Clone SD19625 Report

Search the DGRC for SD19625

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:196
Well:25
Vector:pOT2
Associated Gene/TranscriptATPsyn-beta-RB
Protein status:SD19625.pep: wuzgold
Sequenced Size:1755

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
ATPsyn-beta-RB 2010-01-13 Manual selection by Sue Celniker

Clone Sequence Records

SD19625.complete Sequence

1755 bp assembled on 2010-02-12

GenBank Submission: BT120330.1

> SD19625.complete
TTAGTTCGAGAAAAATGTTCGCGTTACGTGCTGCATCTAAAGCCGATAAG
AATTTGCTGCCATTCTTGGGGCAATTGTCTCGTAGCCATGCTGCCAAGGC
TGCAAAGGCTGCAGCTGCCGCAAATGGAAAGATTGTGGCCGTAATTGGTG
CAGTCGTCGATGTCCAGTTTGATGATAACTTACCGCCCATTCTGAATGCC
TTGGAAGTAGACAACCGTTCTCCTCGGCTCGTGCTAGAGGTGGCCCAGCA
CTTGGGAGAAAATACCGTGCGCACTATCGCCATGGATGGTACCGAAGGCT
TGGTTCGCGGACAGAAGGTTCTCGATACTGGGTATCCTATCCGAATTCCA
GTTGGTGCCGAAACACTAGGACGCATCATTAATGTTATTGGTAAGTAAAT
TATATTAAAACATAAGAAAGAAATTAAGAAATTCTTTGAACAGGTGAACC
CATTGATGAGCGTGGACCAATTGATACAGACAAGACCGCTGCCATTCATG
CTGAGGCTCCTGAATTCGTTCAGATGTCTGTTGAGCAAGAGATTCTTGTC
ACTGGAATCAAAGTCGTCGATCTCCTGGCTCCATACGCCAAAGGTGGTAA
AATTGGGTTGTTTGGAGGTGCCGGTGTGGGCAAAACTGTGTTGATCATGG
AGCTCATTAACAACGTGGCTAAAGCTCATGGTGGATACTCGGTTTTCGCG
GGAGTTGGTGAACGCACTCGTGAGGGAAACGATTTATACAATGAGATGAT
CGAGGGTGGTGTTATTTCACTAAAGGACAAGACCTCAAAGGTGGCTCTCG
TATATGGGCAAATGAACGAGCCGCCAGGTGCTCGTGCCCGTGTTGCTCTA
ACTGGACTGACCGTTGCAGAGTACTTCCGTGATCAAGAAGGACAGGATGT
GTTGCTGTTTATCGACAACATTTTCCGATTTACTCAAGCTGGCTCAGAAG
TGTCCGCTTTGTTGGGTCGTATTCCCTCAGCCGTCGGTTACCAGCCAACC
TTGGCTACCGACATGGGTTCTATGCAGGAGCGTATTACCACCACCAAAAA
GGGATCCATTACTTCTGTTCAGGCCATATATGTGCCCGCTGATGATTTGA
CCGATCCTGCTCCTGCTACTACATTCGCTCATTTGGATGCCACCACTGTA
CTCTCGCGTGCGATTGCCGAACTGGGTATTTACCCTGCTGTGGATCCACT
GGATTCGACTTCTCGAATCATGGATCCCAACATCATTGGCCAAGAACACT
ATAACGTTGCCCGTGGTGTGCAGAAAATCTTGCAAGACTACAAATCACTT
CAGGATATAATAGCCATTCTCGGAATGGATGAGTTGTCTGAGGAAGATAA
GCTCACAGTCGCTCGTGCTCGCAAGATTCAGCGTTTCTTGTCGCAGCCAT
TCCAAGTTGCTGAAGTCTTCACCGGGCATGCTGGTAAACTAGTGCCCCTG
GAGCAAACTATAAAAGGTTTCTCAGCAATTCTAGCTGGGGACTACGACCA
TCTACCTGAAGTTGCTTTCTACATGGTCGGCCCAATCGAAGAAGTTGTAG
AAAAGGCTGACCGCCTGGCAAAGGAAGCTGCCTAGATAGGCGTACTGGAA
AAATCTTCAAAGTCAGCAAATCTATCATTGAATATTATGCATTGAATTTG
TAATAAACTTTGTAAGATCAAATTAAATTCAATACAAGCGAAGAAAAAGT
TAATAAAACCTATTTAAACATTACGGTATGAAAAAAAAAAAAAAAAAAAA
AAAAA

SD19625.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-beta.g 1833 ATPsyn-beta.g 88..1819 1..1732 8660 100 Plus
ATPsyn-beta.h 2158 ATPsyn-beta.h 88..1819 1..1732 8660 100 Plus
ATPsyn-beta.j 2547 ATPsyn-beta.j 776..2065 443..1732 6450 100 Plus
ATPsyn-beta.j 2547 ATPsyn-beta.j 387..778 1..392 1960 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
chr4 1351717 chr4 1053426..1055077 79..1730 8260 100 Plus
chr3L 24539361 chr3L 16088556..16089475 534..1453 1120 74.8 Plus
chr4 1351717 chr4 1052390..1052467 1..78 390 100 Plus
chr3R 27901430 chr3R 15744707..15744789 681..763 205 83.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:57:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:34:07
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1032907..1034560 79..1732 8270 100 Plus
3L 28110227 3L 16098790..16099709 534..1453 1120 74.8 Plus
4 1348131 4 1031876..1031953 1..78 390 100 Plus
3R 32079331 3R 19920789..19920871 681..763 205 83.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
4 1331231 4 1032907..1034560 79..1732 8270 100 Plus
3L 28103327 3L 16092139..16092584 783..1228 625 76 Plus
4 1331231 4 1031876..1031953 1..78 390 100 Plus
3L 28103327 3L 16091890..16092110 534..754 325 76.4 Plus
3L 28103327 3L 16092645..16092809 1289..1453 315 79.3 Plus
3R 31820162 3R 19661620..19661702 681..763 205 83.1 Plus
Blast to na_te.dros performed 2019-03-16 11:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
R1A1-element 5356 R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). 627..694 1081..1148 115 63.2 Plus

SD19625.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:35:24 Download gff for SD19625.complete
Subject Subject Range Query Range Percent Splice Strand
chr4 1052390..1052467 1..78 100 -> Plus
chr4 1053426..1055077 79..1730 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-02-12 09:06:27 Download gff for SD19625.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 1..370 15..384 100 == Plus
ATPsyn-beta-RA 371..1518 436..1585 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:27:19 Download gff for SD19625.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 1..370 15..384 100 == Plus
ATPsyn-beta-RA 371..1518 436..1585 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:46:44 Download gff for SD19625.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 1..370 15..384 100 == Plus
ATPsyn-beta-RA 371..1518 436..1585 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:20:31 Download gff for SD19625.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 1..370 15..384 100 == Plus
ATPsyn-beta-RA 371..1518 436..1585 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-12 09:06:26 Download gff for SD19625.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 63..446 1..384 100 == Plus
ATPsyn-beta-RA 447..1730 436..1721 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:27:19 Download gff for SD19625.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RA 63..446 1..384 100 == Plus
ATPsyn-beta-RA 447..1730 436..1721 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:46:44 Download gff for SD19625.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RB 13..1741 1..1729 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:20:31 Download gff for SD19625.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-beta-RD 13..396 1..384 100 == Plus
ATPsyn-beta-RD 397..1689 436..1730 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:24 Download gff for SD19625.complete
Subject Subject Range Query Range Percent Splice Strand
4 1031876..1031953 1..78 100 -> Plus
4 1032907..1034558 79..1730 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:24 Download gff for SD19625.complete
Subject Subject Range Query Range Percent Splice Strand
4 1031876..1031953 1..78 100 -> Plus
4 1032907..1034558 79..1730 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:35:24 Download gff for SD19625.complete
Subject Subject Range Query Range Percent Splice Strand
4 1031876..1031953 1..78 100 -> Plus
4 1032907..1034558 79..1730 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:46:44 Download gff for SD19625.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 1052502..1052579 1..78 100 -> Plus
arm_4 1053533..1055184 79..1730 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:13:38 Download gff for SD19625.complete
Subject Subject Range Query Range Percent Splice Strand
4 1032907..1034558 79..1730 100   Plus
4 1031876..1031953 1..78 100 -> Plus

SD19625.pep Sequence

Translation from 14 to 397

> SD19625.pep
MFALRAASKADKNLLPFLGQLSRSHAAKAAKAAAAANGKIVAVIGAVVDV
QFDDNLPPILNALEVDNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQ
KVLDTGYPIRIPVGAETLGRIINVIGK*

SD19625.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 12:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21882-PA 506 GF21882-PA 1..128 1..127 573 93.8 Plus
Dana\GF23766-PA 638 GF23766-PA 105..195 37..126 286 64.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 12:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16404-PA 505 GG16404-PA 1..127 1..127 643 99.2 Plus
Dere\GG15949-PA 630 GG15949-PA 105..195 37..126 265 60.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 12:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23965-PA 506 GH23965-PA 1..128 1..127 618 96.1 Plus
Dgri\GH16852-PA 659 GH16852-PA 121..211 37..126 287 64.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:54
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsynbeta-PD 505 CG11154-PD 1..127 1..127 620 99.2 Plus
ATPsynbeta-PA 505 CG11154-PA 1..127 1..127 620 99.2 Plus
ATPsynbeta-PC 511 CG11154-PC 1..133 1..127 603 94.7 Plus
ATPsynbetaL-PA 622 CG5389-PA 104..193 38..126 267 62.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 12:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14045-PA 506 GI14045-PA 1..128 1..127 560 91.4 Plus
Dmoj\GI13073-PA 618 GI13073-PA 71..161 37..126 291 64.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 12:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18400-PA 506 GL18400-PA 1..128 1..127 569 93 Plus
Dper\GL25088-PA 661 GL25088-PA 112..202 37..126 282 63 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 12:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\ATPsyn-beta-PA 506 GA10801-PA 1..128 1..127 569 93 Plus
Dpse\GA18845-PA 675 GA18845-PA 129..219 37..126 280 62 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 12:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13022-PA 387 GM13022-PA 1..127 1..127 642 99.2 Plus
Dsec\GM25584-PA 625 GM25584-PA 107..196 38..126 267 62.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 12:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\ATPsyn-beta-PA 439 GD24417-PA 22..61 88..127 200 95 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 12:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\ATPsyn-beta-PA 506 GJ13622-PA 1..128 1..127 559 93 Plus
Dvir\GJ13823-PA 611 GJ13823-PA 42..132 37..126 277 60.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 12:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13685-PA 506 GK13685-PA 1..128 1..127 564 91.4 Plus
Dwil\GK24170-PA 685 GK24170-PA 118..208 37..126 294 64.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 12:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\ATPsyn-beta-PA 505 GE14564-PA 1..127 1..127 639 98.4 Plus
Dyak\GE23170-PA 627 GE23170-PA 82..195 24..126 266 50 Plus
Dyak\GE22293-PA 627 GE22293-PA 105..195 37..126 265 60.4 Plus

SD19625.hyp Sequence

Translation from 523 to 1584

> SD19625.hyp
MSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK
AHGGYSVFAGVGERTREGNDLYNEMIEGGVISLKDKTSKVALVYGQMNEP
PGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRI
PSAVGYQPTLATDMGSMQERITTTKKGSITSVQAIYVPADDLTDPAPATT
FAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIIGQEHYNVARGVQ
KILQDYKSLQDIIAILGMDELSEEDKLTVARARKIQRFLSQPFQVAEVFT
GHAGKLVPLEQTIKGFSAILAGDYDHLPEVAFYMVGPIEEVVEKADRLAK
EAA*

SD19625.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-beta-PD 505 CG11154-PD 153..505 1..353 1765 100 Plus
ATPsyn-beta-PA 505 CG11154-PA 153..505 1..353 1765 100 Plus
ATPsyn-beta-PC 511 CG11154-PC 159..511 1..353 1765 100 Plus
ms(3)72Dt-PA 622 CG5389-PA 220..568 1..349 1492 81.9 Plus
Vha68-3-PA 743 CG5075-PA 349..644 8..291 297 29.4 Plus