BDGP Sequence Production Resources |
Search the DGRC for SD19533
Library: | SD |
Tissue Source: | Drosophila melanogaster Schneider L2 cell culture |
Created by: | Ling Hong |
Date Registered: | 1999-02-25 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 195 |
Well: | 33 |
Vector: | pOT2 |
Associated Gene/Transcript | Snx16-RA |
Protein status: | SD19533.pep: gold |
Preliminary Size: | 1312 |
Sequenced Size: | 1670 |
Gene | Date | Evidence |
---|---|---|
CG6410 | 2002-09-18 | Blastp of sequenced clone |
CG6410 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6410 | 2008-04-29 | Release 5.5 accounting |
CG6410 | 2008-08-15 | Release 5.9 accounting |
CG6410 | 2008-12-18 | 5.12 accounting |
1670 bp (1670 high quality bases) assembled on 2002-09-18
GenBank Submission: BT001897
> SD19533.complete AGCAATTTCGTTTTGGGAAATTTTCAAAGTCATGTAGCAAACTAGACGCT ACAGCGAAATCAAGATAAACAAAGCAATGTCACTGCGTGCGCTTCGGAAA AGAGAAACAGGCACTGGCTACGGCAACAATAACAACCATTTAGCAGCACC AGCAAGAACTTCACAAGCAACGCTCTTTAAGAAGGCCAGCACAGCAATAA CGTCACCGAAGAAATCGTTGCTCAAAACTGGGAACTCCGTCTGCGGATTG GACAAACGGAGCCAGTTCCGGGAGCAGAAGCTACTCGGTCGCAAGTGCCA CTCGAGTCCTGACCTACGACAAATCGGAAAATACCAAAACAACAGCCTGT TGCGCAGCAAATCGGAGGGGGATGTTAGTTTAATCCTGGCCAGTAACTCC GGTGCTCCATTGACGGTGGCAAACGCCAAGTCAGAGGTTTGCCTGCAAAG GATTAGCTCTCACAGTTACGAACAATCTCCGAGAACGCCGATAAACAAAA GCGAAATGCTCGGCGGTGCACGTTCCCATCGCGACCTGACGCAGTCGTCC TATGGCAACCAGGCAGGTGGACATTCCGTGGATTTGGAATCCAGGTCTAG AACTCCTCGGCGGATGAGCGAGTGCAGCTTGGGCTACAGCCAATCCAGCT CCCGGCACACTGGCTCCAACTCTATGTTCGCCAGCCAGATGACTCTCTCC TCGGGATCGGTGGTGCCGCCCGTGGACCCCAACGCTGTGCTAAGGGTGCC CATTATTGGTTACGAGGTTATGGAGGAACGTGCGCGTTTCACTGCCTACA AGCTGCGAGTCGAGAATCCGGAGACCAACGACTATTGGCTTGTTATGCGA CGCTACACCGACTTCGTGCGGCTCAATAGCAAGCTAAAGCAGGCTTTTCC CAACCTTACGCTCATGCTGCCCCGGAAGAAGCTTTTCGGCGATAACTTCA ATGCCGTCTTTCTCGACAATCGGGTGCAAGGTCTGCAGATCTTCGTCAAC TCAGTGATGGCCAAGGAGGAGCTGCGAAAGTGCAAACTGGTTCGGGAGTT CTTCTGCCTGGACGAGCCGCCTTCGTACTCTGAATCCATGGAGGAGTGTC GTGCAATTTTCGAAGCTCAGGAGGAGACAATTGAGCATCTGAAGCTGCAG ATTCGAAATAAAAACGATCTCATTCTCAGTTTGCAGCAGAAACTGCGCGA GGAGATGAACGAGAAGGAGCAGCTGAGAGAAGCTATGAAAAATATGGAGC TTAATTGCTCGCACTGCTCCTCAGCTAGCGACAGTTTGGGAATAAAGTAG ACCTTCGCCAATCGGAGGTGATAACCAAAATCCAGTTGGACGTGCGTGTG CGTACAACATTATGCTGAGCATAACTCTACGCAACTGCGCCGCTTGGATG CAAATCCAATACAATAATACAAACCAAGTGCATATCGAGGGGTTGGCCCC TACAGTGCTTTAGTATTCATATCTAGACCTAGATGCTAGCAAAATGCTGC CCACGCTGGTACTATATGGAATACGATAGTAGATATTTTTGATATTCGTT TACGAGGCACTTACAGTTAAGAATGAAATCACTAGACTAAGTGTATACGA TATGTTATGCAAACTCACATACAAAATAAATCTAAGGCACAATTTATTAC TCAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6410-RA | 1791 | CG6410-RA | 138..1791 | 1..1654 | 8195 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 13612839..13613941 | 1103..1 | 5500 | 99.9 | Minus |
chr2R | 21145070 | chr2R | 13612171..13612583 | 1652..1240 | 2035 | 99.5 | Minus |
chr2R | 21145070 | chr2R | 13612643..13612779 | 1239..1103 | 685 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 17725698..17726800 | 1103..1 | 5455 | 99.6 | Minus |
2R | 25286936 | 2R | 17725028..17725442 | 1654..1240 | 2060 | 99.8 | Minus |
2R | 25286936 | 2R | 17725502..17725638 | 1239..1103 | 685 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 17726897..17727999 | 1103..1 | 5455 | 99.6 | Minus |
2R | 25260384 | 2R | 17726227..17726641 | 1654..1240 | 2060 | 99.7 | Minus |
2R | 25260384 | 2R | 17726701..17726837 | 1239..1103 | 685 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
invader6 | 4885 | invader6 INVADER6 4885bp | 1349..1388 | 1168..1127 | 115 | 78.6 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 13612171..13612583 | 1240..1652 | 99 | <- | Minus |
chr2R | 13612643..13612779 | 1103..1239 | 100 | <- | Minus |
chr2R | 13612840..13613941 | 1..1102 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6410-RA | 1..1224 | 77..1300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6410-RA | 1..1224 | 77..1300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snx16-RA | 1..1224 | 77..1300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6410-RA | 1..1224 | 77..1300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snx16-RA | 1..1224 | 77..1300 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6410-RA | 1..1652 | 1..1652 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6410-RA | 1..1652 | 1..1652 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snx16-RA | 48..1699 | 1..1652 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6410-RA | 1..1652 | 1..1652 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snx16-RA | 48..1699 | 1..1652 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17725030..17725442 | 1240..1652 | 99 | <- | Minus |
2R | 17725502..17725638 | 1103..1239 | 100 | <- | Minus |
2R | 17725699..17726800 | 1..1102 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17725030..17725442 | 1240..1652 | 99 | <- | Minus |
2R | 17725502..17725638 | 1103..1239 | 100 | <- | Minus |
2R | 17725699..17726800 | 1..1102 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17725030..17725442 | 1240..1652 | 99 | <- | Minus |
2R | 17725502..17725638 | 1103..1239 | 100 | <- | Minus |
2R | 17725699..17726800 | 1..1102 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 13612535..13612947 | 1240..1652 | 99 | <- | Minus |
arm_2R | 13613007..13613143 | 1103..1239 | 100 | <- | Minus |
arm_2R | 13613204..13614305 | 1..1102 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17726229..17726641 | 1240..1652 | 99 | <- | Minus |
2R | 17726701..17726837 | 1103..1239 | 100 | <- | Minus |
2R | 17726898..17727999 | 1..1102 | 99 | Minus |
Translation from 76 to 1299
> SD19533.hyp MSLRALRKRETGTGYGNNNNHLAAPARTSQATLFKKASTAITSPKKSLLK TGNSVCGLDKRSQFREQKLLGRKCHSSPDLRQIGKYQNNSLLRSKSEGDV SLILASNSGAPLTVANAKSEVCLQRISSHSYEQSPRTPINKSEMLGGARS HRDLTQSSYGNQAGGHSVDLESRSRTPRRMSECSLGYSQSSSRHTGSNSM FASQMTLSSGSVVPPVDPNAVLRVPIIGYEVMEERARFTAYKLRVENPET NDYWLVMRRYTDFVRLNSKLKQAFPNLTLMLPRKKLFGDNFNAVFLDNRV QGLQIFVNSVMAKEELRKCKLVREFFCLDEPPSYSESMEECRAIFEAQEE TIEHLKLQIRNKNDLILSLQQKLREEMNEKEQLREAMKNMELNCSHCSSA SDSLGIK*
Translation from 76 to 1299
> SD19533.pep MSLRALRKRETGTGYGNNNNHLAAPARTSQATLFKKASTAITSPKKSLLK TGNSVCGLDKRSQFREQKLLGRKCHSSPDLRQIGKYQNNSLLRSKSEGDV SLILASNSGAPLTVANAKSEVCLQRISSHSYEQSPRTPINKSEMLGGARS HRDLTQSSYGNQAGGHSVDLESRSRTPRRMSECSLGYSQSSSRHTGSNSM FASQMTLSSGSVVPPVDPNAVLRVPIIGYEVMEERARFTAYKLRVENPET NDYWLVMRRYTDFVRLNSKLKQAFPNLTLMLPRKKLFGDNFNAVFLDNRV QGLQIFVNSVMAKEELRKCKLVREFFCLDEPPSYSESMEECRAIFEAQEE TIEHLKLQIRNKNDLILSLQQKLREEMNEKEQLREAMKNMELNCSHCSSA SDSLGIK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13231-PA | 392 | GF13231-PA | 1..386 | 1..402 | 1528 | 77.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21026-PA | 406 | GG21026-PA | 1..406 | 1..407 | 2058 | 95.3 | Plus |
Dere\GG10690-PA | 645 | GG10690-PA | 13..148 | 215..367 | 169 | 31.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20252-PA | 402 | GH20252-PA | 1..402 | 1..407 | 1136 | 58.5 | Plus |
Dgri\GH12937-PA | 250 | GH12937-PA | 1..250 | 144..407 | 951 | 71.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Snx16-PA | 407 | CG6410-PA | 1..407 | 1..407 | 2076 | 100 | Plus |
CG8726-PB | 646 | CG8726-PB | 13..130 | 215..340 | 159 | 35.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19421-PA | 392 | GI19421-PA | 1..392 | 1..407 | 1313 | 64.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17676-PA | 410 | GL17676-PA | 1..410 | 1..407 | 1519 | 75.2 | Plus |
Dper\GL10606-PA | 660 | GL10606-PA | 13..130 | 215..340 | 160 | 34.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA30487-PA | 391 | GA30487-PA | 1..391 | 1..407 | 1389 | 71.3 | Plus |
Dpse\GA21283-PA | 662 | GA21283-PA | 13..130 | 215..340 | 159 | 34.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19956-PA | 407 | GM19956-PA | 1..407 | 1..407 | 2132 | 98.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25447-PA | 407 | GD25447-PA | 1..407 | 1..407 | 2111 | 97.3 | Plus |
Dsim\GD10203-PA | 646 | GD10203-PA | 13..130 | 215..340 | 172 | 36.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22485-PA | 401 | GJ22485-PA | 1..401 | 1..407 | 1253 | 62.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22952-PA | 391 | GK22952-PA | 1..389 | 1..394 | 1291 | 67.6 | Plus |