Clone SD17026 Report

Search the DGRC for SD17026

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:170
Well:26
Vector:pOT2
Associated Gene/Transcriptl(2)k01209-RA
Protein status:SD17026.pep: gold
Sequenced Size:1876

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
l(2)k01209-RA 2010-11-11 Gleaning Pick By Joe Carlson

Clone Sequence Records

SD17026.complete Sequence

1876 bp assembled on 2011-01-11

GenBank Submission: BT125900.1

> SD17026.complete
GCACGACGAAGTAAATCACCGCGTGTTTTTTTCTAATCGCTGCAACTGGC
TGCTGCAATCACTATTCTCTTGTCGAAATGTCTGTGACCCAGACGAAACA
AATCAAGTTCTACAACCCATCGAGTTCCGCTAGCTCCGACAGCGATGACC
GTTCACTCTCGGATGTCACAGAGCAACTCTATGTGGATCCGTATGCCGAC
CTAAGCAATGGCTTGCCCGGGGATCTCAACTGCTGTCCGGCCTCGCCCAC
CACAGTGCCTGCTAAAGCATCGTTGGATTCGCCTCTTAAACGTTCCGGTA
GGAGACAGCGAACCACATCCATTGGCAACCAGACCACCACAGCGAATCCG
TCCGAATGCATCATACGCGCAAATAACCGCACGATCTACACGGCCGGACG
ACCGCCGTGGTACAATTGTGCTGGGCAACAGGTGGAGCCCTTCGTCATAG
GAATCTGCGGCGGTAGTGCCTCTGGCAAGACCACAGTGGCTGAGAAAATC
ATCGAAAGCCTAGACGTTCCATGGGTAACACTGTTGTCCATGGACTGTTT
CTACAAGATCCTTAATGAGAAACAGCATGAGCAGGCCCTGATCAACGAAT
ATAACTTCGATCACCCGGATGCCTTCGACATCGAGCTGCTGCTGGACGTG
CTCACCAAGCTGAAGGAGGGCCGAAAGGTGGAAGTTCCTGTCTATAATTT
TGTGACACATGGTCGTGAGAGCCAAACGAAAACCATGTACGGGGCCAATG
TGATCATCTTCGAGGGTATTCTTACCTTTCATAGTCCTGAAGTACTTAAA
TTGCTAGACATGAAGATATTTGTGGACACAGATCCCGATATTCGTCTGGC
CAGGCGGTTAAGAAGGGACATCTCTCAGCGCGGACGAGACCTCAAGGGCG
TGCTGAAGCAATACCTTAATATGGTTAAGCCCTCCTATTGCAATTACATA
GCTCCAACAATGGCCCATGCAGATATCATTGTTCCTCGTGGAGGCGACAA
CAAGGTGGCCATCCATCTCATTGTTCAGCACGTGCACACACAGCTGCAAC
TGCGCGGATTTAAGCTGCGCGAAACTCTGGCCAACTCCTACAAGGACCAG
CCAATGCCACATTCTCTGCACTTGCTGCATCCCACGCCCCAAATAAAGGG
CCTGCACACGTTCATCCGTTGCCGAAATACGTCCCGCGATGAGTTTATTT
TTTACTCAAAGCGCCTGATACGGCTAGTCATTGAATATGCGCTAAGCTTA
TTTCCCTTTAAGAAAACAACAGTGGAGACTCCACAAGGTGTCCTTTACGA
GGGCAAGCGTATGGAATCGCGAAAAATATGCGGCGTCTCAATTCTCCGAG
CTGGTGAAACAATGGAACAAGCCGTTTGTGATGTGTGCAAGGACATTCGC
ATCGGAAAGATCCTCATCCAGACCAATCTTAAGACCGGCGAGCCGGAGCT
TTACTACCTGAGGCTGCCTAAAGACATAAAAGACTACAAGGTGATACTAA
TGGATGCCACCGTGGCCACAGGAGCAGCGGCCATGATGGCCATTCGGGTG
CTGCTGGATCACGATGTACCCGAGGACAACATTATCTTGGCCTCGCTTTT
GATGGCTGAGATCGGTGTGCACTCCATTGCCTATGCCTTCCCAAAGGTGA
AAATTGTTACTTCCGCTCTGGATCCGGAGATTAATAGTAAGTTTTATGTT
ATACCCGGCATTGGTAACTTTGGCGATCGCTACTTTGGCACGGAACCCTC
TGATGAGTACTAAGGAGATCTGGGCCAATCCATACCTATATGGAACCATC
AAGTTTCTAATGTATCTTAGGTTAAGTTCAAAACGTTACTTAAATTATGA
ATTTGGAAAAAAAAAAAAAAAAAAAA

SD17026.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13311882..13312480 1052..1650 2995 100 Plus
chr2R 21145070 chr2R 13310717..13311028 140..451 1560 100 Plus
chr2R 21145070 chr2R 13311260..13311570 556..866 1555 100 Plus
chr2R 21145070 chr2R 13312532..13312743 1645..1856 1060 100 Plus
chr2R 21145070 chr2R 13311635..13311823 864..1052 945 100 Plus
chr2R 21145070 chr2R 13307496..13307637 1..142 710 100 Plus
chr2R 21145070 chr2R 13311090..13311198 449..557 545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17424818..17425416 1052..1650 2995 100 Plus
2R 25286936 2R 17423653..17423964 140..451 1560 100 Plus
2R 25286936 2R 17424196..17424506 556..866 1555 100 Plus
2R 25286936 2R 17425468..17425681 1645..1858 1070 100 Plus
2R 25286936 2R 17424571..17424759 864..1052 945 100 Plus
2R 25286936 2R 17420432..17420573 1..142 710 100 Plus
2R 25286936 2R 17424026..17424134 449..557 545 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17426017..17426615 1052..1650 2995 100 Plus
2R 25260384 2R 17424852..17425163 140..451 1560 100 Plus
2R 25260384 2R 17425395..17425705 556..866 1555 100 Plus
2R 25260384 2R 17426667..17426880 1645..1858 1070 100 Plus
2R 25260384 2R 17425770..17425958 864..1052 945 100 Plus
2R 25260384 2R 17421631..17421772 1..142 710 100 Plus
2R 25260384 2R 17425225..17425333 449..557 545 100 Plus
Blast to na_te.dros performed on 2019-03-17 01:29:10 has no hits.

SD17026.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:29:56 Download gff for SD17026.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13307496..13307637 1..142 100 -> Plus
chr2R 13310720..13311027 143..450 100 -> Plus
chr2R 13311092..13311198 451..557 100 -> Plus
chr2R 13311262..13311569 558..865 100 -> Plus
chr2R 13311637..13311823 866..1052 100 -> Plus
chr2R 13311883..13312476 1053..1646 100 -> Plus
chr2R 13312534..13312743 1647..1856 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-01-11 10:26:24 Download gff for SD17026.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RA 1..1686 78..1763 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:40:29 Download gff for SD17026.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RA 1..1686 78..1763 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:59:37 Download gff for SD17026.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RA 1..1686 78..1763 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-11 10:26:24 Download gff for SD17026.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RD 1..140 2..141 100 -- Plus
l(2)k01209-RD 910..2625 142..1856 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:40:29 Download gff for SD17026.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RA 26..1881 1..1856 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:59:37 Download gff for SD17026.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)k01209-RA 26..1881 1..1856 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:29:56 Download gff for SD17026.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17424028..17424134 451..557 100 -> Plus
2R 17420432..17420573 1..142 100 -> Plus
2R 17423656..17423963 143..450 100 -> Plus
2R 17424198..17424505 558..865 100 -> Plus
2R 17424573..17424759 866..1052 100 -> Plus
2R 17424819..17425412 1053..1646 100 -> Plus
2R 17425470..17425679 1647..1856 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:29:56 Download gff for SD17026.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17424028..17424134 451..557 100 -> Plus
2R 17420432..17420573 1..142 100 -> Plus
2R 17423656..17423963 143..450 100 -> Plus
2R 17424198..17424505 558..865 100 -> Plus
2R 17424573..17424759 866..1052 100 -> Plus
2R 17424819..17425412 1053..1646 100 -> Plus
2R 17425470..17425679 1647..1856 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:29:56 Download gff for SD17026.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17424028..17424134 451..557 100 -> Plus
2R 17420432..17420573 1..142 100 -> Plus
2R 17423656..17423963 143..450 100 -> Plus
2R 17424198..17424505 558..865 100 -> Plus
2R 17424573..17424759 866..1052 100 -> Plus
2R 17424819..17425412 1053..1646 100 -> Plus
2R 17425470..17425679 1647..1856 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:40:29 Download gff for SD17026.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13311533..13311639 451..557 100 -> Plus
arm_2R 13307937..13308078 1..142 100 -> Plus
arm_2R 13311161..13311468 143..450 100 -> Plus
arm_2R 13311703..13312010 558..865 100 -> Plus
arm_2R 13312078..13312264 866..1052 100 -> Plus
arm_2R 13312324..13312917 1053..1646 100 -> Plus
arm_2R 13312975..13313184 1647..1856 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:54:56 Download gff for SD17026.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17425227..17425333 451..557 100 -> Plus
2R 17425397..17425704 558..865 100 -> Plus
2R 17424855..17425162 143..450 100 -> Plus
2R 17425772..17425958 866..1052 100 -> Plus
2R 17426018..17426611 1053..1646 100 -> Plus
2R 17426669..17426878 1647..1856 100   Plus
2R 17421631..17421772 1..142 100 -> Plus

SD17026.pep Sequence

Translation from 77 to 1762

> SD17026.pep
MSVTQTKQIKFYNPSSSASSDSDDRSLSDVTEQLYVDPYADLSNGLPGDL
NCCPASPTTVPAKASLDSPLKRSGRRQRTTSIGNQTTTANPSECIIRANN
RTIYTAGRPPWYNCAGQQVEPFVIGICGGSASGKTTVAEKIIESLDVPWV
TLLSMDCFYKILNEKQHEQALINEYNFDHPDAFDIELLLDVLTKLKEGRK
VEVPVYNFVTHGRESQTKTMYGANVIIFEGILTFHSPEVLKLLDMKIFVD
TDPDIRLARRLRRDISQRGRDLKGVLKQYLNMVKPSYCNYIAPTMAHADI
IVPRGGDNKVAIHLIVQHVHTQLQLRGFKLRETLANSYKDQPMPHSLHLL
HPTPQIKGLHTFIRCRNTSRDEFIFYSKRLIRLVIEYALSLFPFKKTTVE
TPQGVLYEGKRMESRKICGVSILRAGETMEQAVCDVCKDIRIGKILIQTN
LKTGEPELYYLRLPKDIKDYKVILMDATVATGAAAMMAIRVLLDHDVPED
NIILASLLMAEIGVHSIAYAFPKVKIVTSALDPEINSKFYVIPGIGNFGD
RYFGTEPSDEY*

SD17026.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13118-PA 618 GF13118-PA 87..618 23..561 2796 96.8 Plus
Dana\GF20736-PA 259 GF20736-PA 13..232 109..319 512 45.9 Plus
Dana\GF23996-PA 260 GF23996-PA 60..260 346..556 465 45 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20676-PA 617 GG20676-PA 65..617 7..561 2876 96.2 Plus
Dere\GG11275-PA 260 GG11275-PA 27..233 121..319 500 46.9 Plus
Dere\GG15291-PA 261 GG15291-PA 61..261 346..556 448 44.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21395-PA 618 GH21395-PA 80..618 16..561 2708 92.3 Plus
Dgri\GH23520-PA 219 GH23520-PA 1..219 343..561 1128 96.3 Plus
Dgri\GH18807-PA 259 GH18807-PA 21..232 116..319 515 46.2 Plus
Dgri\GH14521-PA 253 GH14521-PA 52..253 345..556 454 44.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k01209-PA 561 CG4798-PA 1..561 1..561 2916 100 Plus
l(2)k01209-PD 626 CG4798-PD 72..626 7..561 2810 97.5 Plus
l(2)k01209-PC 626 CG4798-PC 72..626 7..561 2810 97.5 Plus
l(2)k01209-PB 626 CG4798-PB 72..626 7..561 2810 97.5 Plus
Uck-PB 305 CG6364-PB 27..240 121..326 492 46.7 Plus
Uck-PC 260 CG6364-PC 27..233 121..319 485 46.9 Plus
Uck-PE 260 CG6364-PE 27..233 121..319 485 46.9 Plus
Uck-PD 260 CG6364-PD 27..233 121..319 485 46.9 Plus
Uck-PA 260 CG6364-PA 27..233 121..319 485 46.9 Plus
kri-PC 261 CG5537-PC 61..261 346..556 433 44.5 Plus
kri-PA 261 CG5537-PA 61..261 346..556 433 44.5 Plus
kri-PB 261 CG5537-PB 61..258 346..553 420 44.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18574-PA 625 GI18574-PA 87..625 16..561 2686 91.4 Plus
Dmoj\GI10065-PA 258 GI10065-PA 26..232 121..319 501 46.9 Plus
Dmoj\GI13298-PA 235 GI13298-PA 55..235 345..556 290 33.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11422-PA 612 GL11422-PA 73..612 23..561 2710 94.5 Plus
Dper\GL21848-PA 293 GL21848-PA 13..225 109..326 466 42.9 Plus
Dper\GL21026-PA 258 GL21026-PA 58..258 346..556 450 44.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24721-PA 610 GA24721-PA 71..610 23..561 2710 94.5 Plus
Dpse\GA19542-PB 279 GA19542-PB 13..239 109..326 513 45.4 Plus
Dpse\GA18955-PA 258 GA18955-PA 58..258 346..556 450 44.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21771-PA 612 GM21771-PA 69..612 7..561 2771 93.5 Plus
Dsec\GM26584-PA 260 GM26584-PA 27..233 121..319 503 46.9 Plus
Dsec\GM14723-PA 261 GM14723-PA 61..261 346..556 449 44.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11264-PA 625 GD11264-PA 73..625 7..561 2873 96.2 Plus
Dsim\GD21086-PA 260 GD21086-PA 27..233 121..319 503 46.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20368-PA 624 GJ20368-PA 86..624 16..561 2700 92.1 Plus
Dvir\GJ23800-PA 259 GJ23800-PA 26..232 121..319 499 46.4 Plus
Dvir\GJ12067-PA 253 GJ12067-PA 34..253 330..556 446 41.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:03:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21883-PA 611 GK21883-PA 77..611 23..561 2718 94.1 Plus
Dwil\GK22830-PA 259 GK22830-PA 15..232 110..319 502 45 Plus
Dwil\GK16656-PA 267 GK16656-PA 67..267 346..556 445 44.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11659-PA 623 GE11659-PA 71..623 7..561 2867 96 Plus
Dyak\GE23468-PA 260 GE23468-PA 27..233 121..319 503 46.9 Plus
Dyak\GE21512-PA 261 GE21512-PA 61..261 346..556 451 44.5 Plus

SD17026.hyp Sequence

Translation from 77 to 1762

> SD17026.hyp
MSVTQTKQIKFYNPSSSASSDSDDRSLSDVTEQLYVDPYADLSNGLPGDL
NCCPASPTTVPAKASLDSPLKRSGRRQRTTSIGNQTTTANPSECIIRANN
RTIYTAGRPPWYNCAGQQVEPFVIGICGGSASGKTTVAEKIIESLDVPWV
TLLSMDCFYKILNEKQHEQALINEYNFDHPDAFDIELLLDVLTKLKEGRK
VEVPVYNFVTHGRESQTKTMYGANVIIFEGILTFHSPEVLKLLDMKIFVD
TDPDIRLARRLRRDISQRGRDLKGVLKQYLNMVKPSYCNYIAPTMAHADI
IVPRGGDNKVAIHLIVQHVHTQLQLRGFKLRETLANSYKDQPMPHSLHLL
HPTPQIKGLHTFIRCRNTSRDEFIFYSKRLIRLVIEYALSLFPFKKTTVE
TPQGVLYEGKRMESRKICGVSILRAGETMEQAVCDVCKDIRIGKILIQTN
LKTGEPELYYLRLPKDIKDYKVILMDATVATGAAAMMAIRVLLDHDVPED
NIILASLLMAEIGVHSIAYAFPKVKIVTSALDPEINSKFYVIPGIGNFGD
RYFGTEPSDEY*

SD17026.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:13:39
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)k01209-PA 561 CG4798-PA 1..561 1..561 2916 100 Plus
l(2)k01209-PD 626 CG4798-PD 72..626 7..561 2810 97.5 Plus
l(2)k01209-PC 626 CG4798-PC 72..626 7..561 2810 97.5 Plus
l(2)k01209-PB 626 CG4798-PB 72..626 7..561 2810 97.5 Plus
CG6364-PB 305 CG6364-PB 27..240 121..326 492 46.7 Plus