Clone SD17025 Report

Search the DGRC for SD17025

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:170
Well:25
Vector:pOT2
Associated Gene/TranscriptCG7632-RA
Protein status:SD17025.pep: gold
Preliminary Size:993
Sequenced Size:1465

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7632 2002-01-01 Sim4 clustering to Release 2
CG7632 2002-06-13 Blastp of sequenced clone
CG7632 2003-01-01 Sim4 clustering to Release 3
CG7632 2008-04-29 Release 5.5 accounting
CG7632 2008-08-15 Release 5.9 accounting
Pc 2008-08-15 Release 5.9 accounting
CG7632 2008-12-18 5.12 accounting
Pc 2008-12-18 5.12 accounting

Clone Sequence Records

SD17025.complete Sequence

1465 bp (1465 high quality bases) assembled on 2002-06-13

GenBank Submission: AY122265

> SD17025.complete
CAGCCGCCAGCGAATGACAAGATTAAAAACCTTGCTGAAACATAGTTTTC
TCAGATATTACGTATCAAGATCAAAGTTCACCTGGCATCGCCGCCGACCA
TCCATGTGTGGTGAAATCAAAGCCAGAACATCAGTATCATTCTATTGATC
GAGGAAGAAGAACGTGACATTACTCAGAGGAAGTAGAAAATATCTTACCT
TGAAATGAAGGTGTCCAGAGGTCTGTTCCTGCTAAAACAGTTGCCAAATG
TAAGAAACTCCAGCAGTGGGCCCACAAAGCCTTTCAAAATCCTCAACAAA
CATTTCGATGAAATCAGCATACCAGTTCCATGGGGTCACATCTCGGGCAA
ATGGTATGGACCGAAGCACGTACGACCCATTGTTGGCATGCATGGCTGGC
AGGATAATGCCGGTACCTTCGATACTTTGGCTCCTCTCCTGCCGTCCCAC
CTCTCTTTCCTAAGCATCGATGCACCAGGACATGGGTTGTCCTCCTGGCT
GCCACCTGGCACTTCCTACCACTCCATTGACCTCGTGCTGATCACTCGCC
GACTAATGGAGGAGTACAACTGGGACAAGATCTCTATATTGGCCCACTCG
ATGAGCTCCATCAATGGCTTTGTGTTCAGTGCTCTGTTTCCTGACAAAGT
TGATCTGTTCGTGGGTCTGGATGTGCTGAAGCCGCCAGTTCGAAGTGCTC
GCGGCATTGTGGATTCGCTTACCGAGCGAATTGAGTCCGCACTGAAGCTG
GAACGACGTCTGAAGAGTGGGTCTGAGCCGCCTGCCTATGACTGGGATCA
GTTGGTAACCCGGCTGCACGAGGGCTCAAATAAGTCCGTCTCAATTGATG
CCTGCAAGTATCTGCTGCAGCGGAACTGCAAACCATCGACGCACGAGCCT
CACAAGTATTACTTCTCCCGCGACAACCGACTGAAGTCATCACTATTTTA
CACGTTGCACCAGGAGGTGCCAATGGAGATGGCGCGCAGAATTAAGTGCC
CGCATCTCTTTATCAAGGCCCTGCAGGCTCCCTACTACGAACGCAAGGAG
TACTTCGATGAAGTGTTAGCGGAGCTGCAGAAGAATCCTCTGTTCGAATA
CCACGAGGTTGAAGGAACTCACCATGTCCACCTTAACGAGCCAGAGAAGG
TGGCGCCTATCATCAACTCCTTCATCAATAGGTACCGGCCTTTATGAGAC
CGCCTTAACATAGACCTCGACATATAGACCCGTGTACAAACTAGCGGATT
CGTGTACCTTACTCCTAATGTTTAATTTAACCCAACGCAGATTGATGATA
TTTACTGGATATTATATGAAAATTAATCTCAGTTGTAGACAATACCTAAA
CATTGGAAAATTGGTTGCTTCTATTTAATTTATTATGTACAATCAATACC
GGCAATAACATTAATGTTAAACACTATATTAAAAAGCTTAAAATATAAAA
AAAAAAAAAAAAAAA

SD17025.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7632-RA 1533 CG7632-RA 107..1533 1..1427 7120 99.9 Plus
CG7632.a 1400 CG7632.a 275..1400 302..1427 5630 100 Plus
CG7632.a 1400 CG7632.a 28..276 1..249 1245 100 Plus
Pc-RA 2586 Pc-RA 2501..2586 1447..1361 395 98.8 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 21294087..21295210 304..1427 5620 100 Plus
chr3L 24539361 chr3L 21293725..21294027 1..303 1500 99.7 Plus
chr3L 24539361 chr3L 21292438..21292548 423..313 210 79.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:56:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:42:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21305079..21306202 304..1427 5620 100 Plus
3L 28110227 3L 21304717..21305019 1..303 1500 99.7 Plus
3L 28110227 3L 21303430..21303540 423..313 210 79.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 21298179..21299302 304..1427 5620 100 Plus
3L 28103327 3L 21297817..21298119 1..303 1500 99.6 Plus
3L 28103327 3L 21296530..21296640 423..313 210 79.2 Minus
Blast to na_te.dros performed on 2019-03-16 08:42:31 has no hits.

SD17025.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:43:31 Download gff for SD17025.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 21293725..21294027 1..303 99 -> Plus
chr3L 21294087..21295206 304..1423 100 <- Plus
chr3L 21304314..21304335 1424..1446 95   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:11:57 Download gff for SD17025.complete
Subject Subject Range Query Range Percent Splice Strand
CG7632-RA 1..993 205..1197 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:21:01 Download gff for SD17025.complete
Subject Subject Range Query Range Percent Splice Strand
CG7632-RA 1..993 205..1197 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:52:49 Download gff for SD17025.complete
Subject Subject Range Query Range Percent Splice Strand
CG7632-RA 1..993 205..1197 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:11:54 Download gff for SD17025.complete
Subject Subject Range Query Range Percent Splice Strand
CG7632-RA 1..993 205..1197 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:47:09 Download gff for SD17025.complete
Subject Subject Range Query Range Percent Splice Strand
CG7632-RA 1..993 205..1197 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:11:56 Download gff for SD17025.complete
Subject Subject Range Query Range Percent Splice Strand
CG7632-RA 1..1423 1..1423 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:21:01 Download gff for SD17025.complete
Subject Subject Range Query Range Percent Splice Strand
CG7632-RA 1..1423 1..1423 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:49 Download gff for SD17025.complete
Subject Subject Range Query Range Percent Splice Strand
CG7632-RA 21..1443 1..1423 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:11:54 Download gff for SD17025.complete
Subject Subject Range Query Range Percent Splice Strand
CG7632-RA 1..1423 1..1423 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:47:09 Download gff for SD17025.complete
Subject Subject Range Query Range Percent Splice Strand
CG7632-RA 21..1442 1..1422 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:43:31 Download gff for SD17025.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21304717..21305019 1..303 99 -> Plus
3L 21305079..21306198 304..1423 100 <- Plus
3L 21315306..21315327 1424..1446 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:43:31 Download gff for SD17025.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21304717..21305019 1..303 99 -> Plus
3L 21305079..21306198 304..1423 100 <- Plus
3L 21315306..21315327 1424..1446 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:43:31 Download gff for SD17025.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21304717..21305019 1..303 99 -> Plus
3L 21305079..21306198 304..1423 100 <- Plus
3L 21315306..21315327 1424..1446 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:49 Download gff for SD17025.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21297817..21298119 1..303 99 -> Plus
arm_3L 21298179..21299298 304..1423 100 <- Plus
arm_3L 21308406..21308427 1424..1446 95   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:44:28 Download gff for SD17025.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21297817..21298119 1..303 99 -> Plus
3L 21298179..21299298 304..1423 100 <- Plus
3L 21308406..21308427 1424..1446 95   Plus

SD17025.pep Sequence

Translation from 204 to 1196

> SD17025.pep
MKVSRGLFLLKQLPNVRNSSSGPTKPFKILNKHFDEISIPVPWGHISGKW
YGPKHVRPIVGMHGWQDNAGTFDTLAPLLPSHLSFLSIDAPGHGLSSWLP
PGTSYHSIDLVLITRRLMEEYNWDKISILAHSMSSINGFVFSALFPDKVD
LFVGLDVLKPPVRSARGIVDSLTERIESALKLERRLKSGSEPPAYDWDQL
VTRLHEGSNKSVSIDACKYLLQRNCKPSTHEPHKYYFSRDNRLKSSLFYT
LHQEVPMEMARRIKCPHLFIKALQAPYYERKEYFDEVLAELQKNPLFEYH
EVEGTHHVHLNEPEKVAPIINSFINRYRPL*

SD17025.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:42:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10275-PA 330 GF10275-PA 1..330 1..330 1554 86.7 Plus
Dana\GF24201-PA 348 GF24201-PA 27..330 19..329 865 50.5 Plus
Dana\GF24930-PA 362 GF24930-PA 21..316 36..329 677 45.2 Plus
Dana\GF24932-PA 342 GF24932-PA 7..305 32..329 606 43.3 Plus
Dana\GF24933-PA 344 GF24933-PA 10..308 35..329 576 42.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16172-PA 330 GG16172-PA 1..330 1..330 1693 95.8 Plus
Dere\GG13244-PA 349 GG13244-PA 28..331 19..329 866 50.8 Plus
Dere\GG14529-PA 357 GG14529-PA 3..316 18..329 638 43.6 Plus
Dere\GG14531-PA 335 GG14531-PA 9..303 34..329 614 44.5 Plus
Dere\GG14530-PA 314 GG14530-PA 14..308 35..329 602 43 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:42:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16159-PA 359 GH16159-PA 44..341 32..329 864 51 Plus
Dgri\GH16485-PA 353 GH16485-PA 22..317 36..329 661 43 Plus
Dgri\GH16488-PA 343 GH16488-PA 9..305 34..329 619 43 Plus
Dgri\GH23210-PA 318 GH23210-PA 9..305 34..329 558 38.7 Plus
Dgri\GH16489-PA 318 GH16489-PA 9..305 34..329 558 38.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7632-PA 330 CG7632-PA 1..330 1..330 1766 100 Plus
CG7632-PB 312 CG7632-PB 1..312 1..330 1642 94.5 Plus
CG11309-PA 358 CG11309-PA 27..340 19..329 864 50.6 Plus
CG11309-PF 348 CG11309-PF 27..330 19..329 859 50.8 Plus
CG11309-PE 348 CG11309-PE 27..330 19..329 859 50.8 Plus
CG11309-PD 348 CG11309-PD 27..330 19..329 859 50.8 Plus
CG11309-PC 348 CG11309-PC 27..330 19..329 859 50.8 Plus
CG11309-PB 348 CG11309-PB 27..330 19..329 859 50.8 Plus
CG5707-PA 357 CG5707-PA 3..316 18..329 685 43.3 Plus
CG5707-PC 361 CG5707-PC 20..320 31..329 683 44.8 Plus
CG5707-PB 361 CG5707-PB 20..320 31..329 683 44.8 Plus
CG5704-PB 335 CG5704-PB 9..303 34..329 613 44.2 Plus
CG5704-PA 335 CG5704-PA 9..303 34..329 613 44.2 Plus
CG15879-PA 342 CG15879-PA 6..304 34..329 603 41.9 Plus
CG15820-PA 308 CG15820-PA 7..302 34..329 597 42.9 Plus
kraken-PB 331 CG3943-PB 29..328 25..324 518 35.7 Plus
kraken-PA 331 CG3943-PA 29..328 25..324 518 35.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12011-PA 336 GI12011-PA 33..336 27..330 1279 75 Plus
Dmoj\GI13311-PA 352 GI13311-PA 36..334 31..329 843 50.5 Plus
Dmoj\GI12158-PA 395 GI12158-PA 60..355 36..329 669 43.5 Plus
Dmoj\GI12160-PA 342 GI12160-PA 9..305 34..329 604 42.3 Plus
Dmoj\GI12161-PA 343 GI12161-PA 8..305 33..329 564 40.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:42:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24680-PA 330 GL24680-PA 1..330 1..330 1507 82.1 Plus
Dper\GL24589-PA 348 GL24589-PA 31..330 23..329 870 51.5 Plus
Dper\GL24627-PA 331 GL24627-PA 9..305 34..329 634 46.3 Plus
Dper\GL24626-PA 348 GL24626-PA 9..308 34..329 607 44 Plus
Dper\GL19501-PA 186 GL19501-PA 1..183 140..324 255 33.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:42:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20494-PA 330 GA20494-PA 1..330 1..330 1514 82.4 Plus
Dpse\GA10906-PA 348 GA10906-PA 31..330 23..329 870 51.5 Plus
Dpse\GA19073-PA 365 GA19073-PA 28..323 36..329 683 45 Plus
Dpse\GA23368-PA 332 GA23368-PA 9..305 34..329 624 45.3 Plus
Dpse\GA23367-PA 348 GA23367-PA 9..308 34..329 616 44.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22356-PA 329 GM22356-PA 1..329 1..330 1708 97.6 Plus
Dsec\GM26924-PA 355 GM22149-PA 42..337 34..329 860 52 Plus
Dsec\GM14136-PA 308 GM14136-PA 6..302 33..329 604 43.4 Plus
Dsec\GM14139-PA 345 GM14139-PA 9..307 34..329 586 42.1 Plus
Dsec\GM14137-PA 323 GM14137-PA 3..312 25..329 545 38.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:42:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14950-PA 330 GD14950-PA 1..330 1..330 1732 98.5 Plus
Dsim\GD12125-PA 360 GD12125-PA 27..342 19..329 877 50.6 Plus
Dsim\GD13405-PA 357 GD13405-PA 21..316 36..329 636 45.2 Plus
Dsim\GD13406-PA 308 GD13406-PA 6..302 33..329 601 43.4 Plus
Dsim\GD13408-PA 335 GD13408-PA 9..303 34..329 597 44.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13282-PA 336 GJ13282-PA 1..336 1..330 1348 73.5 Plus
Dvir\GJ12081-PA 357 GJ12081-PA 42..339 32..329 841 50.3 Plus
Dvir\GJ13437-PA 357 GJ13437-PA 22..317 36..329 664 43.3 Plus
Dvir\GJ13440-PA 343 GJ13440-PA 9..305 34..329 632 43.5 Plus
Dvir\GJ11632-PA 343 GJ11632-PA 9..305 34..329 621 43 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20467-PA 335 GK20467-PA 1..335 1..330 1472 81.2 Plus
Dwil\GK20424-PA 352 GK20424-PA 35..333 31..329 837 49.8 Plus
Dwil\GK12598-PA 358 GK12598-PA 20..315 36..329 645 44.9 Plus
Dwil\GK12602-PA 346 GK12602-PA 9..306 34..329 586 42.7 Plus
Dwil\GK24439-PA 338 GK24439-PA 26..336 18..325 530 35.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19742-PA 330 GE19742-PA 1..330 1..330 1705 96.1 Plus
Dyak\GE23049-PA 330 GE23049-PA 1..330 1..330 1705 96.1 Plus
Dyak\GE22964-PA 348 GE22964-PA 27..330 19..329 868 51.1 Plus
Dyak\GE20878-PA 357 GE20878-PA 21..316 36..329 634 45.2 Plus
Dyak\GE20883-PA 335 GE20883-PA 9..303 34..329 613 45.5 Plus

SD17025.hyp Sequence

Translation from 204 to 1196

> SD17025.hyp
MKVSRGLFLLKQLPNVRNSSSGPTKPFKILNKHFDEISIPVPWGHISGKW
YGPKHVRPIVGMHGWQDNAGTFDTLAPLLPSHLSFLSIDAPGHGLSSWLP
PGTSYHSIDLVLITRRLMEEYNWDKISILAHSMSSINGFVFSALFPDKVD
LFVGLDVLKPPVRSARGIVDSLTERIESALKLERRLKSGSEPPAYDWDQL
VTRLHEGSNKSVSIDACKYLLQRNCKPSTHEPHKYYFSRDNRLKSSLFYT
LHQEVPMEMARRIKCPHLFIKALQAPYYERKEYFDEVLAELQKNPLFEYH
EVEGTHHVHLNEPEKVAPIINSFINRYRPL*

SD17025.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7632-PA 330 CG7632-PA 1..330 1..330 1766 100 Plus
CG7632-PB 312 CG7632-PB 1..312 1..330 1642 94.5 Plus
CG11309-PA 358 CG11309-PA 27..340 19..329 864 50.6 Plus
CG11309-PF 348 CG11309-PF 27..330 19..329 859 50.8 Plus
CG11309-PE 348 CG11309-PE 27..330 19..329 859 50.8 Plus