Clone SD19533 Report

Search the DGRC for SD19533

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:195
Well:33
Vector:pOT2
Associated Gene/TranscriptSnx16-RA
Protein status:SD19533.pep: gold
Preliminary Size:1312
Sequenced Size:1670

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6410 2002-09-18 Blastp of sequenced clone
CG6410 2003-01-01 Sim4 clustering to Release 3
CG6410 2008-04-29 Release 5.5 accounting
CG6410 2008-08-15 Release 5.9 accounting
CG6410 2008-12-18 5.12 accounting

Clone Sequence Records

SD19533.complete Sequence

1670 bp (1670 high quality bases) assembled on 2002-09-18

GenBank Submission: BT001897

> SD19533.complete
AGCAATTTCGTTTTGGGAAATTTTCAAAGTCATGTAGCAAACTAGACGCT
ACAGCGAAATCAAGATAAACAAAGCAATGTCACTGCGTGCGCTTCGGAAA
AGAGAAACAGGCACTGGCTACGGCAACAATAACAACCATTTAGCAGCACC
AGCAAGAACTTCACAAGCAACGCTCTTTAAGAAGGCCAGCACAGCAATAA
CGTCACCGAAGAAATCGTTGCTCAAAACTGGGAACTCCGTCTGCGGATTG
GACAAACGGAGCCAGTTCCGGGAGCAGAAGCTACTCGGTCGCAAGTGCCA
CTCGAGTCCTGACCTACGACAAATCGGAAAATACCAAAACAACAGCCTGT
TGCGCAGCAAATCGGAGGGGGATGTTAGTTTAATCCTGGCCAGTAACTCC
GGTGCTCCATTGACGGTGGCAAACGCCAAGTCAGAGGTTTGCCTGCAAAG
GATTAGCTCTCACAGTTACGAACAATCTCCGAGAACGCCGATAAACAAAA
GCGAAATGCTCGGCGGTGCACGTTCCCATCGCGACCTGACGCAGTCGTCC
TATGGCAACCAGGCAGGTGGACATTCCGTGGATTTGGAATCCAGGTCTAG
AACTCCTCGGCGGATGAGCGAGTGCAGCTTGGGCTACAGCCAATCCAGCT
CCCGGCACACTGGCTCCAACTCTATGTTCGCCAGCCAGATGACTCTCTCC
TCGGGATCGGTGGTGCCGCCCGTGGACCCCAACGCTGTGCTAAGGGTGCC
CATTATTGGTTACGAGGTTATGGAGGAACGTGCGCGTTTCACTGCCTACA
AGCTGCGAGTCGAGAATCCGGAGACCAACGACTATTGGCTTGTTATGCGA
CGCTACACCGACTTCGTGCGGCTCAATAGCAAGCTAAAGCAGGCTTTTCC
CAACCTTACGCTCATGCTGCCCCGGAAGAAGCTTTTCGGCGATAACTTCA
ATGCCGTCTTTCTCGACAATCGGGTGCAAGGTCTGCAGATCTTCGTCAAC
TCAGTGATGGCCAAGGAGGAGCTGCGAAAGTGCAAACTGGTTCGGGAGTT
CTTCTGCCTGGACGAGCCGCCTTCGTACTCTGAATCCATGGAGGAGTGTC
GTGCAATTTTCGAAGCTCAGGAGGAGACAATTGAGCATCTGAAGCTGCAG
ATTCGAAATAAAAACGATCTCATTCTCAGTTTGCAGCAGAAACTGCGCGA
GGAGATGAACGAGAAGGAGCAGCTGAGAGAAGCTATGAAAAATATGGAGC
TTAATTGCTCGCACTGCTCCTCAGCTAGCGACAGTTTGGGAATAAAGTAG
ACCTTCGCCAATCGGAGGTGATAACCAAAATCCAGTTGGACGTGCGTGTG
CGTACAACATTATGCTGAGCATAACTCTACGCAACTGCGCCGCTTGGATG
CAAATCCAATACAATAATACAAACCAAGTGCATATCGAGGGGTTGGCCCC
TACAGTGCTTTAGTATTCATATCTAGACCTAGATGCTAGCAAAATGCTGC
CCACGCTGGTACTATATGGAATACGATAGTAGATATTTTTGATATTCGTT
TACGAGGCACTTACAGTTAAGAATGAAATCACTAGACTAAGTGTATACGA
TATGTTATGCAAACTCACATACAAAATAAATCTAAGGCACAATTTATTAC
TCAAAAAAAAAAAAAAAAAA

SD19533.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6410-RA 1791 CG6410-RA 138..1791 1..1654 8195 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13612839..13613941 1103..1 5500 99.9 Minus
chr2R 21145070 chr2R 13612171..13612583 1652..1240 2035 99.5 Minus
chr2R 21145070 chr2R 13612643..13612779 1239..1103 685 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:56:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17725698..17726800 1103..1 5455 99.6 Minus
2R 25286936 2R 17725028..17725442 1654..1240 2060 99.8 Minus
2R 25286936 2R 17725502..17725638 1239..1103 685 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:15:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17726897..17727999 1103..1 5455 99.6 Minus
2R 25260384 2R 17726227..17726641 1654..1240 2060 99.7 Minus
2R 25260384 2R 17726701..17726837 1239..1103 685 100 Minus
Blast to na_te.dros performed 2019-03-15 23:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 1349..1388 1168..1127 115 78.6 Minus

SD19533.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:09:54 Download gff for SD19533.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13612171..13612583 1240..1652 99 <- Minus
chr2R 13612643..13612779 1103..1239 100 <- Minus
chr2R 13612840..13613941 1..1102 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:09:25 Download gff for SD19533.complete
Subject Subject Range Query Range Percent Splice Strand
CG6410-RA 1..1224 77..1300 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:14:45 Download gff for SD19533.complete
Subject Subject Range Query Range Percent Splice Strand
CG6410-RA 1..1224 77..1300 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:29:25 Download gff for SD19533.complete
Subject Subject Range Query Range Percent Splice Strand
Snx16-RA 1..1224 77..1300 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:05:45 Download gff for SD19533.complete
Subject Subject Range Query Range Percent Splice Strand
CG6410-RA 1..1224 77..1300 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:20:57 Download gff for SD19533.complete
Subject Subject Range Query Range Percent Splice Strand
Snx16-RA 1..1224 77..1300 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:38:00 Download gff for SD19533.complete
Subject Subject Range Query Range Percent Splice Strand
CG6410-RA 1..1652 1..1652 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:14:44 Download gff for SD19533.complete
Subject Subject Range Query Range Percent Splice Strand
CG6410-RA 1..1652 1..1652 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:29:25 Download gff for SD19533.complete
Subject Subject Range Query Range Percent Splice Strand
Snx16-RA 48..1699 1..1652 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:05:45 Download gff for SD19533.complete
Subject Subject Range Query Range Percent Splice Strand
CG6410-RA 1..1652 1..1652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:20:57 Download gff for SD19533.complete
Subject Subject Range Query Range Percent Splice Strand
Snx16-RA 48..1699 1..1652 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:09:54 Download gff for SD19533.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17725030..17725442 1240..1652 99 <- Minus
2R 17725502..17725638 1103..1239 100 <- Minus
2R 17725699..17726800 1..1102 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:09:54 Download gff for SD19533.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17725030..17725442 1240..1652 99 <- Minus
2R 17725502..17725638 1103..1239 100 <- Minus
2R 17725699..17726800 1..1102 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:09:54 Download gff for SD19533.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17725030..17725442 1240..1652 99 <- Minus
2R 17725502..17725638 1103..1239 100 <- Minus
2R 17725699..17726800 1..1102 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:29:25 Download gff for SD19533.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13612535..13612947 1240..1652 99 <- Minus
arm_2R 13613007..13613143 1103..1239 100 <- Minus
arm_2R 13613204..13614305 1..1102 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:37:36 Download gff for SD19533.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17726229..17726641 1240..1652 99 <- Minus
2R 17726701..17726837 1103..1239 100 <- Minus
2R 17726898..17727999 1..1102 99   Minus

SD19533.hyp Sequence

Translation from 76 to 1299

> SD19533.hyp
MSLRALRKRETGTGYGNNNNHLAAPARTSQATLFKKASTAITSPKKSLLK
TGNSVCGLDKRSQFREQKLLGRKCHSSPDLRQIGKYQNNSLLRSKSEGDV
SLILASNSGAPLTVANAKSEVCLQRISSHSYEQSPRTPINKSEMLGGARS
HRDLTQSSYGNQAGGHSVDLESRSRTPRRMSECSLGYSQSSSRHTGSNSM
FASQMTLSSGSVVPPVDPNAVLRVPIIGYEVMEERARFTAYKLRVENPET
NDYWLVMRRYTDFVRLNSKLKQAFPNLTLMLPRKKLFGDNFNAVFLDNRV
QGLQIFVNSVMAKEELRKCKLVREFFCLDEPPSYSESMEECRAIFEAQEE
TIEHLKLQIRNKNDLILSLQQKLREEMNEKEQLREAMKNMELNCSHCSSA
SDSLGIK*

SD19533.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:33:56
Subject Length Description Subject Range Query Range Score Percent Strand
Snx16-PA 407 CG6410-PA 1..407 1..407 2076 100 Plus
CG8726-PB 646 CG8726-PB 13..130 215..340 159 35.4 Plus

SD19533.pep Sequence

Translation from 76 to 1299

> SD19533.pep
MSLRALRKRETGTGYGNNNNHLAAPARTSQATLFKKASTAITSPKKSLLK
TGNSVCGLDKRSQFREQKLLGRKCHSSPDLRQIGKYQNNSLLRSKSEGDV
SLILASNSGAPLTVANAKSEVCLQRISSHSYEQSPRTPINKSEMLGGARS
HRDLTQSSYGNQAGGHSVDLESRSRTPRRMSECSLGYSQSSSRHTGSNSM
FASQMTLSSGSVVPPVDPNAVLRVPIIGYEVMEERARFTAYKLRVENPET
NDYWLVMRRYTDFVRLNSKLKQAFPNLTLMLPRKKLFGDNFNAVFLDNRV
QGLQIFVNSVMAKEELRKCKLVREFFCLDEPPSYSESMEECRAIFEAQEE
TIEHLKLQIRNKNDLILSLQQKLREEMNEKEQLREAMKNMELNCSHCSSA
SDSLGIK*

SD19533.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13231-PA 392 GF13231-PA 1..386 1..402 1528 77.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21026-PA 406 GG21026-PA 1..406 1..407 2058 95.3 Plus
Dere\GG10690-PA 645 GG10690-PA 13..148 215..367 169 31.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:59:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20252-PA 402 GH20252-PA 1..402 1..407 1136 58.5 Plus
Dgri\GH12937-PA 250 GH12937-PA 1..250 144..407 951 71.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
Snx16-PA 407 CG6410-PA 1..407 1..407 2076 100 Plus
CG8726-PB 646 CG8726-PB 13..130 215..340 159 35.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19421-PA 392 GI19421-PA 1..392 1..407 1313 64.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17676-PA 410 GL17676-PA 1..410 1..407 1519 75.2 Plus
Dper\GL10606-PA 660 GL10606-PA 13..130 215..340 160 34.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30487-PA 391 GA30487-PA 1..391 1..407 1389 71.3 Plus
Dpse\GA21283-PA 662 GA21283-PA 13..130 215..340 159 34.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19956-PA 407 GM19956-PA 1..407 1..407 2132 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25447-PA 407 GD25447-PA 1..407 1..407 2111 97.3 Plus
Dsim\GD10203-PA 646 GD10203-PA 13..130 215..340 172 36.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22485-PA 401 GJ22485-PA 1..401 1..407 1253 62.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22952-PA 391 GK22952-PA 1..389 1..394 1291 67.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13969-PA 408 GE13969-PA 1..408 1..407 2023 94.4 Plus
Dyak\GE23432-PA 642 GE23432-PA 13..130 215..340 163 34.6 Plus