Clone SD17981 Report

Search the DGRC for SD17981

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:179
Well:81
Vector:pOT2
Associated Gene/TranscriptCG42512-RA
Protein status:SD17981.pep: gold
Sequenced Size:1801

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG42512 2011-02-22 Manual selection by Sue Celniker

Clone Sequence Records

SD17981.complete Sequence

1801 bp assembled on 2011-03-18

GenBank Submission: BT126151.1

> SD17981.complete
CTCGTGTTATCGAAAGTTGTGTTGAAATTTCAGAAGTCATATTAAATTTG
TTTAAATACGCCGATGGGGACCGTTTTATTATGGAGAACAAAAATGATAT
AAAAGAAATGGACCTGGGCCTATCTCGAGCAGATATGTTGGAACAGCTCG
AAAAAAGGCGAATATTTCTGGGCGATGGCAAGGATATGCCGCTGGATCGT
CTGGAGGATATCTACCGCAATTACATAGTTCCCAAGCCAAAAAGAGAGCG
CAAGCCGCGCAATCCAAGTCCCGATCCCAATTTCAATCCCATTGAAATAG
AGCAGCTAGCGGAGCGCATCAAGTCGGTTGTCATAGTGGGACAGAAACGA
GCGCATGCAGAGAATAAGAGCGACGACCAGGCCAAGCAAATCAAGATGGA
CCTGGACTGACCTCATGCCGTTTGGCGATAGCCAATAATGGCTTTCCAAT
CACACTCTCAGCTTGACCAGTTAGCAAACAAAAGCGGCCAGCAAGATGAT
CCAGCTGCTCCAGTTGCTTCTATGTACTATTCCACTCGTTGTGGGCGAGG
TTCTGCCCCTGCAACTCGATTTGGACAACAGTCAAATTACCATACGGCGA
AGTGCCAGTCGCGATGACAAATTGCAGGTATTCCACAGCATCTGGGGCGC
CATTCGCTCCGACTTCGCCACCGATACGGACAAGGTGAAGGGCCTGTACA
GTCAGCTGGGCGGATTTATTCGCGACGATGTGCAGTGCAGCAGCGGCTCC
ACGGGTCGATCTGCCTGCGAGCTGCAGCAGGAGGTGCGACGCCACCTGCG
GACCCTCATGGCCCAGCGGCTGGCCAATCTGTTGAACGCCGAGGAGAGCA
TTCAGACATACGGTATGTACATAGCGGCCAGTGTGGAGCCCGCCCTGGTC
AGGGACATTCTGGTGCACGCCATCGAGGACGTGTACTTCCATCGACCGCT
GGAGAAGCTGGTGCAGCAGCTGGAGCAACTGTACGCGGATCGCGACGAGG
TCAACTTTCGCACGATGATCGAGGCGCAATTGGCGCTCTTCTGGCGCTAT
CAGGCCATGCAGGACAGCAGCGAGGCGTACCTGTTCAACGTCGCGCACAT
GGTCAGCAAGATCCGGAGCCATCACATGTACGCCAGCGTCGATGCGGATC
TCCAGAAGCGAGTGGAGGCACTGAGCCAACGTCTGCCGCCCGTTCTAGAC
TTGCTCTTCGATCCGCAGGGCTTCTGCCTGCTGAGTCGCTCCGATCGCGA
GTACATCTACACGACCATAACGGACGAGTGGAACTACGGTCTGAATGGGC
GGCAGATGTTCTCCTGGCGCGAGAAGAACTTCACCGATACCGCGGGCCTG
ACACGCGCCTTCGTCCAGGAGCAGCACTCCACGCCGCTCTTCACGCTGCG
TAGCGAGCTCTTCAAGTGGTACTACTTCGTCGATCCCAGCCAGGGCAATC
GCTTGGCCGCCCTGCGCTCCGGCAGTCCCAGCTCCTCGACCAGCACCTGG
ACCATCGCCTACGCGGGCGACGCACTCATCTTCCGGCAGCGCGAACTCAC
GCTCTGTGCTGCCGAAAAGTTCGACGACGATCGTCGTCTGGTGAAGATGC
TGCCCGGCCAGATGCACACGCCGCCATCGGAGGCTTGCCAGTGGCTACCG
ATCGCCTGTGCTCCGCCAAAATGAGCGGGATGGCTGTACCCTGGAATGTT
TGCAACAAATAAACTTATGCATTAGTGTATAAGTGTTTTTATTCCTAGCC
AGTCATGAATAATTAAATATATAATTTGTATTAAAAAAAAAAAAAAAAAA
A

SD17981.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16541764..16542960 586..1782 5910 99.6 Plus
chrX 22417052 chrX 16541272..16541701 156..585 2120 99.5 Plus
chrX 22417052 chrX 16541061..16541215 1..155 775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16652079..16653277 586..1784 5935 99.7 Plus
X 23542271 X 16651587..16652016 156..585 2135 99.8 Plus
X 23542271 X 16651376..16651530 1..155 775 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16660177..16661375 586..1784 5935 99.6 Plus
X 23527363 X 16659685..16660114 156..585 2135 99.7 Plus
X 23527363 X 16659474..16659628 1..155 775 100 Plus
Blast to na_te.dros performed on 2019-03-16 22:31:25 has no hits.

SD17981.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:32:15 Download gff for SD17981.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16541061..16541215 1..155 100 -> Plus
chrX 16541272..16541701 156..585 99 -> Plus
chrX 16541764..16542929 586..1751 99 -> Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-18 13:37:54 Download gff for SD17981.complete
Subject Subject Range Query Range Percent Splice Strand
CG32573-RC 1..1179 496..1674 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:56:51 Download gff for SD17981.complete
Subject Subject Range Query Range Percent Splice Strand
CG32573-RA 1..1179 496..1674 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:29:05 Download gff for SD17981.complete
Subject Subject Range Query Range Percent Splice Strand
CG32573-RA 1..1179 496..1674 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-18 13:37:53 Download gff for SD17981.complete
Subject Subject Range Query Range Percent Splice Strand
CG32573-RA 1..1782 1..1782 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:56:51 Download gff for SD17981.complete
Subject Subject Range Query Range Percent Splice Strand
CG32573-RA 1..1782 1..1782 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:05 Download gff for SD17981.complete
Subject Subject Range Query Range Percent Splice Strand
CG32573-RA 1..1782 1..1782 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:15 Download gff for SD17981.complete
Subject Subject Range Query Range Percent Splice Strand
X 16651376..16651530 1..155 100 -> Plus
X 16651587..16652016 156..585 99 -> Plus
X 16652079..16653275 586..1782 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:15 Download gff for SD17981.complete
Subject Subject Range Query Range Percent Splice Strand
X 16651376..16651530 1..155 100 -> Plus
X 16651587..16652016 156..585 99 -> Plus
X 16652079..16653275 586..1782 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:15 Download gff for SD17981.complete
Subject Subject Range Query Range Percent Splice Strand
X 16651376..16651530 1..155 100 -> Plus
X 16651587..16652016 156..585 99 -> Plus
X 16652079..16653275 586..1782 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:56:51 Download gff for SD17981.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16545409..16545563 1..155 100 -> Plus
arm_X 16545620..16546049 156..585 99 -> Plus
arm_X 16546112..16547308 586..1782 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:02:24 Download gff for SD17981.complete
Subject Subject Range Query Range Percent Splice Strand
X 16659685..16660114 156..585 99 -> Plus
X 16660177..16661373 586..1782 99   Plus
X 16659474..16659628 1..155 100 -> Plus

SD17981.pep Sequence

Translation from 80 to 409

> SD17981.pep
MENKNDIKEMDLGLSRADMLEQLEKRRIFLGDGKDMPLDRLEDIYRNYIV
PKPKRERKPRNPSPDPNFNPIEIEQLAERIKSVVIVGQKRAHAENKSDDQ
AKQIKMDLD*

SD17981.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22297-PA 117 GF22297-PA 1..109 10..108 165 38.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19063-PA 105 GG19063-PA 1..104 10..108 299 61.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24458-PA 125 GH24458-PA 21..98 13..90 140 35.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG42512-PB 100 CG42512-PB 1..100 10..109 515 100 Plus
CG42512-PA 100 CG42512-PA 1..100 10..109 515 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12884-PA 102 GL12884-PA 7..101 14..108 167 49 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22619-PA 102 GA22619-PA 7..101 14..108 170 49 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13453-PA 113 GM13453-PA 1..113 1..109 416 75.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17292-PA 113 GD17292-PA 1..113 1..109 425 77 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17284-PA 109 GE17284-PA 1..108 10..108 228 59.3 Plus

SD17981.hyp Sequence

Translation from 495 to 1673

> SD17981.hyp
MIQLLQLLLCTIPLVVGEVLPLQLDLDNSQITIRRSASRDDKLQVFHSIW
GAIRSDFATDTDKVKGLYSQLGGYIRDDVQCSSGSTGRSACELQQEVRRH
LRTLMAQRLANLLNAEESIQTYGMYIAASVEPALVRDILVHAIEDVYFHR
PLEKLVQQLEQLYADRDEVSFRTMIEAQLALFWRYQAMQDSSEAYLFNVA
HMVSKIRSHHMYASVDADLQKRVEALSQRLPPVLDLLFDPQGFCLLSRSD
REYIYTTITDEWNYGLNGRQMFSWREKNFTDTAGLTRAFVQEQHSTPLFT
LRSELFKWYYFVDPSQGNRLAALRSGSPSSSTSTWTIAYAGDALIFRQRE
LTLCAAEKFDDDRRLVKMLPGQMHTPPSEACQWLPIACAPPK*

SD17981.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG32573-PC 392 CG32573-PC 1..392 1..392 2033 100 Plus
CG32573-PA 392 CG32573-PA 1..392 1..392 2033 100 Plus