Clone SD16942 Report

Search the DGRC for SD16942

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:169
Well:42
Vector:pOT2
Associated Gene/TranscriptBEAF-32-RA
Protein status:SD16942.pep: gold
Sequenced Size:1166

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
BEAF-32-RA 2009-06-15 Manual selection by Joe Carlson

Clone Sequence Records

SD16942.complete Sequence

1166 bp assembled on 2009-10-19

GenBank Submission: BT100127.1

> SD16942.complete
TGTAATTTGGGTTTGTTTTCTTCTTGGCAAACCGAATTACCACCGCAAAT
CGAACAACCGATACACCACGATGCATGTTGAAAAGAAATCAGAGCTTCGT
AGCCTACTAAAATCCGGGGACAAGCGTTGCAAACTCGTTGAGCCCAGGAA
CACCAAAAGCTGCGTCTGGAGGTTTTTCAATCTCGTCCAGTGCGACGACC
ACATAGAGCCGTACGCCTGCTGCAAAACCTGTGGCGATCTGTTATCCTAC
AGCGGCAAAACTGGAACCGGATCCCTGCTACGGCACCGATGTCTCCACTC
CAGCAGCAGTAACGACAAAACCGTGCGGATTACCAAGGCCAAGACGCTGA
GGGAGCCGCTGCGTGTGGCCAAGCCGAAGATCGAGTCGAACGTCGCCAAT
TATCTGGGCGAGGCGGGCGCCCTGCCGCAAAAGTGGGAGGAGTACGAGCA
GAACGATGAGATTAGCGAGGACATTAAGGACATCATATACAGCGAGGATC
CACTGTGCTATAGTCCTATACACGTGATGGATGATGAGGGCCTGGATCAG
CCTGAGAAGCAAGTGACCGTGCTAACCCATTCGACTTCACCAGCCGGTGG
AAGTAGCAGGCCCATCGGTGTTGGTTCGGGCGTACAGGCTACTGTGGTGG
CCTCCACGTCCTCCAGCAGCAGCTCGGCCAAGCAGCTGAAGAACAACCTG
GAGACGTCCATCGAACGGCTGACCGCTGTCAGCGAACAGCTCAGCTACAT
CATACAACAGAATCACGAGGAGCTCACCAAGGACGACGACTACTATTTTG
CACTTAGCTTGGTGCCCGCAATGCGCCACCTTTCGCTCAGTCGGAAGATG
TACGTGCGGTCCAAGATCCAGGATATACTGTTCAAGGAAAGTGAGGACTC
AACGCTTGCCAAGGATGAGTAGGCGGTCCATTATATACATTTACCCAGAG
GAATAATAAAACGAGGAACGAAGGAAACCATATGGTAAATGGGCAAATCA
GCGTGTCGTAATCTAGGTTAATAATTATACATATGTTATGTATTCATTTA
AATTATGCTCTTTTATCGATTGAAAATACTTACTTTGATTGTATATTTCC
CAATTATATTTTACTTAAAACTCAAATAAAGCACTACAATAAATTAAAAA
AAAAAAAAAAAAAAAA

SD16942.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:55:32
Subject Length Description Subject Range Query Range Score Percent Strand
BEAF-32-RA 1241 BEAF-32-RA 83..1229 1..1147 5735 100 Plus
BEAF-32.a 1561 BEAF-32.a 717..1550 314..1147 4170 100 Plus
BEAF-32.b 1331 BEAF-32.b 487..1320 314..1147 4170 100 Plus
BEAF-32.a 1561 BEAF-32.a 83..396 1..314 1570 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10659093..10659924 314..1145 4160 100 Plus
chr2R 21145070 chr2R 10657814..10658127 1..314 1495 98.4 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:56:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14771799..14772632 314..1147 4170 100 Plus
2R 25286936 2R 14770516..14770829 1..314 1570 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14772998..14773831 314..1147 4170 100 Plus
2R 25260384 2R 14771715..14772028 1..314 1570 100 Plus
Blast to na_te.dros performed 2019-03-16 05:01:52
Subject Length Description Subject Range Query Range Score Percent Strand
blood 7410 blood BLOOD 7410bp 6853..6960 1020..1131 117 61.1 Plus

SD16942.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:02:53 Download gff for SD16942.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10657814..10658127 1..314 98 -> Plus
chr2R 10659094..10659924 315..1145 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 17:58:46 Download gff for SD16942.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RA 1..852 71..922 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:45:51 Download gff for SD16942.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RA 1..852 71..922 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:11:55 Download gff for SD16942.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RA 1..852 71..922 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:53:28 Download gff for SD16942.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RA 1..852 71..922 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-19 15:53:23 Download gff for SD16942.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RA 47..1191 1..1145 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:45:51 Download gff for SD16942.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RA 47..1191 1..1145 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:11:55 Download gff for SD16942.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RA 48..1192 1..1145 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:53:28 Download gff for SD16942.complete
Subject Subject Range Query Range Percent Splice Strand
BEAF-32-RA 48..1192 1..1145 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:02:53 Download gff for SD16942.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14770516..14770829 1..314 100 -> Plus
2R 14771800..14772630 315..1145 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:02:53 Download gff for SD16942.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14770516..14770829 1..314 100 -> Plus
2R 14771800..14772630 315..1145 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:02:53 Download gff for SD16942.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14770516..14770829 1..314 100 -> Plus
2R 14771800..14772630 315..1145 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:11:55 Download gff for SD16942.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10658021..10658334 1..314 100 -> Plus
arm_2R 10659305..10660135 315..1145 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:26:06 Download gff for SD16942.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14771715..14772028 1..314 100 -> Plus
2R 14772999..14773829 315..1145 100   Plus

SD16942.hyp Sequence

Translation from 0 to 921

> SD16942.hyp
VIWVCFLLGKPNYHRKSNNRYTTMHVEKKSELRSLLKSGDKRCKLVEPRN
TKSCVWRFFNLVQCDDHIEPYACCKTCGDLLSYSGKTGTGSLLRHRCLHS
SSSNDKTVRITKAKTLREPLRVAKPKIESNVANYLGEAGALPQKWEEYEQ
NDEISEDIKDIIYSEDPLCYSPIHVMDDEGLDQPEKQVTVLTHSTSPAGG
SSRPIGVGSGVQATVVASTSSSSSSAKQLKNNLETSIERLTAVSEQLSYI
IQQNHEELTKDDDYYFALSLVPAMRHLSLSRKMYVRSKIQDILFKESEDS
TLAKDE*

SD16942.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
BEAF-32-PA 283 CG10159-PA 1..283 24..306 1460 100 Plus
BEAF-32-PC 282 CG10159-PC 2..282 48..306 1034 76.2 Plus
BEAF-32-PB 282 CG10159-PB 2..282 48..306 1034 76.2 Plus

SD16942.pep Sequence

Translation from 1 to 921

> SD16942.pep
VIWVCFLLGKPNYHRKSNNRYTTMHVEKKSELRSLLKSGDKRCKLVEPRN
TKSCVWRFFNLVQCDDHIEPYACCKTCGDLLSYSGKTGTGSLLRHRCLHS
SSSNDKTVRITKAKTLREPLRVAKPKIESNVANYLGEAGALPQKWEEYEQ
NDEISEDIKDIIYSEDPLCYSPIHVMDDEGLDQPEKQVTVLTHSTSPAGG
SSRPIGVGSGVQATVVASTSSSSSSAKQLKNNLETSIERLTAVSEQLSYI
IQQNHEELTKDDDYYFALSLVPAMRHLSLSRKMYVRSKIQDILFKESEDS
TLAKDE*

SD16942.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 19:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13135-PA 355 GF13135-PA 1..355 24..306 888 54.8 Plus
Dana\GF20137-PA 632 GF20137-PA 3..71 29..97 171 44.3 Plus
Dana\GF19648-PA 147 GF19648-PA 3..71 29..97 162 42.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 19:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20480-PA 283 GG20480-PA 1..283 24..306 1387 94.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 19:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21415-PA 266 GH21415-PA 2..262 48..301 594 49.6 Plus
Dgri\GH21414-PA 81 GH21414-PA 1..79 24..102 404 92.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
BEAF-32-PA 283 CG10159-PA 1..283 24..306 1460 100 Plus
BEAF-32-PC 282 CG10159-PC 2..282 48..306 1034 76.2 Plus
BEAF-32-PB 282 CG10159-PB 2..282 48..306 1034 76.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 19:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18590-PA 265 GI18590-PA 2..260 48..300 579 49.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 19:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11437-PA 278 GL11437-PA 1..278 24..306 1133 75.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 19:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10120-PA 278 GA10120-PA 1..278 24..306 1127 75.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 19:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21570-PA 283 GM21570-PA 1..283 24..306 1475 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 19:45:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11076-PA 283 GD11076-PA 1..283 24..306 1477 98.2 Plus
Dsim\GD15413-PA 246 GD15413-PA 45..246 105..306 1037 98 Plus
Dsim\GD22318-PA 219 GD22318-PA 1..129 24..154 463 69.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 19:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20389-PA 341 GJ20389-PA 1..336 24..300 772 52 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 19:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22912-PA 278 GK22912-PA 2..278 48..306 554 49.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 19:45:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13610-PA 284 GE13610-PA 1..284 24..306 1368 94.4 Plus