273..392 100 <- Minus
X 2711603..2711874 1..272 98   Minus
X 2709222..2710873 393..2041 99 <- Minus

SD16302.pep Sequence

Translation from 256 to 1329

> SD16302.pep
MNSIHMNANTLKYISLLTLTLQNAILGLSMRYARTRPGDIFLSSTAVLMA
EFAKLITCLFLVFNEEGKDAQKFVRSLHKTIIANPMDTLKVCVPSLVYIV
QNNLLYVSASHLDAATYQVTYQLKILTTAMFAVVILRRKLLNTQWGALLL
LVMGIVLVQLAQTEGPTSGSAGGAAAAATAASSGGAPEQNRMLGLWAALG
ACFLSGFAGIYFEKILKGAEISVWMRNVQLSLLSIPFGLLTCFVNDGSRI
FDQGFFKGYDLFVWYLVLLQAGGGLIVAVVVKYADNILKGFATSLAIIIS
CVASIYIFDFNLTLQFSFGAGLVIASIFLYGYDPARSAPKPTMHGPGGDE
EKLLPRV*

SD16302.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22488-PA 381 GF22488-PA 30..381 6..357 1570 88.7 Plus
Dana\GF15719-PA 385 GF15719-PA 48..375 45..356 223 25.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18613-PA 357 GG18613-PA 1..357 1..357 1823 97.5 Plus
Dere\GG25047-PA 387 GG25047-PA 48..377 45..356 229 25.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11945-PA 358 GH11945-PA 8..358 6..357 1506 86.8 Plus
Dgri\GH11488-PA 395 GH11488-PA 47..349 45..334 222 24.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
Ugalt-PC 357 CG2675-PC 1..357 1..357 1799 100 Plus
Ugalt-PA 357 CG2675-PA 1..357 1..357 1799 100 Plus
Ugalt-PB 368 CG2675-PB 17..368 6..357 1768 99.7 Plus
senju-PA 388 CG14040-PA 48..349 45..334 229 25.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14732-PA 362 GI14732-PA 2..362 3..357 1467 86.1 Plus
Dmoj\GI16983-PA 392 GI16983-PA 48..347 45..334 209 25.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19812-PA 360 GL19812-PA 2..360 3..357 1601 87.5 Plus
Dper\GL26549-PA 388 GL26549-PA 48..346 45..334 210 27 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15422-PA 367 GA15422-PA 12..367 6..357 1582 87.4 Plus
Dpse\GA12720-PA 392 GA12720-PA 48..350 45..334 215 26.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18861-PA 357 GM18861-PA 1..357 1..357 1844 98.9 Plus
Dsec\GM18522-PA 388 GM18522-PA 48..378 45..356 219 24.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16360-PA 357 GD16360-PA 1..357 1..357 1857 99.4 Plus
Dsim\GD23318-PA 2092 GD23318-PA 1752..2053 45..334 232 26.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19143-PA 358 GJ19143-PA 2..358 3..357 1477 88 Plus
Dvir\GJ17230-PA 392 GJ17230-PA 48..381 45..356 242 26.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20060-PA 383 GK20060-PA 19..383 6..357 1502 84.4 Plus
Dwil\GK23880-PA 381 GK23880-PA 51..370 45..354 210 25.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16928-PA 416 GE16928-PA 1..416 1..357 1726 83.2 Plus
Dyak\GE11322-PA 387 GE11322-PA 48..377 45..356 230 25.7 Plus

SD16302.hyp Sequence

Translation from 256 to 1329

> SD16302.hyp
MNSIHMNANTLKYISLLTLTLQNAILGLSMRYARTRPGDIFLSSTAVLMA
EFAKLITCLFLVFNEEGKDAQKFVRSLHKTIIANPMDTLKVCVPSLVYIV
QNNLLYVSASHLDAATYQVTYQLKILTTAMFAVVILRRKLLNTQWGALLL
LVMGIVLVQLAQTEGPTSGSAGGAAAAATAASSGGAPEQNRMLGLWAALG
ACFLSGFAGIYFEKILKGAEISVWMRNVQLSLLSIPFGLLTCFVNDGSRI
FDQGFFKGYDLFVWYLVLLQAGGGLIVAVVVKYADNILKGFATSLAIIIS
CVASIYIFDFNLTLQFSFGAGLVIASIFLYGYDPARSAPKPTMHGPGGDE
EKLLPRV*

SD16302.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:54:05
Subject Length Description Subject Range Query Range Score Percent Strand
Csat-PC 357 CG2675-PC 1..357 1..357 1799 100 Plus
Csat-PA 357 CG2675-PA 1..357 1..357 1799 100 Plus
Csat-PB 368 CG2675-PB 17..368 6..357 1768 99.7 Plus
CG14040-PA 388 CG14040-PA 48..349 45..334 229 25.9 Plus