Clone SD19435 Report

Search the DGRC for SD19435

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:194
Well:35
Vector:pOT2
Associated Gene/TranscriptPngl-RA
Protein status:SD19435.pep: gold
Preliminary Size:1842
Sequenced Size:2275

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7865 2002-01-01 Sim4 clustering to Release 2
CG7865 2002-05-18 Blastp of sequenced clone
CG7865 2003-01-01 Sim4 clustering to Release 3
PNGase 2008-04-29 Release 5.5 accounting
PNGase 2008-08-15 Release 5.9 accounting
PNGase 2008-12-18 5.12 accounting

Clone Sequence Records

SD19435.complete Sequence

2275 bp (2275 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119239

> SD19435.complete
TCACGGTCTCAGATTGCCTCTTACTCATGCCAGCCAAATGCTAGCTTTTT
TGGTGGAAAAAATAATAGAATAATACAAAAGGAATTTTCAGTTCTTTTCG
TCGCTTTATTATTAAGAAGCGGTTACAAGTATTTTAGTGGTATGACCTAA
TAAATATTGGGAGTTCCAAATCAAAACATTCTTCGATCGCTACTAACTAA
AAATGTGGCAGCTGGTCATCAACATGGTGGACATAAACTTGGAGTGCGTG
CACCAGATCGAACCGAAGACCCGTTCTGCTGGTCAGCAGCAGCAGGAGCG
AGGGTTAAAGGAAGCCTACCTGGAAGCGGTCCGCATTCTGTTAGTGCTGC
TGGAGAACATCTTGGCGCAGCCGGAGAACTCCATGTTCCGCACCATACGG
CAGGAAAACAAAGCTATTAAAGAAAAGCTGCTGTCCTTGCCCGGCTGTGA
GAGGTTACTGGAAGCCATAGGCTTCGTACGCGCCCCCAGTTCCAACGCCT
ACACCTTGCCCACAGAGGTGTCACTGCAGCAGGTGAAGAAGTACAGAGAT
GCGCTGAGCGAGAGACGCACTGCCTGGCTTAACGGCACAGTGTCAAAAAG
TCCTCCTCAACAAAGCACCACCAGCACCACGCCCTTGTTCATCAAGCCTT
CTGTGGAATATCGCCATAGAATCGCCTTCCCCCGTGTATTGCGCACCAAT
AATAACTTTCTGCAGTCGCTAGAGCTTTATTCCGATGCAGTCATGCAGTA
CGAGGATAACCTGCTGCTGGCTACTGGCCGCACTCTGATTCCTGTGGAAG
AGCTCACCGAAATGGCAAGCGAGAAACTGATAGACATCCAAGATCAAATT
GCGTCGGGTGAGCGCCAGGAGAAGGAGCCATGTGTTCGCGACTTGCTGCT
TGTGGAGCTGGTAAACTGGTTCAACACGCAGTTCTTCCAGTGGGTAAACA
ATATACCTTGCCGCGTGTGTGGGAGTGAAGAGAGCAGGCTGCGCCGCACT
GAACGGGAAGGTGATATAAGGGTGGAAGTCACCGTTTGCTGCGGCCAGGA
GAGCAAGTTCTACCGCTATAACGACATTTCCCAGCTCCTAGTTTCCCGTA
AGGGCCGTTGCGGAGAATATGCCAATTGCTTCACATTCCTCTGTCGCGCC
CTCGACTACGACGCCCGTATTGTCCACTCGCATTTTGATCACGTCTGGAC
CGAGGTGTACTCCGAGGCCCAGATGCGTTGGCTCCATGTTGACCCCTCCG
AGAACGTTATAGATTCTCCGCTGATGTATCAGCATGGCTGGAAACGTCAC
ATCGACTACATTCTTGCATACTCTAGGGACGACATCCAAGATGTGACTTG
GCGCTATACTAATGACCACCAGAAGATTCTACACCTACGAAAGCTGTGCG
GGGAAAAAGAAATGGTGCAAACGCTGGACGCGATTCGAGCAAAGCGGCGG
CAAAATTGCACCGCCGATCGAAAGTTATTCCTCAGCCAGCGCAATATGTA
CGAGGTCATCGGCTTGACGCTAGAGCGTAAGCCGACAGAAAACGAGCTGA
AGGGTCGGAGTTCGGGAAGTCTTTCTTGGCGGCAGTCACGTGGAGAGCAT
ACTTTTACCAATATATTCGTTTTCAATCTAAGTGCAACCGAACTACAAAA
AAGGCAACTTAATGTGCGTTACAGCTGTGCCACCGATACATACGAACGAT
ATGCCAAAGAAGGAGAACACATCACTATTTTGGATAGCTATAAGACATGG
CAAAAAGCGCAATTTTCCTCAAAGAACATATTTCGGAAAGTGGAACGCGA
TTGGAAAATGGCATATTTGGCTAGACTGGAGGATACCGATTGCGGAGAAA
TTGCCTGGACGTTTGATTTCAGCAAGACCAATTTAAAGGTTAAGTCTTAC
AACTTAGTTTTCGAGACAAAAACTTTTGGCGACGGAAAAATCAGCGTGAC
TGTCGATGCCACCGACGGAAGCGCTTCGGTTGAAAATGCCACTGGATTCA
AAATAGTGGCCAAACTTACGGGTGGCAAGGGCGATGTAGCATGGCAACAC
ACACAACTGTTCAGGCAGAGTCTTAATTCAAGAGACTATCCCTTCGATCT
GCAAGTGCAACTACATTGAAGTCCTCAAAAAATATTTTGGAGAAATTAAA
ATGTAATTGTAAATAATATAAACGATTCCCAGTCTGGATGAAAATATAAT
AATTAAAAATGTATATTAAAAATTAAATAAAGGCACATAGTGTCGCTATA
TGTAAAAAAAAAAAAAAAAAAAAAA

SD19435.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:00:19
Subject Length Description Subject Range Query Range Score Percent Strand
PNGase-RB 2260 PNGase-RB 1..2255 1..2255 11260 99.9 Plus
PNGase-RA 2293 PNGase-RA 172..2222 205..2255 10240 99.9 Plus
PNGase.a 2163 PNGase.a 594..2158 691..2255 7810 99.9 Plus
PNGase.a 2163 PNGase.a 97..584 205..692 2440 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 1905604..1906440 691..1527 4185 100 Plus
chr2R 21145070 chr2R 1906787..1907336 1704..2253 2720 99.6 Plus
chr2R 21145070 chr2R 1905001..1905397 205..601 1970 99.7 Plus
chr2R 21145070 chr2R 1901006..1901149 1..144 720 100 Plus
chr2R 21145070 chr2R 1906640..1906736 1613..1709 485 100 Plus
chr2R 21145070 chr2R 1905451..1905542 600..691 460 100 Plus
chr2R 21145070 chr2R 1906495..1906580 1527..1612 430 100 Plus
chr2R 21145070 chr2R 1904532..1904593 144..205 310 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:56:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6018417..6019253 691..1527 4185 100 Plus
2R 25286936 2R 6019600..6020151 1704..2255 2730 99.6 Plus
2R 25286936 2R 6017814..6018210 205..601 1985 100 Plus
2R 25286936 2R 6013822..6013965 1..144 720 100 Plus
2R 25286936 2R 6019453..6019549 1613..1709 485 100 Plus
2R 25286936 2R 6018264..6018355 600..691 460 100 Plus
2R 25286936 2R 6019308..6019393 1527..1612 430 100 Plus
2R 25286936 2R 6017345..6017406 144..205 310 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 6019616..6020452 691..1527 4185 100 Plus
2R 25260384 2R 6020799..6021350 1704..2255 2730 99.6 Plus
2R 25260384 2R 6019013..6019409 205..601 1985 100 Plus
2R 25260384 2R 6015021..6015164 1..144 720 100 Plus
2R 25260384 2R 6020652..6020748 1613..1709 485 100 Plus
2R 25260384 2R 6019463..6019554 600..691 460 100 Plus
2R 25260384 2R 6020507..6020592 1527..1612 430 100 Plus
2R 25260384 2R 6018544..6018605 144..205 310 100 Plus
Blast to na_te.dros performed 2019-03-15 14:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1a 5108 Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). 5020..5072 445..395 125 73.6 Minus

SD19435.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:41:46 Download gff for SD19435.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 1904533..1904593 145..205 100 -> Plus
chr2R 1901006..1901149 1..144 100 -> Plus
chr2R 1905002..1905395 206..599 99 -> Plus
chr2R 1905451..1905542 600..691 100 -> Plus
chr2R 1905605..1906440 692..1527 100 -> Plus
chr2R 1906496..1906580 1528..1612 100 -> Plus
chr2R 1906640..1906736 1613..1709 100 -> Plus
chr2R 1906793..1907336 1710..2253 92   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:09:23 Download gff for SD19435.complete
Subject Subject Range Query Range Percent Splice Strand
PNGase-RB 1..1917 203..2119 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:40:28 Download gff for SD19435.complete
Subject Subject Range Query Range Percent Splice Strand
Pngl-RB 1..1917 203..2119 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:39:29 Download gff for SD19435.complete
Subject Subject Range Query Range Percent Splice Strand
Pngl-RA 1..1896 224..2119 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:32:23 Download gff for SD19435.complete
Subject Subject Range Query Range Percent Splice Strand
PNGase-RB 1..1917 203..2119 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:06:36 Download gff for SD19435.complete
Subject Subject Range Query Range Percent Splice Strand
Pngl-RA 1..1896 224..2119 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:14:04 Download gff for SD19435.complete
Subject Subject Range Query Range Percent Splice Strand
PNGase-RB 1..2253 1..2253 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:40:28 Download gff for SD19435.complete
Subject Subject Range Query Range Percent Splice Strand
Pngl-RB 1..2253 1..2253 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:39:29 Download gff for SD19435.complete
Subject Subject Range Query Range Percent Splice Strand
Pngl-RA 70..2124 197..2253 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:32:23 Download gff for SD19435.complete
Subject Subject Range Query Range Percent Splice Strand
PNGase-RB 1..2253 1..2253 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:06:36 Download gff for SD19435.complete
Subject Subject Range Query Range Percent Splice Strand
Pngl-RA 70..2124 197..2253 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:41:46 Download gff for SD19435.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6013822..6013965 1..144 100 -> Plus
2R 6017346..6017406 145..205 100 -> Plus
2R 6017815..6018208 206..599 100 -> Plus
2R 6018264..6018355 600..691 100 -> Plus
2R 6018418..6019253 692..1527 100 -> Plus
2R 6019309..6019393 1528..1612 100 -> Plus
2R 6019453..6019549 1613..1709 100 -> Plus
2R 6019606..6020149 1710..2253 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:41:46 Download gff for SD19435.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6013822..6013965 1..144 100 -> Plus
2R 6017346..6017406 145..205 100 -> Plus
2R 6017815..6018208 206..599 100 -> Plus
2R 6018264..6018355 600..691 100 -> Plus
2R 6018418..6019253 692..1527 100 -> Plus
2R 6019309..6019393 1528..1612 100 -> Plus
2R 6019453..6019549 1613..1709 100 -> Plus
2R 6019606..6020149 1710..2253 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:41:46 Download gff for SD19435.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6013822..6013965 1..144 100 -> Plus
2R 6017346..6017406 145..205 100 -> Plus
2R 6017815..6018208 206..599 100 -> Plus
2R 6018264..6018355 600..691 100 -> Plus
2R 6018418..6019253 692..1527 100 -> Plus
2R 6019309..6019393 1528..1612 100 -> Plus
2R 6019453..6019549 1613..1709 100 -> Plus
2R 6019606..6020149 1710..2253 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:39:29 Download gff for SD19435.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1905320..1905713 206..599 100 -> Plus
arm_2R 1905769..1905860 600..691 100 -> Plus
arm_2R 1901327..1901470 1..144 100 -> Plus
arm_2R 1904851..1904911 145..205 100 -> Plus
arm_2R 1905923..1906758 692..1527 100 -> Plus
arm_2R 1906814..1906898 1528..1612 100 -> Plus
arm_2R 1906958..1907054 1613..1709 100 -> Plus
arm_2R 1907111..1907654 1710..2253 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:04:49 Download gff for SD19435.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6019014..6019407 206..599 100 -> Plus
2R 6019463..6019554 600..691 100 -> Plus
2R 6019617..6020452 692..1527 100 -> Plus
2R 6020508..6020592 1528..1612 100 -> Plus
2R 6020652..6020748 1613..1709 100 -> Plus
2R 6020805..6021348 1710..2253 99   Plus
2R 6015021..6015164 1..144 100 -> Plus
2R 6018545..6018605 145..205 100 -> Plus

SD19435.hyp Sequence

Translation from 202 to 2118

> SD19435.hyp
MWQLVINMVDINLECVHQIEPKTRSAGQQQQERGLKEAYLEAVRILLVLL
ENILAQPENSMFRTIRQENKAIKEKLLSLPGCERLLEAIGFVRAPSSNAY
TLPTEVSLQQVKKYRDALSERRTAWLNGTVSKSPPQQSTTSTTPLFIKPS
VEYRHRIAFPRVLRTNNNFLQSLELYSDAVMQYEDNLLLATGRTLIPVEE
LTEMASEKLIDIQDQIASGERQEKEPCVRDLLLVELVNWFNTQFFQWVNN
IPCRVCGSEESRLRRTEREGDIRVEVTVCCGQESKFYRYNDISQLLVSRK
GRCGEYANCFTFLCRALDYDARIVHSHFDHVWTEVYSEAQMRWLHVDPSE
NVIDSPLMYQHGWKRHIDYILAYSRDDIQDVTWRYTNDHQKILHLRKLCG
EKEMVQTLDAIRAKRRQNCTADRKLFLSQRNMYEVIGLTLERKPTENELK
GRSSGSLSWRQSRGEHTFTNIFVFNLSATELQKRQLNVRYSCATDTYERY
AKEGEHITILDSYKTWQKAQFSSKNIFRKVERDWKMAYLARLEDTDCGEI
AWTFDFSKTNLKVKSYNLVFETKTFGDGKISVTVDATDGSASVENATGFK
IVAKLTGGKGDVAWQHTQLFRQSLNSRDYPFDLQVQLH*

SD19435.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Pngl-PC 631 CG7865-PC 1..631 8..638 3306 100 Plus
Pngl-PA 631 CG7865-PA 1..631 8..638 3306 100 Plus

SD19435.pep Sequence

Translation from 202 to 2118

> SD19435.pep
MWQLVINMVDINLECVHQIEPKTRSAGQQQQERGLKEAYLEAVRILLVLL
ENILAQPENSMFRTIRQENKAIKEKLLSLPGCERLLEAIGFVRAPSSNAY
TLPTEVSLQQVKKYRDALSERRTAWLNGTVSKSPPQQSTTSTTPLFIKPS
VEYRHRIAFPRVLRTNNNFLQSLELYSDAVMQYEDNLLLATGRTLIPVEE
LTEMASEKLIDIQDQIASGERQEKEPCVRDLLLVELVNWFNTQFFQWVNN
IPCRVCGSEESRLRRTEREGDIRVEVTVCCGQESKFYRYNDISQLLVSRK
GRCGEYANCFTFLCRALDYDARIVHSHFDHVWTEVYSEAQMRWLHVDPSE
NVIDSPLMYQHGWKRHIDYILAYSRDDIQDVTWRYTNDHQKILHLRKLCG
EKEMVQTLDAIRAKRRQNCTADRKLFLSQRNMYEVIGLTLERKPTENELK
GRSSGSLSWRQSRGEHTFTNIFVFNLSATELQKRQLNVRYSCATDTYERY
AKEGEHITILDSYKTWQKAQFSSKNIFRKVERDWKMAYLARLEDTDCGEI
AWTFDFSKTNLKVKSYNLVFETKTFGDGKISVTVDATDGSASVENATGFK
IVAKLTGGKGDVAWQHTQLFRQSLNSRDYPFDLQVQLH*

SD19435.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:16:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11040-PA 632 GF11040-PA 1..632 8..638 2689 77.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23191-PA 633 GG23191-PA 1..633 8..638 3150 92.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21476-PA 620 GH21476-PA 1..620 8..638 2567 73.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
Pngl-PC 631 CG7865-PC 1..631 8..638 3306 100 Plus
Pngl-PA 631 CG7865-PA 1..631 8..638 3306 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:16:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19953-PA 630 GI19953-PA 1..630 8..638 2573 73.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:16:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16697-PA 632 GL16697-PA 1..632 8..638 2715 77.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20643-PA 632 GA20643-PA 1..632 8..638 2723 78.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:16:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16531-PA 631 GM16531-PA 1..631 8..638 3360 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:16:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10391-PA 631 GD10391-PA 1..631 8..638 3360 98.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17865-PA 630 GJ17865-PA 1..630 8..638 2486 72 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22046-PA 639 GK22046-PA 1..639 8..638 2554 72.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20670-PA 631 GE20670-PA 1..631 8..638 3100 91 Plus