Clone SD19278 Report

Search the DGRC for SD19278

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:192
Well:78
Vector:pOT2
Associated Gene/TranscriptCG40042-RA
Protein status:SD19278.pep: gold
Sequenced Size:938

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18856 2002-01-01 Sim4 clustering to Release 2
CG40042 2002-05-18 Blastp of sequenced clone
CG40042 2003-01-01 Sim4 clustering to Release 3
CG40042 2008-04-29 Release 5.5 accounting
CG40042 2008-08-15 Release 5.9 accounting
CG40042 2008-12-18 5.12 accounting

Clone Sequence Records

SD19278.complete Sequence

938 bp (938 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119236

> SD19278.complete
ATTTTTAATTGTTCTGCAGTCATGCTGTCTCTAGTTTAATTTCCTGAATC
TAATGTGAAGAAACAGGAATGCTTGAACACAGATGTCACTTCTACAGGGG
AAAAAAGTTTAAAAACAAGTAAATCACAGAAAACGTCGTTTCCTTTTGCT
AATAGAGCGCCTGAATTCGGTGGAAATAGCAAAAATAATATATCACCATT
CTTGGGACTGCAAACAAATTCGAAAATGAGTGACAATTTTTCAAGAACAC
CATATTCTGATGGGCACGCTGCAACCCATGAGGAAGCATCAAAACCCCAC
TACACTACCACTACGAGTTCTTTTAGTAGAACTCCGGTCTCGCCGTACCT
CAACTATGATTCGCGATATCTGCAGCAAGCACAGCCAGAGTTCATTTTTC
CCGAAGGGGCCAACAAGCAGCGTGGACGCTTCGAGTTGGCCTTCTCTCAG
ATAGGCACTTCGGTAATGATTGGCGGTGGAATTGGCGGCCTAGCAGGTGT
TTATAATGGTTTAAAAGTCACAAAAGCACTCGAGCAGAAGGGAAAAGTTC
GTCGAACACAGTTACTTAATCACATTATGAAGCAAGGTTCCGGCACAGCT
AACACATTAGGTACATTGACGGTGCTGTATTCGGCTTGTGGAGTTTTGCT
GCAGTTTTTCCGCGGAGAAGATGATCATATAAACACAGTAATTGCGGGCT
CTGCCACAGGACTATTATACAAGTCAACAGCTGGCCTTAGGACGTGTGCT
TTTGGTGGAGCTATTGGGCTGGGCATCTCGTCCCTCTATTGCTTATACCT
AATAGCACAGGAAAACAGTTCGAACTCAAGTCCCAAATACCTATAGATGG
CTGAAATATGTAGTACGCAGGCATTAATAGGATCACTCCTAGCCGATTAA
AATTATAAATACGAAGTTTTAAAAAAAAAAAAAAAAAA

SD19278.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:48:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG40042-RA 1058 CG40042-RA 1..922 1..922 4610 100 Plus
CG40042.a 938 CG40042.a 1..730 1..730 3650 100 Plus
CG40042-RD 970 CG40042-RD 328..970 278..920 3215 100 Plus
CG40042-RD 970 CG40042-RD 1..279 1..279 1395 100 Plus
CG40042.a 938 CG40042.a 745..938 727..920 970 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:01:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2LHet 368865 chr2LHet 168492..168776 562..278 1425 100 Minus
chr2LHet 368865 chr2LHet 168875..169151 277..1 1355 99.3 Minus
chr2LHet 368865 chr2LHet 168011..168204 920..727 970 100 Minus
chr2LHet 368865 chr2LHet 168265..168434 730..561 850 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:56:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23312946..23313230 562..278 1425 100 Minus
2L 23513712 2L 23313329..23313605 277..1 1385 100 Minus
2L 23513712 2L 23312463..23312658 922..727 980 100 Minus
2L 23513712 2L 23312719..23312888 730..561 850 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 23312946..23313230 562..278 1425 100 Minus
2L 23513712 2L 23313329..23313605 277..1 1385 100 Minus
2L 23513712 2L 23312463..23312658 922..727 980 100 Minus
2L 23513712 2L 23312719..23312888 730..561 850 100 Minus
Blast to na_te.dros performed on 2019-03-15 20:01:07 has no hits.

SD19278.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:01:47 Download gff for SD19278.complete
Subject Subject Range Query Range Percent Splice Strand
chr2LHet 168011..168200 731..920 100 <- Minus
chr2LHet 168265..168434 561..730 100 <- Minus
chr2LHet 168494..168776 278..560 100 <- Minus
chr2LHet 168875..169151 1..277 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:09:20 Download gff for SD19278.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 1..621 226..846 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:42:58 Download gff for SD19278.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 1..621 226..846 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:18:17 Download gff for SD19278.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 1..621 226..846 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:21:57 Download gff for SD19278.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 1..621 226..846 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:13:21 Download gff for SD19278.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 1..621 226..846 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:50:16 Download gff for SD19278.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 1..920 1..920 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:42:58 Download gff for SD19278.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 1..920 1..920 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:18:17 Download gff for SD19278.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 1..893 28..920 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:21:57 Download gff for SD19278.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 1..920 1..920 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:13:21 Download gff for SD19278.complete
Subject Subject Range Query Range Percent Splice Strand
CG40042-RA 1..893 28..920 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:01:47 Download gff for SD19278.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23312465..23312654 731..920 100 <- Minus
2L 23312719..23312888 561..730 100 <- Minus
2L 23312948..23313230 278..560 100 <- Minus
2L 23313329..23313605 1..277 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:01:47 Download gff for SD19278.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23312465..23312654 731..920 100 <- Minus
2L 23312719..23312888 561..730 100 <- Minus
2L 23312948..23313230 278..560 100 <- Minus
2L 23313329..23313605 1..277 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:01:47 Download gff for SD19278.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23312465..23312654 731..920 100 <- Minus
2L 23312719..23312888 561..730 100 <- Minus
2L 23312948..23313230 278..560 100 <- Minus
2L 23313329..23313605 1..277 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:18:17 Download gff for SD19278.complete
Subject Subject Range Query Range Percent Splice Strand
2LHet 167980..168169 731..920 100 <- Minus
2LHet 168234..168403 561..730 100 <- Minus
2LHet 168463..168745 278..560 100 <- Minus
2LHet 168844..169120 1..277 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:56:36 Download gff for SD19278.complete
Subject Subject Range Query Range Percent Splice Strand
2L 23312948..23313230 278..560 100 <- Minus
2L 23313329..23313605 1..277 100   Minus
2L 23312465..23312654 731..920 100 <- Minus
2L 23312719..23312888 561..730 100 <- Minus

SD19278.pep Sequence

Translation from 225 to 845

> SD19278.pep
MSDNFSRTPYSDGHAATHEEASKPHYTTTTSSFSRTPVSPYLNYDSRYLQ
QAQPEFIFPEGANKQRGRFELAFSQIGTSVMIGGGIGGLAGVYNGLKVTK
ALEQKGKVRRTQLLNHIMKQGSGTANTLGTLTVLYSACGVLLQFFRGEDD
HINTVIAGSATGLLYKSTAGLRTCAFGGAIGLGISSLYCLYLIAQENSSN
SSPKYL*

SD19278.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16030-PA 206 GF16030-PA 1..206 1..206 859 83 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:27:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21415-PA 206 GG21415-PA 1..206 1..206 925 89.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13630-PA 209 GH13630-PA 1..209 1..206 791 76.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
Tim23-PA 206 CG40042-PA 1..206 1..206 1064 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11791-PA 209 GI11791-PA 1..209 1..206 775 77 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29086-PA 206 GA29086-PA 1..206 1..206 835 80.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11757-PA 206 GM11757-PA 1..206 1..206 1009 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:27:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17741-PA 206 GD17741-PA 1..206 1..206 1009 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13156-PA 210 GJ13156-PA 1..210 1..206 805 77.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:27:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15333-PA 206 GK15333-PA 1..206 1..206 820 79.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11375-PA 206 GE11375-PA 1..206 1..206 925 90.3 Plus

SD19278.hyp Sequence

Translation from 225 to 845

> SD19278.hyp
MSDNFSRTPYSDGHAATHEEASKPHYTTTTSSFSRTPVSPYLNYDSRYLQ
QAQPEFIFPEGANKQRGRFELAFSQIGTSVMIGGGIGGLAGVYNGLKVTK
ALEQKGKVRRTQLLNHIMKQGSGTANTLGTLTVLYSACGVLLQFFRGEDD
HINTVIAGSATGLLYKSTAGLRTCAFGGAIGLGISSLYCLYLIAQENSSN
SSPKYL*

SD19278.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG40042-PA 206 CG40042-PA 1..206 1..206 1064 100 Plus