Clone SD20374 Report

Search the DGRC for SD20374

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:203
Well:74
Vector:pOT2
Associated Gene/TranscriptCG33108-RB
Protein status:SD20374.pep: gold
Sequenced Size:1709

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG33108-RB 2011-02-22 Manual selection by Sue Celniker

Clone Sequence Records

SD20374.complete Sequence

1709 bp assembled on 2011-03-18

GenBank Submission: BT126150.1

> SD20374.complete
TTTGTCTGCGAAAACAGCTGTGGCTATTGTCTGTTAACTCGCTTAGTCTA
TTTATTTAACTAAATACCATGTCGAATATTTCAAGTGTGGCACCACCTCC
TCCCCCACCACCCATGATAGTCACTCCTAGCACACCTGCTACCACAAAGG
AACGTCCAGTTGGGGACAATATAACCACCGATGAGTGCACTTGGGCATGT
GAGTATCCTGAGGTGCAGAAAGGATGCTATTTAAGTCGCGTCTGCCAATA
TACACCACCGAAACACTGTCAATACTACTCCGTAAACAGCATAGTGCAGG
TGGGACCTACTTGTGGCTTAGTGGCCCTCAGCATGTTGCTTGGTGGCAGT
CCCACGGCAGATGATCTCCTCAAGGATGCAATCGACCAGGAGTATACCCT
TAATGGTGAACTATTTAGTGCTCAGTATTTGTTTGAACTGACCCGGAAGC
ATATGCCAGGACCTGCTGCGTGTCAGTTGCATGTAGGTCCTTTGGACTGC
AAAAAAGTCAAGGAACTTTTAAAGGCCGGAGGCTGCCTACTAGTGCCGTA
TCCTTTTTCAAAAATATTGCCATTTAAACCCGGGTTGAGTTTGGTATTCC
CCTGCATTTAAAGCCGTTGGCGCCTAACAGCACTTGTAAACGGTGAACAG
CACACTGTTGTCTGGCAGTGTTGTAAAACTCGCGGTAGTTCAGTGGTGCA
ACTTATAAACAGCGTTTTGTGTTTCGCAAAATAATATACAATTTTCAGTC
AGTAAGTAAACGAGAAGTGCAAATACTTTTATTAAATGGCCGACGAAACA
GAGCAGGTATGTGTAAGAATAAAAGCGAAAAGGATATTCTCTATATTCCG
TACTTGCAGCTCAGTCAGGTGATTTTGCCGGTAAAGGAGCCTTTGGATCT
CATCCGATTGAGTTTAGATGAGAAGGTGTACGTAAAGATGCGCAACGAGC
GGGAACTGCGAGGACGTCTTCACGCCTTTGATCAGCATTTGAACATGGTG
CTCGGCGATGCGGAGGAGACGGTGACCACTGTGGAGATCGACGAGGAGAC
CTATGAGGAGGTGTACAAGACCGCCAAGCGCACTATTCCCATGCTATTCG
TTAGAGGCGATGGAGTCATCCTGGTTTCGCCACCCATGCGGGTGGGCTAG
CGGGTCTTGTTTAGCTTTAAATCAATTACCTGCATTTATACAAGCTATAT
CTAAATAGGTTTATAAATGTCTTTTAAAAAAAATAATGTCTTGTTTAATT
TTTGCTTACTATATAAATATATAAAAATCTTTTCTATGGGTTGTCCTTAA
TCAATTGTAATTTCAAAAGCTACGATGCCGATGTAAACCATGCGCCATGC
GTTAAAAATGGACACCGAGCCCATTGGGCTTTGATTGTAGGTTATCTGGT
GGACACGCAGGACCGGTTTTATGTCCTGGCTCGTCATGGTAAATCTCGTA
ACCTAGCCGTTTGGCCACTGGACACGCTCAGCCAAAGCAACGAAAATTTA
AAAGAGTTTGCCCAACCCAAGGGCTACCCAGATGATGAGTTTCTGCTGCC
ACCGGGTGGAATCGGTGGATCTCTGGGCCTCAACGAGCGCTGCATTCTTG
TCAACGGGCTGCCAAAGCAGGTGATTCATGTTCGCTGGTCCTAAATATGT
GCATCGAAATATTTTCAATAAAAAAAAACCTTTTTTAATTAAAAAAAAAA
AAAAAAAAA

SD20374.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 19819427..19820103 298..974 3385 100 Plus
chr3R 27901430 chr3R 19820163..19820605 974..1416 2215 100 Plus
chr3R 27901430 chr3R 19819065..19819366 1..302 1510 100 Plus
chr3R 27901430 chr3R 19820663..19820938 1416..1690 1270 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:31:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23996030..23996706 298..974 3385 100 Plus
3R 32079331 3R 23996766..23997208 974..1416 2215 100 Plus
3R 32079331 3R 23995668..23995969 1..302 1510 100 Plus
3R 32079331 3R 23997266..23997542 1416..1691 1275 98.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 23736861..23737537 298..974 3385 100 Plus
3R 31820162 3R 23737597..23738039 974..1416 2215 100 Plus
3R 31820162 3R 23736499..23736800 1..302 1510 100 Plus
3R 31820162 3R 23738097..23738373 1416..1691 1295 98.9 Plus
Blast to na_te.dros performed on 2019-03-16 22:31:22 has no hits.

SD20374.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:32:14 Download gff for SD20374.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 19819065..19819363 1..299 100 -> Plus
chr3R 19820163..19820605 974..1416 100 -> Plus
chr3R 19819429..19820102 300..973 100 -> Plus
chr3R 19820664..19820938 1417..1690 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-18 12:58:44 Download gff for SD20374.complete
Subject Subject Range Query Range Percent Splice Strand
CG33108-RB 1..543 69..611 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:56:47 Download gff for SD20374.complete
Subject Subject Range Query Range Percent Splice Strand
CG33108-RB 1..543 69..611 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:29:02 Download gff for SD20374.complete
Subject Subject Range Query Range Percent Splice Strand
CG33108-RB 1..543 69..611 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-18 12:58:43 Download gff for SD20374.complete
Subject Subject Range Query Range Percent Splice Strand
CG33108-RB 1..714 3..716 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:56:47 Download gff for SD20374.complete
Subject Subject Range Query Range Percent Splice Strand
CG33108-RB 10..725 1..716 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:02 Download gff for SD20374.complete
Subject Subject Range Query Range Percent Splice Strand
CG33108-RB 10..725 1..716 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:14 Download gff for SD20374.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23997267..23997541 1417..1690 98   Plus
3R 23996766..23997208 974..1416 100 -> Plus
3R 23995668..23995966 1..299 100 -> Plus
3R 23996032..23996705 300..973 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:14 Download gff for SD20374.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23997267..23997541 1417..1690 98   Plus
3R 23996766..23997208 974..1416 100 -> Plus
3R 23995668..23995966 1..299 100 -> Plus
3R 23996032..23996705 300..973 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:14 Download gff for SD20374.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23997267..23997541 1417..1690 98   Plus
3R 23996766..23997208 974..1416 100 -> Plus
3R 23995668..23995966 1..299 100 -> Plus
3R 23996032..23996705 300..973 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:56:47 Download gff for SD20374.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19821390..19821688 1..299 100 -> Plus
arm_3R 19821754..19822427 300..973 100 -> Plus
arm_3R 19822488..19822930 974..1416 100 -> Plus
arm_3R 19822989..19823263 1417..1690 98   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:02:16 Download gff for SD20374.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23736499..23736797 1..299 100 -> Plus
3R 23736863..23737536 300..973 100 -> Plus
3R 23737597..23738039 974..1416 100 -> Plus
3R 23738098..23738372 1417..1690 98   Plus

SD20374.pep Sequence

Translation from 68 to 610

> SD20374.pep
MSNISSVAPPPPPPPMIVTPSTPATTKERPVGDNITTDECTWACEYPEVQ
KGCYLSRVCQYTPPKHCQYYSVNSIVQVGPTCGLVALSMLLGGSPTADDL
LKDAIDQEYTLNGELFSAQYLFELTRKHMPGPAACQLHVGPLDCKKVKEL
LKAGGCLLVPYPFSKILPFKPGLSLVFPCI*

SD20374.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17032-PA 301 GF17032-PA 22..171 21..176 544 69.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18482-PA 264 GH18482-PA 33..160 34..161 461 64.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG33108-PB 180 CG33108-PB 1..180 1..180 983 100 Plus
CG33108-PA 267 CG33108-PA 1..161 1..161 880 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:31:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24143-PA 268 GI24143-PA 27..164 24..161 460 59.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23392-PA 267 GL23392-PA 17..163 18..161 538 69.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29224-PA 167 GA29224-PA 21..75 24..78 220 72.7 Plus
Dpse\GA30188-PA 159 GA30188-PA 1..55 109..161 210 72.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26548-PA 267 GM26548-PA 1..161 1..161 778 95.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24658-PA 266 GJ24658-PA 34..162 33..161 479 65.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14178-PA 256 GK14178-PA 38..175 37..176 451 59.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23437-PA 267 GE23437-PA 1..161 1..161 670 85.7 Plus

SD20374.hyp Sequence

Translation from 68 to 610

> SD20374.hyp
MSNISSVAPPPPPPPMIVTPSTPATTKERPVGDNITTDECTWACEYPEVQ
KGCYLSRVCQYTPPKHCQYYSVNSIVQVGPTCGLVALSMLLGGSPTADDL
LKDAIDQEYTLNGELFSAQYLFELTRKHMPGPAACQLHVGPLDCKKVKEL
LKAGGCLLVPYPFSKILPFKPGLSLVFPCI*

SD20374.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG33108-PB 180 CG33108-PB 1..180 1..180 983 100 Plus
CG33108-PA 267 CG33108-PA 1..161 1..161 880 100 Plus