Clone SD17309 Report

Search the DGRC for SD17309

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:173
Well:9
Vector:pOT2
Associated Gene/TranscriptATbp-RB
Protein status:SD17309.pep: gold
Preliminary Size:1213
Sequenced Size:2275

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17172 2002-01-01 Sim4 clustering to Release 2
CG40145 2002-12-11 Blastp of sequenced clone
CG40145 2003-01-01 Sim4 clustering to Release 3
ATbp 2008-04-29 Release 5.5 accounting
ATbp 2008-08-15 Release 5.9 accounting
ATbp 2008-12-18 5.12 accounting

Clone Sequence Records

SD17309.complete Sequence

2275 bp (2275 high quality bases) assembled on 2005-08-22

GenBank Submission: BT003486

> SD17309.complete
AGCTAAACAAAAACAAAAAAAAAATAAACATAAACAAACAACAGCACAAG
GACCGGACCTAGTCAAACAAAACAACGCCATGGGTTTTCCGCGCATCCTC
AGCAAGAACAACAAGATCTACACCAAGCTGGGCGAGTTCTGTTTGTCGGG
GGATAGCTTCTGGATTGTTTGTCACACGTGCCAAGAGGAGTTGCAGACAC
AGGATCAGTTCTGGAAGCACATACAGGATGAGCATAATTTCATGCACGGG
GTGGCAAAGGAACACAGTCGTACATCCAGCTACTGCCTAACGGATGTGGA
GGCTGCGGCGGCAGCAGCAACGCCAGGAAGCAGCTCCCAGCAAGGCGCCA
CAGCGATCAGTGTGCCTCTGGCACTTTACACCTGCTCAACCAAGTATTCT
GAGGAGGAGCAGCGGGAGGTGGAAATGCACGAACAGCAGGTGCAACACCA
AGTGCAACAGCAGCAAGCGCAGCAGCAGCAAGCGCAGCAGCAACAACACC
AACAGTCTCAGCAGCAAGGGCACCAGCAACACCAGGTTCAACAACAGCAG
ACCCACCAGCAGCTCCAACAGCAGCGGGATGTTGCCAAGGAGCTGGCTGA
ACTCCATGCCAATGCGGTAGCTGCCGCTGCAGCCTCCGCAGCTGTGGTAT
CCACAGGCGAAGGAACTACCCAAAGTAACAGCGCCATCGACATTAAAATA
GAGCCCAGCAGTCTGACACTTACACCCGAAATGCAGGCTGCTGCAGCAGC
TGGGGGGACCATTTACCATCTGCCACAGCTAGTTCCACCACCTGTACCGC
CTCCACCGCCAGGGTCCGGATTTGTAAGCGTCAGCGCCAGTACCAGCACC
TCCAATACGGTCAGCACCACGCCACCCAATGTTCTACAGCAGCAACAGCA
ACTAAACATGTCTGTCGTTCCTTCGACGGCTATGGCCGCCGCTATGCTAG
CCGCCAGTCAGGAACAGCTGCCCAAGGACTCTAACAGCACGACGGCCAGC
GCCGGGAGTGCTGTCTCTTCAGATGACGGAGAACGCTGGTACGTCTGCGA
TTACGAGACTTGTGGTTTGAAGTTTAAGTATAAGTCGAGAATGGAGCTAC
ATCGGGTAGTTCACAGCAAGGAGCGGCGGTTCAATTGCGAACTGTGCAGT
GCCTCCTTCAAGCAGTCGTGCAACCTATCAACACACCGGAAGAAAAAGCA
CGCACTGAGAGGCATCAAAAGCGAGATATTGCCGCAGCGCTTTTAGGCTA
TACATTAAACAGAGACAGCTCAAAGATTCCCCAATTAACCACATTGCATC
TCGAAAAACCCTGTTTGAAAATGTTGACTTAAGTTCAAGGAAATCGCTTG
TTTGCCACAAAAAATGTTCATTGTGCTAGGAGCCACAGAAATCTGTTGAA
TTAGCAAGGTGTGTACAAAAGAGTTCTACATTTTGTCTCTTCCATGATTT
CTCTGCCTTTTCTAAGACTCAATAAAGTTATAGACTTTATATTTATATTT
ATAAATTAAATAATTCTGGATAATTCCGACTGTAAATTAAAATTTAGCAC
TGCGTCAACATTGTGGCAGGCAAGTGACATATATATGTATATCACATATG
TGTATATATATATGCTCTACAAATGAATATATATTGTATATAAATAAATA
TATAATATAAATATATATAACATGTATGCATATTTAGTATATAAAAATAT
ACAAATATAAACTAATATCTAATGTAGGCTTAGGTTGTCATGTAAATGTA
ATGTAAATGTTTAGGCAGAGGTATGAAAACCCCCGTTATCTTTTACGCTC
TAAGTGTACATGCAATGATGTGTGTAAAGGAGACCAAAATTTAGAAGACG
GAATTAAGCCCAACCAAAAAATATGTTGGTGTCTAGACCGTTGTGAGTTT
TGTTTTAGAGTAAATTGGTTCACAATGTGTTAAAACCGATTAGTCTCCTT
TGAGTAAGTCTTTTACTTTAAGTTGAAATGGATTCTGAGGACAGCGAGAT
TTCTGGGACATATCTAGTGGTTGCTGAAATAGTGTCAGTTACAGTTTACA
AGGTTAGAACAGTTATTTACCTAGATACACAATATTTATGTATATATGGC
CATATATACAGCTGCGAAAAATTTAATATTACCACTTGCCCAATCAAGGT
TTGAATAAGTCCCAATTTTAGGATTTAAAAAGAGCAAAAATACCTTTTTA
GAAAAGTTAAATCATGCACTTATTAGAAAATAAAAAATAATTACATTAAA
AAAAAAAAAAAAAAAAAAAAAAAAA

SD17309.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:30:58
Subject Length Description Subject Range Query Range Score Percent Strand
ATbp-RB 2351 ATbp-RB 105..2351 1..2247 11235 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
chrXHet 204175 chrXHet 85220..87209 258..2247 9950 100 Plus
chrXHet 204175 chrXHet 84903..85162 1..260 1300 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:56:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23106342..23108331 258..2247 9950 100 Plus
X 23542271 X 23106025..23106284 1..260 1300 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 23091434..23093423 258..2247 9950 100 Plus
X 23527363 X 23091117..23091376 1..260 1300 100 Plus
Blast to na_te.dros performed 2019-03-16 18:59:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6756..6931 405..579 347 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6878 417..575 338 69.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2308..2518 432..655 307 62.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2542 454..695 306 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6899 470..642 293 66.1 Plus
roo 9092 roo DM_ROO 9092bp 1059..1154 474..572 245 73.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..7030 485..793 239 56.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2710..2858 431..583 197 60.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2496..2655 428..575 195 63.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6915 509..710 181 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2547 509..753 180 55.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6635..6950 446..779 178 56.5 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 54..175 458..577 163 62.6 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9084..9205 458..577 163 62.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1518..1587 488..560 160 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2592..2665 485..561 153 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2286..2666 505..904 152 54.3 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 883..1033 421..572 136 59.9 Plus
roo 9092 roo DM_ROO 9092bp 1059..1112 522..575 135 72.2 Plus
412 7567 412 412 7567bp 1169..1263 1518..1427 126 61.1 Minus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 120..206 498..585 122 61.4 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9150..9236 498..585 122 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1500..1564 513..579 114 65.7 Plus

SD17309.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:00:26 Download gff for SD17309.complete
Subject Subject Range Query Range Percent Splice Strand
chrXHet 84903..85161 1..259 100 -> Plus
chrXHet 85222..87209 260..2247 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:08:51 Download gff for SD17309.complete
Subject Subject Range Query Range Percent Splice Strand
ATbp-RA 1..1245 2..1246 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:54:01 Download gff for SD17309.complete
Subject Subject Range Query Range Percent Splice Strand
ATbp-RB 1..1167 80..1246 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:30:14 Download gff for SD17309.complete
Subject Subject Range Query Range Percent Splice Strand
ATbp-RB 1..1167 80..1246 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:34:44 Download gff for SD17309.complete
Subject Subject Range Query Range Percent Splice Strand
ATbp-RA 1..1245 2..1246 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:37 Download gff for SD17309.complete
Subject Subject Range Query Range Percent Splice Strand
ATbp-RB 1..1167 80..1246 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:29:24 Download gff for SD17309.complete
Subject Subject Range Query Range Percent Splice Strand
ATbp-RA 1..2247 1..2247 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:54:01 Download gff for SD17309.complete
Subject Subject Range Query Range Percent Splice Strand
ATbp-RB 1..2247 1..2247 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:14 Download gff for SD17309.complete
Subject Subject Range Query Range Percent Splice Strand
ATbp-RB 1..2247 1..2247 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:34:44 Download gff for SD17309.complete
Subject Subject Range Query Range Percent Splice Strand
ATbp-RA 1..2247 1..2247 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:37 Download gff for SD17309.complete
Subject Subject Range Query Range Percent Splice Strand
ATbp-RB 23..2269 1..2247 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:00:26 Download gff for SD17309.complete
Subject Subject Range Query Range Percent Splice Strand
X 23106025..23106283 1..259 100 -> Plus
X 23106344..23108331 260..2247 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:00:26 Download gff for SD17309.complete
Subject Subject Range Query Range Percent Splice Strand
X 23106025..23106283 1..259 100 -> Plus
X 23106344..23108331 260..2247 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:00:26 Download gff for SD17309.complete
Subject Subject Range Query Range Percent Splice Strand
X 23106025..23106283 1..259 100 -> Plus
X 23106344..23108331 260..2247 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:14 Download gff for SD17309.complete
Subject Subject Range Query Range Percent Splice Strand
XHet 84843..85101 1..259 100 -> Plus
XHet 85162..87149 260..2247 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:13:17 Download gff for SD17309.complete
Subject Subject Range Query Range Percent Splice Strand
X 23091117..23091375 1..259 100 -> Plus
X 23091436..23093423 260..2247 100   Plus

SD17309.hyp Sequence

Translation from 0 to 1245

> SD17309.hyp
AKQKQKKNKHKQTTAQGPDLVKQNNAMGFPRILSKNNKIYTKLGEFCLSG
DSFWIVCHTCQEELQTQDQFWKHIQDEHNFMHGVAKEHSRTSSYCLTDVE
AAAAAATPGSSSQQGATAISVPLALYTCSTKYSEEEQREVEMHEQQVQHQ
VQQQQAQQQQAQQQQHQQSQQQGHQQHQVQQQQTHQQLQQQRDVAKELAE
LHANAVAAAAASAAVVSTGEGTTQSNSAIDIKIEPSSLTLTPEMQAAAAA
GGTIYHLPQLVPPPVPPPPPGSGFVSVSASTSTSNTVSTTPPNVLQQQQQ
LNMSVVPSTAMAAAMLAASQEQLPKDSNSTTASAGSAVSSDDGERWYVCD
YETCGLKFKYKSRMELHRVVHSKERRFNCELCSASFKQSCNLSTHRKKKH
ALRGIKSEILPQRF*

SD17309.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:28:06
Subject Length Description Subject Range Query Range Score Percent Strand
ATbp-PB 388 CG17172-PB 1..388 27..414 2009 100 Plus
Cf2-PF 431 CG11924-PF 127..431 89..402 199 27.4 Plus
Cf2-PE 482 CG11924-PE 178..482 89..402 199 27.4 Plus
Cf2-PB 482 CG11924-PB 178..482 89..402 199 27.4 Plus
Cf2-PC 482 CG11924-PC 178..482 89..402 199 27.4 Plus

SD17309.pep Sequence

Translation from 1 to 1245

> SD17309.pep
AKQKQKKNKHKQTTAQGPDLVKQNNAMGFPRILSKNNKIYTKLGEFCLSG
DSFWIVCHTCQEELQTQDQFWKHIQDEHNFMHGVAKEHSRTSSYCLTDVE
AAAAAATPGSSSQQGATAISVPLALYTCSTKYSEEEQREVEMHEQQVQHQ
VQQQQAQQQQAQQQQHQQSQQQGHQQHQVQQQQTHQQLQQQRDVAKELAE
LHANAVAAAAASAAVVSTGEGTTQSNSAIDIKIEPSSLTLTPEMQAAAAA
GGTIYHLPQLVPPPVPPPPPGSGFVSVSASTSTSNTVSTTPPNVLQQQQQ
LNMSVVPSTAMAAAMLAASQEQLPKDSNSTTASAGSAVSSDDGERWYVCD
YETCGLKFKYKSRMELHRVVHSKERRFNCELCSASFKQSCNLSTHRKKKH
ALRGIKSEILPQRF*

SD17309.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19444-PA 638 GF19444-PA 314..638 87..414 876 71.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:19:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19764-PA 336 GG19764-PA 1..321 27..345 1007 88.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24797-PA 419 GH24797-PA 1..419 27..414 901 58.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
ATbp-PB 388 CG17172-PB 1..388 27..414 2009 100 Plus
Cf2-PG 537 CG11924-PG 178..484 89..404 204 27.5 Plus
Cf2-PF 431 CG11924-PF 127..431 89..402 199 27.4 Plus
Cf2-PE 482 CG11924-PE 178..482 89..402 199 27.4 Plus
Cf2-PB 482 CG11924-PB 178..482 89..402 199 27.4 Plus
Cf2-PC 482 CG11924-PC 178..482 89..402 199 27.4 Plus
Cf2-PA 510 CG11924-PA 178..475 89..395 198 27.7 Plus
btd-PA 644 CG12653-PA 12..217 126..340 194 30.1 Plus
Smr-PF 3601 CG4013-PF 90..384 61..343 194 28.1 Plus
Smr-PE 3601 CG4013-PE 90..384 61..343 194 28.1 Plus
Smr-PD 3601 CG4013-PD 90..384 61..343 194 28.1 Plus
Smr-PG 3607 CG4013-PG 90..390 61..343 192 27.4 Plus
Ptip-PA 2294 CG32133-PA 203..409 129..324 183 28.4 Plus
Ptip-PA 2294 CG32133-PA 198..327 130..267 180 34.3 Plus
CG12236-PB 510 CG12236-PB 170..509 108..408 179 22.7 Plus
sbb-PH 2302 CG5580-PH 1849..2024 85..274 179 30.3 Plus
sbb-PD 2302 CG5580-PD 1849..2024 85..274 179 30.3 Plus
sbb-PG 2312 CG5580-PG 1859..2034 85..274 179 30.3 Plus
sbb-PJ 2330 CG5580-PJ 1859..2034 85..274 179 30.3 Plus
CG15740-PB 975 CG15740-PB 407..661 61..324 177 25.8 Plus
CG30389-PD 980 CG30389-PD 830..961 114..243 177 37.6 Plus
CG30389-PC 980 CG30389-PC 830..961 114..243 177 37.6 Plus
CG30389-PA 980 CG30389-PA 830..961 114..243 177 37.6 Plus
CG30389-PF 1009 CG30389-PF 830..961 114..243 177 37.6 Plus
CG30389-PE 1037 CG30389-PE 887..1018 114..243 177 37.6 Plus
Efa6-PD 1521 CG31158-PD 752..955 146..337 175 29.3 Plus
Efa6-PI 1554 CG31158-PI 752..955 146..337 175 29.3 Plus
Efa6-PH 1601 CG31158-PH 832..1035 146..337 175 29.3 Plus
rn-PC 692 CG42277-PC 76..300 163..414 170 27.2 Plus
Unr-PC 1032 CG7015-PC 66..156 131..229 170 39.4 Plus
Unr-PA 1039 CG7015-PA 66..156 131..229 170 39.4 Plus
Unr-PE 1057 CG7015-PE 66..156 131..229 170 39.4 Plus
Unr-PD 1057 CG7015-PD 66..156 131..229 170 39.4 Plus
Unr-PB 1057 CG7015-PB 66..156 131..229 170 39.4 Plus
ph-p-PD 1346 CG18412-PD 568..824 61..331 170 25.5 Plus
ph-p-PC 1346 CG18412-PC 568..824 61..331 170 25.5 Plus
ph-p-PB 1346 CG18412-PB 568..824 61..331 170 25.5 Plus
CG16711-PC 1497 CG16711-PC 1358..1477 126..250 170 38.5 Plus
ph-p-PA 1589 CG18412-PA 811..1067 61..331 170 25.5 Plus
corto-PD 550 CG2530-PD 194..370 79..252 166 29.8 Plus
corto-PC 550 CG2530-PC 194..370 79..252 166 29.8 Plus
corto-PB 550 CG2530-PB 194..370 79..252 166 29.8 Plus
corto-PE 550 CG2530-PE 194..370 79..252 166 29.8 Plus
corto-PA 550 CG2530-PA 194..370 79..252 166 29.8 Plus
fs(1)h-PB 2038 CG2252-PB 1496..1723 133..337 166 28.9 Plus
fs(1)h-PG 2046 CG2252-PG 1504..1731 133..337 166 28.9 Plus
CG15365-PC 821 CG15365-PC 492..640 51..214 164 30.9 Plus
CG15365-PA 821 CG15365-PA 492..640 51..214 164 30.9 Plus
CG15365-PB 828 CG15365-PB 499..647 51..214 164 30.9 Plus
CG9650-PJ 1140 CG9650-PJ 404..692 77..397 164 23.5 Plus
CG9650-PI 1207 CG9650-PI 471..759 77..397 164 23.5 Plus
CG9650-PH 1209 CG9650-PH 473..761 77..397 164 23.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15293-PA 208 GI15293-PA 1..179 27..210 465 69.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18332-PA 403 GL18332-PA 1..373 27..414 1208 72.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA27554-PA 375 GA27554-PA 1..375 27..414 1208 72.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13283-PA 216 GM13283-PA 1..198 27..223 659 90.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16440-PA 376 GJ16440-PA 1..376 27..414 897 56.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25708-PA 672 GK25708-PA 1..214 27..261 637 66.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15242-PA 676 GE15242-PA 339..676 80..414 1085 88.5 Plus