BDGP Sequence Production Resources |
Search the DGRC for SD17309
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 173 |
Well: | 9 |
Vector: | pOT2 |
Associated Gene/Transcript | ATbp-RB |
Protein status: | SD17309.pep: gold |
Preliminary Size: | 1213 |
Sequenced Size: | 2275 |
Gene | Date | Evidence |
---|---|---|
CG17172 | 2002-01-01 | Sim4 clustering to Release 2 |
CG40145 | 2002-12-11 | Blastp of sequenced clone |
CG40145 | 2003-01-01 | Sim4 clustering to Release 3 |
ATbp | 2008-04-29 | Release 5.5 accounting |
ATbp | 2008-08-15 | Release 5.9 accounting |
ATbp | 2008-12-18 | 5.12 accounting |
2275 bp (2275 high quality bases) assembled on 2005-08-22
GenBank Submission: BT003486
> SD17309.complete AGCTAAACAAAAACAAAAAAAAAATAAACATAAACAAACAACAGCACAAG GACCGGACCTAGTCAAACAAAACAACGCCATGGGTTTTCCGCGCATCCTC AGCAAGAACAACAAGATCTACACCAAGCTGGGCGAGTTCTGTTTGTCGGG GGATAGCTTCTGGATTGTTTGTCACACGTGCCAAGAGGAGTTGCAGACAC AGGATCAGTTCTGGAAGCACATACAGGATGAGCATAATTTCATGCACGGG GTGGCAAAGGAACACAGTCGTACATCCAGCTACTGCCTAACGGATGTGGA GGCTGCGGCGGCAGCAGCAACGCCAGGAAGCAGCTCCCAGCAAGGCGCCA CAGCGATCAGTGTGCCTCTGGCACTTTACACCTGCTCAACCAAGTATTCT GAGGAGGAGCAGCGGGAGGTGGAAATGCACGAACAGCAGGTGCAACACCA AGTGCAACAGCAGCAAGCGCAGCAGCAGCAAGCGCAGCAGCAACAACACC AACAGTCTCAGCAGCAAGGGCACCAGCAACACCAGGTTCAACAACAGCAG ACCCACCAGCAGCTCCAACAGCAGCGGGATGTTGCCAAGGAGCTGGCTGA ACTCCATGCCAATGCGGTAGCTGCCGCTGCAGCCTCCGCAGCTGTGGTAT CCACAGGCGAAGGAACTACCCAAAGTAACAGCGCCATCGACATTAAAATA GAGCCCAGCAGTCTGACACTTACACCCGAAATGCAGGCTGCTGCAGCAGC TGGGGGGACCATTTACCATCTGCCACAGCTAGTTCCACCACCTGTACCGC CTCCACCGCCAGGGTCCGGATTTGTAAGCGTCAGCGCCAGTACCAGCACC TCCAATACGGTCAGCACCACGCCACCCAATGTTCTACAGCAGCAACAGCA ACTAAACATGTCTGTCGTTCCTTCGACGGCTATGGCCGCCGCTATGCTAG CCGCCAGTCAGGAACAGCTGCCCAAGGACTCTAACAGCACGACGGCCAGC GCCGGGAGTGCTGTCTCTTCAGATGACGGAGAACGCTGGTACGTCTGCGA TTACGAGACTTGTGGTTTGAAGTTTAAGTATAAGTCGAGAATGGAGCTAC ATCGGGTAGTTCACAGCAAGGAGCGGCGGTTCAATTGCGAACTGTGCAGT GCCTCCTTCAAGCAGTCGTGCAACCTATCAACACACCGGAAGAAAAAGCA CGCACTGAGAGGCATCAAAAGCGAGATATTGCCGCAGCGCTTTTAGGCTA TACATTAAACAGAGACAGCTCAAAGATTCCCCAATTAACCACATTGCATC TCGAAAAACCCTGTTTGAAAATGTTGACTTAAGTTCAAGGAAATCGCTTG TTTGCCACAAAAAATGTTCATTGTGCTAGGAGCCACAGAAATCTGTTGAA TTAGCAAGGTGTGTACAAAAGAGTTCTACATTTTGTCTCTTCCATGATTT CTCTGCCTTTTCTAAGACTCAATAAAGTTATAGACTTTATATTTATATTT ATAAATTAAATAATTCTGGATAATTCCGACTGTAAATTAAAATTTAGCAC TGCGTCAACATTGTGGCAGGCAAGTGACATATATATGTATATCACATATG TGTATATATATATGCTCTACAAATGAATATATATTGTATATAAATAAATA TATAATATAAATATATATAACATGTATGCATATTTAGTATATAAAAATAT ACAAATATAAACTAATATCTAATGTAGGCTTAGGTTGTCATGTAAATGTA ATGTAAATGTTTAGGCAGAGGTATGAAAACCCCCGTTATCTTTTACGCTC TAAGTGTACATGCAATGATGTGTGTAAAGGAGACCAAAATTTAGAAGACG GAATTAAGCCCAACCAAAAAATATGTTGGTGTCTAGACCGTTGTGAGTTT TGTTTTAGAGTAAATTGGTTCACAATGTGTTAAAACCGATTAGTCTCCTT TGAGTAAGTCTTTTACTTTAAGTTGAAATGGATTCTGAGGACAGCGAGAT TTCTGGGACATATCTAGTGGTTGCTGAAATAGTGTCAGTTACAGTTTACA AGGTTAGAACAGTTATTTACCTAGATACACAATATTTATGTATATATGGC CATATATACAGCTGCGAAAAATTTAATATTACCACTTGCCCAATCAAGGT TTGAATAAGTCCCAATTTTAGGATTTAAAAAGAGCAAAAATACCTTTTTA GAAAAGTTAAATCATGCACTTATTAGAAAATAAAAAATAATTACATTAAA AAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ATbp-RB | 2351 | ATbp-RB | 105..2351 | 1..2247 | 11235 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6931 | 405..579 | 347 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6878 | 417..575 | 338 | 69.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2518 | 432..655 | 307 | 62.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2542 | 454..695 | 306 | 60.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6899 | 470..642 | 293 | 66.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1154 | 474..572 | 245 | 73.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..7030 | 485..793 | 239 | 56.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2710..2858 | 431..583 | 197 | 60.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2496..2655 | 428..575 | 195 | 63.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6915 | 509..710 | 181 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2547 | 509..753 | 180 | 55.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6635..6950 | 446..779 | 178 | 56.5 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 54..175 | 458..577 | 163 | 62.6 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9084..9205 | 458..577 | 163 | 62.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1587 | 488..560 | 160 | 71.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2592..2665 | 485..561 | 153 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2286..2666 | 505..904 | 152 | 54.3 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 883..1033 | 421..572 | 136 | 59.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1112 | 522..575 | 135 | 72.2 | Plus |
412 | 7567 | 412 412 7567bp | 1169..1263 | 1518..1427 | 126 | 61.1 | Minus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 120..206 | 498..585 | 122 | 61.4 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9150..9236 | 498..585 | 122 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1500..1564 | 513..579 | 114 | 65.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrXHet | 84903..85161 | 1..259 | 100 | -> | Plus |
chrXHet | 85222..87209 | 260..2247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATbp-RA | 1..1245 | 2..1246 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATbp-RB | 1..1167 | 80..1246 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATbp-RB | 1..1167 | 80..1246 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATbp-RA | 1..1245 | 2..1246 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATbp-RB | 1..1167 | 80..1246 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATbp-RA | 1..2247 | 1..2247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATbp-RB | 1..2247 | 1..2247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATbp-RB | 1..2247 | 1..2247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATbp-RA | 1..2247 | 1..2247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
ATbp-RB | 23..2269 | 1..2247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 23106025..23106283 | 1..259 | 100 | -> | Plus |
X | 23106344..23108331 | 260..2247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 23106025..23106283 | 1..259 | 100 | -> | Plus |
X | 23106344..23108331 | 260..2247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 23106025..23106283 | 1..259 | 100 | -> | Plus |
X | 23106344..23108331 | 260..2247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
XHet | 84843..85101 | 1..259 | 100 | -> | Plus |
XHet | 85162..87149 | 260..2247 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 23091117..23091375 | 1..259 | 100 | -> | Plus |
X | 23091436..23093423 | 260..2247 | 100 | Plus |
Translation from 0 to 1245
> SD17309.hyp AKQKQKKNKHKQTTAQGPDLVKQNNAMGFPRILSKNNKIYTKLGEFCLSG DSFWIVCHTCQEELQTQDQFWKHIQDEHNFMHGVAKEHSRTSSYCLTDVE AAAAAATPGSSSQQGATAISVPLALYTCSTKYSEEEQREVEMHEQQVQHQ VQQQQAQQQQAQQQQHQQSQQQGHQQHQVQQQQTHQQLQQQRDVAKELAE LHANAVAAAAASAAVVSTGEGTTQSNSAIDIKIEPSSLTLTPEMQAAAAA GGTIYHLPQLVPPPVPPPPPGSGFVSVSASTSTSNTVSTTPPNVLQQQQQ LNMSVVPSTAMAAAMLAASQEQLPKDSNSTTASAGSAVSSDDGERWYVCD YETCGLKFKYKSRMELHRVVHSKERRFNCELCSASFKQSCNLSTHRKKKH ALRGIKSEILPQRF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ATbp-PB | 388 | CG17172-PB | 1..388 | 27..414 | 2009 | 100 | Plus |
Cf2-PF | 431 | CG11924-PF | 127..431 | 89..402 | 199 | 27.4 | Plus |
Cf2-PE | 482 | CG11924-PE | 178..482 | 89..402 | 199 | 27.4 | Plus |
Cf2-PB | 482 | CG11924-PB | 178..482 | 89..402 | 199 | 27.4 | Plus |
Cf2-PC | 482 | CG11924-PC | 178..482 | 89..402 | 199 | 27.4 | Plus |
Translation from 1 to 1245
> SD17309.pep AKQKQKKNKHKQTTAQGPDLVKQNNAMGFPRILSKNNKIYTKLGEFCLSG DSFWIVCHTCQEELQTQDQFWKHIQDEHNFMHGVAKEHSRTSSYCLTDVE AAAAAATPGSSSQQGATAISVPLALYTCSTKYSEEEQREVEMHEQQVQHQ VQQQQAQQQQAQQQQHQQSQQQGHQQHQVQQQQTHQQLQQQRDVAKELAE LHANAVAAAAASAAVVSTGEGTTQSNSAIDIKIEPSSLTLTPEMQAAAAA GGTIYHLPQLVPPPVPPPPPGSGFVSVSASTSTSNTVSTTPPNVLQQQQQ LNMSVVPSTAMAAAMLAASQEQLPKDSNSTTASAGSAVSSDDGERWYVCD YETCGLKFKYKSRMELHRVVHSKERRFNCELCSASFKQSCNLSTHRKKKH ALRGIKSEILPQRF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF19444-PA | 638 | GF19444-PA | 314..638 | 87..414 | 876 | 71.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19764-PA | 336 | GG19764-PA | 1..321 | 27..345 | 1007 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24797-PA | 419 | GH24797-PA | 1..419 | 27..414 | 901 | 58.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
ATbp-PB | 388 | CG17172-PB | 1..388 | 27..414 | 2009 | 100 | Plus |
Cf2-PG | 537 | CG11924-PG | 178..484 | 89..404 | 204 | 27.5 | Plus |
Cf2-PF | 431 | CG11924-PF | 127..431 | 89..402 | 199 | 27.4 | Plus |
Cf2-PE | 482 | CG11924-PE | 178..482 | 89..402 | 199 | 27.4 | Plus |
Cf2-PB | 482 | CG11924-PB | 178..482 | 89..402 | 199 | 27.4 | Plus |
Cf2-PC | 482 | CG11924-PC | 178..482 | 89..402 | 199 | 27.4 | Plus |
Cf2-PA | 510 | CG11924-PA | 178..475 | 89..395 | 198 | 27.7 | Plus |
btd-PA | 644 | CG12653-PA | 12..217 | 126..340 | 194 | 30.1 | Plus |
Smr-PF | 3601 | CG4013-PF | 90..384 | 61..343 | 194 | 28.1 | Plus |
Smr-PE | 3601 | CG4013-PE | 90..384 | 61..343 | 194 | 28.1 | Plus |
Smr-PD | 3601 | CG4013-PD | 90..384 | 61..343 | 194 | 28.1 | Plus |
Smr-PG | 3607 | CG4013-PG | 90..390 | 61..343 | 192 | 27.4 | Plus |
Ptip-PA | 2294 | CG32133-PA | 203..409 | 129..324 | 183 | 28.4 | Plus |
Ptip-PA | 2294 | CG32133-PA | 198..327 | 130..267 | 180 | 34.3 | Plus |
CG12236-PB | 510 | CG12236-PB | 170..509 | 108..408 | 179 | 22.7 | Plus |
sbb-PH | 2302 | CG5580-PH | 1849..2024 | 85..274 | 179 | 30.3 | Plus |
sbb-PD | 2302 | CG5580-PD | 1849..2024 | 85..274 | 179 | 30.3 | Plus |
sbb-PG | 2312 | CG5580-PG | 1859..2034 | 85..274 | 179 | 30.3 | Plus |
sbb-PJ | 2330 | CG5580-PJ | 1859..2034 | 85..274 | 179 | 30.3 | Plus |
CG15740-PB | 975 | CG15740-PB | 407..661 | 61..324 | 177 | 25.8 | Plus |
CG30389-PD | 980 | CG30389-PD | 830..961 | 114..243 | 177 | 37.6 | Plus |
CG30389-PC | 980 | CG30389-PC | 830..961 | 114..243 | 177 | 37.6 | Plus |
CG30389-PA | 980 | CG30389-PA | 830..961 | 114..243 | 177 | 37.6 | Plus |
CG30389-PF | 1009 | CG30389-PF | 830..961 | 114..243 | 177 | 37.6 | Plus |
CG30389-PE | 1037 | CG30389-PE | 887..1018 | 114..243 | 177 | 37.6 | Plus |
Efa6-PD | 1521 | CG31158-PD | 752..955 | 146..337 | 175 | 29.3 | Plus |
Efa6-PI | 1554 | CG31158-PI | 752..955 | 146..337 | 175 | 29.3 | Plus |
Efa6-PH | 1601 | CG31158-PH | 832..1035 | 146..337 | 175 | 29.3 | Plus |
rn-PC | 692 | CG42277-PC | 76..300 | 163..414 | 170 | 27.2 | Plus |
Unr-PC | 1032 | CG7015-PC | 66..156 | 131..229 | 170 | 39.4 | Plus |
Unr-PA | 1039 | CG7015-PA | 66..156 | 131..229 | 170 | 39.4 | Plus |
Unr-PE | 1057 | CG7015-PE | 66..156 | 131..229 | 170 | 39.4 | Plus |
Unr-PD | 1057 | CG7015-PD | 66..156 | 131..229 | 170 | 39.4 | Plus |
Unr-PB | 1057 | CG7015-PB | 66..156 | 131..229 | 170 | 39.4 | Plus |
ph-p-PD | 1346 | CG18412-PD | 568..824 | 61..331 | 170 | 25.5 | Plus |
ph-p-PC | 1346 | CG18412-PC | 568..824 | 61..331 | 170 | 25.5 | Plus |
ph-p-PB | 1346 | CG18412-PB | 568..824 | 61..331 | 170 | 25.5 | Plus |
CG16711-PC | 1497 | CG16711-PC | 1358..1477 | 126..250 | 170 | 38.5 | Plus |
ph-p-PA | 1589 | CG18412-PA | 811..1067 | 61..331 | 170 | 25.5 | Plus |
corto-PD | 550 | CG2530-PD | 194..370 | 79..252 | 166 | 29.8 | Plus |
corto-PC | 550 | CG2530-PC | 194..370 | 79..252 | 166 | 29.8 | Plus |
corto-PB | 550 | CG2530-PB | 194..370 | 79..252 | 166 | 29.8 | Plus |
corto-PE | 550 | CG2530-PE | 194..370 | 79..252 | 166 | 29.8 | Plus |
corto-PA | 550 | CG2530-PA | 194..370 | 79..252 | 166 | 29.8 | Plus |
fs(1)h-PB | 2038 | CG2252-PB | 1496..1723 | 133..337 | 166 | 28.9 | Plus |
fs(1)h-PG | 2046 | CG2252-PG | 1504..1731 | 133..337 | 166 | 28.9 | Plus |
CG15365-PC | 821 | CG15365-PC | 492..640 | 51..214 | 164 | 30.9 | Plus |
CG15365-PA | 821 | CG15365-PA | 492..640 | 51..214 | 164 | 30.9 | Plus |
CG15365-PB | 828 | CG15365-PB | 499..647 | 51..214 | 164 | 30.9 | Plus |
CG9650-PJ | 1140 | CG9650-PJ | 404..692 | 77..397 | 164 | 23.5 | Plus |
CG9650-PI | 1207 | CG9650-PI | 471..759 | 77..397 | 164 | 23.5 | Plus |
CG9650-PH | 1209 | CG9650-PH | 473..761 | 77..397 | 164 | 23.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15293-PA | 208 | GI15293-PA | 1..179 | 27..210 | 465 | 69.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18332-PA | 403 | GL18332-PA | 1..373 | 27..414 | 1208 | 72.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27554-PA | 375 | GA27554-PA | 1..375 | 27..414 | 1208 | 72.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13283-PA | 216 | GM13283-PA | 1..198 | 27..223 | 659 | 90.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ16440-PA | 376 | GJ16440-PA | 1..376 | 27..414 | 897 | 56.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25708-PA | 672 | GK25708-PA | 1..214 | 27..261 | 637 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15242-PA | 676 | GE15242-PA | 339..676 | 80..414 | 1085 | 88.5 | Plus |