Clone SD17528 Report

Search the DGRC for SD17528

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:175
Well:28
Vector:pOT2
Associated Gene/TranscriptRpS8-RC
Protein status:SD17528.pep: gold
Sequenced Size:2645

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18042 2002-01-01 Sim4 clustering to Release 2
CG7808 2002-05-31 Blastp of sequenced clone
RpS8 2008-04-29 Release 5.5 accounting
RpS8 2008-08-15 Release 5.9 accounting
Glt 2008-08-15 Release 5.9 accounting
RpS8 2008-12-18 5.12 accounting
Glt 2008-12-18 5.12 accounting

Clone Sequence Records

SD17528.complete Sequence

2645 bp (2645 high quality bases) assembled on 2002-05-31

GenBank Submission: AY118446

> SD17528.complete
CATCTTTCTTATTTTAATCCTTCATTACATTCGTTGGTCGTGGTGGTAAT
CGGAGGTGAAAAGTTAGTCGTCGGCTTATAGATCACTCTATAATTTGGCA
AGTAAATTCCCTCGCCAAAGTGTGGATCTAGTTCAAGCGGACTTTGCTGA
TTGTTTGTGAAGCGTAGGAAGGGGCCGTACTCGGAGGTAGCCTGTGGCCA
TACACCAGAGCTAGGATTGGGCACGCCAGTAGTAGCAAAGTTCACCCACA
TTGTGACCAAGGCACGAGACAGCGATCTGTCCAAGGGGTTCAGGCGACTA
GCCTCGGGTGGATAGGGGAATAAATACACGCTGTCATCGCTGAGCGAGGC
ATCTACTCCGAAGGGAAGAGGGTTGGACAGGTGTCCGAACCGATGGTGCT
CTCCGCGGTAATCGAAGGTATACAGGTAGGCCGGCACGGAGCGGTATGAC
TGACTGATGGAGTTAATCACGGGGGCACGATACAGGATGTAGTTGCTCAG
CTCGAGCAGACCAGGAGCCACTGTTTGCAGACTAGCCGTCTGTTCTTGGA
TCGGAGTAAAGATCTCGCGCAGTGCCCACTGCTTCCAGAGGCGGTGCTCG
CTGGGCGGTGCGGTGTGCCGCAGGACAACGTCGATGTAGTCACTCACATT
GCGAGACTGCAGTCGTGCGAGCTGATCATAGATTCGCGACACGATGAACG
CACTGGCGTCCTTTGTGGCCCCGATAATCATGGGCAGTGCAAGGCTGCTG
TTGGTGGCTAGTGAGGCTGGGTGGCTGGGTAGGAAGCCTAGAGGGTCGCC
AACCACCAGTTTGAAGCCACCCAGTTGGGTGAGCCCGAGATGCTCGTTTT
GAAGAAGCAGCTGCTCGAAGGCCGCCACCAGCTGGGAGGTGGGCAGTCGG
GCGAGGCAATCGTATAGGGGCTTAAGTCCTTGTGCGGATGGGTTAATGGA
TGGTGGTGGGCAGCGAGCAAGACGGGCGAAGGTACTCAAGGTGTCAAGTG
GCTGGTTGTCAATCAGGTAGGGGTTCAAGGCGGTGCCCGACTGCAGGATC
AGCTGCTGGAAGAGATTGCCGGCACGACCGCTAAGGCTCAAGGCGTGTGC
CAATGTTGCGCCACCAGCCTGACCCACTAGGGTCACCTGTCCCGCATTGC
CACCGAAGTGGACCACATTGCGTTGCAGCCACTCAAGAGCCAATTGCAGA
TCGGAAAGGGCGACGTTTCCAGGAAGCTCGTCGGTTAATGCGCTTAGGAA
GCCGAATGGAGCCAGTCGGTAGTTGATGGAGACCAACAGCACATCCTTTT
CCAGAACATAGTCAGGTTGGGCCTCCTCAGAACCGCCATCGAACAGCATT
TCACCGTGAACAAAGACCAAAACGGGCAGCTGATTGGCGCCTTCGGGTGC
GTAGATGTCCAAGGTAAGGCAATCGTCGACGTTTTCTCCCCGCGATTCAG
ATAACCTCAGGCGATCGAGCTCCGGAAACTGGGCACAATTGGGGCTCTGG
ACGGTGGCATTAACTCGTCCCTGGTATCCAATCGGTTGTGCCGCCTGGAA
GCGCGCCAAGCCACCTCCAACCGTGCCATACCGTATACCCAAGAAAGCGT
TCACTGGGCGATTGGCAATGGTTTTATGGCCACTAATTCCCAAGATCTGT
CCGACTTCAGGCGCTTGAACCACAGCTTCTTGGGGCTGTGCATATCGGGT
CTCCGACTGCCAAGGAACTGGCTTCAGCGGCTCGGGGAGCCAATCCCTTC
TGGTATCCTCGTCGCTATAGTCGTTATAGTCGGGCCGTAGACCCACAGAG
TGTGCATGGACTTGGGCCCCACAAAGTGCCAACACTAGGAGCAACGGCTT
CATGTTGCCTCGTGCCGAATTCGGCACGAGCGAACATGGGTATTAGCCGC
GATAGTGCACACAAACGCCGGGCCACCGGAGGCAAGCGCAAGTCGCTCCG
CAAGAAGCGCAAGTTCGAGTTGGGACGCCCCGCCGCCAACACCAAGCTTG
GCTCCGGCCGCGTGCACAAGGTGCGCACCCGTGGTGGAAACACCAAGCTC
CGTGCTCTGCGCCTGGAAACCGGAAACTTCGCCTGGGCCTCCGAGGGAGT
GGCGCGCAAGACCCGTATCGCCGATGTTGTGTACAACGCCTCCAACAACG
AGCTGGTGCGAACCAAGACCTTGGTGAAGAACAGCATCGTGGTCATCGAT
GCCACGCCCTTCCGCCAGTGGTACGAGGCTCACTACGTGCTGCCCCTGGG
ACGCAAGCGTAACCCCAAGCACGCCCAGAAGGAGGACGAGAACGACGTGC
TGACCAAGAAGCGCAGCGAAAAGGTTATGAAGAAGTACCTGGAGCGCCAG
AAGTACGGCAAGGTCGAGCAGGCCCTCGAGGATCAGTTCACCTCCGGCCG
CATCTTGGCTTGCATTTCTTCCCGCCCCGGACAGTGCGGTCGCTCCGACG
GCTACATTTTGGAAGGCAAGGAGTTGGAATTCTACCTTAAGAAGATCAAG
TCTAAGAAATAAAGGCACTAGATAAGCTTGCAAGACATGATTTGCAAACA
AAAACGGAATAAAACAACTTGTTTTTTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

SD17528.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Glt.b 3399 Glt.b 142..1965 1858..35 9090 99.8 Minus
Glt-RA 3367 Glt-RA 110..1933 1858..35 9090 99.8 Minus
Glt.a 3420 Glt.a 163..1986 1858..35 9090 99.8 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:00:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 8672082..8673255 1858..685 5870 100 Minus
chr2L 23010047 chr2L 8673648..8674298 685..35 3240 99.8 Minus
chr3R 27901430 chr3R 25685263..25685676 1995..2408 2025 99.3 Plus
chr3R 27901430 chr3R 25685894..25686063 2408..2577 850 100 Plus
chr3R 27901430 chr3R 25684678..25684785 1889..1996 540 100 Plus
chr2L 23010047 chr2L 22098281..22098323 1..43 215 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:56:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8673197..8674370 1858..685 5855 99.9 Minus
2L 23513712 2L 8674763..8675413 685..35 3240 99.8 Minus
3R 32079331 3R 29862783..29863196 1995..2408 2055 99.8 Plus
3R 32079331 3R 29863414..29863584 2408..2578 855 100 Plus
3R 32079331 3R 29862198..29862305 1889..1996 540 100 Plus
2L 23513712 2L 22099752..22099794 1..43 215 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8673197..8674370 1858..685 5855 99.9 Minus
2L 23513712 2L 8674763..8675413 685..35 3240 99.8 Minus
3R 31820162 3R 29603614..29604027 1995..2408 2055 99.7 Plus
3R 31820162 3R 29604245..29604415 2408..2578 855 100 Plus
3R 31820162 3R 29603029..29603136 1889..1996 540 100 Plus
2L 23513712 2L 22099752..22099794 1..43 215 100 Plus
Blast to na_te.dros performed on 2019-03-15 20:00:24 has no hits.

SD17528.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:01:23 Download gff for SD17528.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 8672074..8673254 686..1867 99 -> Minus
chr2L 8673648..8674274 59..685 99 == Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:08:55 Download gff for SD17528.complete
Subject Subject Range Query Range Percent Splice Strand
RpS8-RC 1..627 1886..2512 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:33:34 Download gff for SD17528.complete
Subject Subject Range Query Range Percent Splice Strand
RpS8-RC 1..627 1886..2512 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:17:49 Download gff for SD17528.complete
Subject Subject Range Query Range Percent Splice Strand
RpS8-RC 1..627 1886..2512 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:25:06 Download gff for SD17528.complete
Subject Subject Range Query Range Percent Splice Strand
RpS8-RC 1..627 1886..2512 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:12:31 Download gff for SD17528.complete
Subject Subject Range Query Range Percent Splice Strand
RpS8-RE 1..627 1886..2512 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:04:25 Download gff for SD17528.complete
Subject Subject Range Query Range Percent Splice Strand
Glt-RA 102..1933 35..1867 99   Minus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:33:33 Download gff for SD17528.complete
Subject Subject Range Query Range Percent Splice Strand
Glt-RA 102..1933 35..1867 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:17:49 Download gff for SD17528.complete
Subject Subject Range Query Range Percent Splice Strand
Glt-RA 151..1982 35..1867 99   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:25:07 Download gff for SD17528.complete
Subject Subject Range Query Range Percent Splice Strand
Glt-RA 102..1933 35..1867 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:12:31 Download gff for SD17528.complete
Subject Subject Range Query Range Percent Splice Strand
Glt-RA 151..1982 35..1867 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:01:23 Download gff for SD17528.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8673189..8674369 686..1867 99 -> Minus
2L 8674763..8675416 33..685 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:01:23 Download gff for SD17528.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8673189..8674369 686..1867 99 -> Minus
2L 8674763..8675416 33..685 99 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:01:23 Download gff for SD17528.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8673189..8674369 686..1867 99 -> Minus
2L 8674763..8675416 33..685 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:17:49 Download gff for SD17528.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8673189..8674369 686..1867 99 -> Minus
arm_2L 8674763..8675416 33..685 99 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:57:32 Download gff for SD17528.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8673189..8674369 686..1867 99 -> Minus
2L 8674763..8675416 33..685 99 <- Minus

SD17528.hyp Sequence

Translation from 1102 to 1275

> SD17528.hyp
MLRHQPDPLGSPVPHCHRSGPHCVAATQEPIADRKGRRFQEARRLMRLGS
RMEPVGS*
Sequence SD17528.hyp has no blast hits.

SD17528.pep Sequence

Translation from 1885 to 2511

> SD17528.pep
MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGRVHKVRTRG
GNTKLRALRLETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNS
IVVIDATPFRQWYEAHYVLPLGRKRNPKHAQKEDENDVLTKKRSEKVMKK
YLERQKYGKVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFY
LKKIKSKK*

SD17528.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18798-PA 208 GF18798-PA 1..208 1..208 1085 99 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11702-PA 208 GG11702-PA 1..208 1..208 1093 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:26:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14312-PA 208 GH14312-PA 1..208 1..208 1071 97.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
RpS8-PG 208 CG7808-PG 1..208 1..208 1068 100 Plus
RpS8-PF 208 CG7808-PF 1..208 1..208 1068 100 Plus
RpS8-PE 208 CG7808-PE 1..208 1..208 1068 100 Plus
RpS8-PC 208 CG7808-PC 1..208 1..208 1068 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10411-PA 208 GI10411-PA 1..208 1..208 1066 97.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14033-PA 208 GL14033-PA 1..208 1..208 1065 96.6 Plus
Dper\GL10840-PA 208 GL10840-PA 1..208 1..208 1065 96.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20600-PA 208 GA20600-PA 1..208 1..208 1065 96.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12832-PA 208 GM12832-PA 1..208 1..208 1093 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21475-PA 208 GD21475-PA 1..208 1..208 1093 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10625-PA 208 GJ10625-PA 1..208 1..208 1068 97.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13918-PA 208 GK13918-PA 1..208 1..208 1073 97.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23892-PA 208 GE23892-PA 1..208 1..208 1088 99.5 Plus