Clone SD20537 Report

Search the DGRC for SD20537

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:205
Well:37
Vector:pOT2
Associated Gene/Transcriptspz-RK
Protein status:SD20537.pep: gold
Preliminary Size:1267
Sequenced Size:1777

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6134 2002-11-07 Blastp of sequenced clone
spz 2008-04-29 Release 5.5 accounting
spz 2008-08-15 Release 5.9 accounting
spz 2008-12-18 5.12 accounting
CG6134 2011-03-01 Transcript Validation

Clone Sequence Records

SD20537.complete Sequence

1777 bp (1777 high quality bases) assembled on 2002-11-07

GenBank Submission: BT001898

> SD20537.complete
CAGAGCCGAAAAGTTGAAGACTCACATATCCTGCGATCAGCTACTTGGAT
AGCCCATTGCCCAGTTGCAAGCCAAATCGGTTATAAACGATATCAATATC
GCGGCATTTCATCAGAGCAACCAAATCGAACCGATCCGAAAACGGTTCCA
CTAAAGCGGCGAGAGCGAAACTAAAGTGAAAAGCAAACCGACTAATTGAA
GTGTCTGTCTGTGTGTCTCGCAAACGTGCAAAGGAAACAAACAAAACGGA
ATAGCCAACATATCACACAGAGCCACCGCACAAAATATTTATAAATAAAT
AAGAGGCAACAGTAACACCAGCTACCAGTATAAAGGCCCGGCATTAACAT
TTAGTCGTGCCAGTTTGTTTATTTTTTATATACGCAAAGCCCATAAAAAG
AAAAAAACGCACAGATCACTAAAAAACAACAGCAGCCGGCGCTATAATAA
CAAAGTTGTAGAAATAAGAAAATTGGTATAAGACGCCACCGATCCGCCAA
TCACCTGCTATATACTATTACTAATCCCCGACGCAGACGTTCGCCGTCCG
CAGAATCTATATATATTTATAAATCCAATTGATTAAGCCCGAGATCGAGC
ATGATGACGCCCATGTGGATATCGCTGTTCAAAGTCCTGCTGCTGCTGTT
CGCCTTCTTTGCCACGATAGTTTATATCAATATCGAATTAACGAAGCGAC
ACGAGGCCGAGGTGAGGGCAGAGAAAACAGTGGCAGACTATAAGGCCCTT
TTGGCTACCATTAACAATGGCGGACCCGGAAAGTCAGCATCTAATCACTT
ACAGTACGAGGCCAAGGAGTATGAACGTATCATCAAAGAGCTTTTTACAA
TAACCAATGATGAGGGAGTTGTCCTCTTTAATAGGACGGACACGGAGGTG
CAATCCGAACAGCCGATACCCCCCCGACATCCATCGGATACCAAGTATCG
GCCACCACAATCCCCAGCTCGTCCTTTGAGGAATGACACTAAGGAGCACA
ATCCCTGCGCCAAGGATGAAAGCCAACACCTTAGAAACTTCTGCACGAAT
GTGGACGACTATCCGGACCTTTCAGGCCTCACACATAAGCTAAAAAACAA
CTTCGCCAAGTTCTTTAGCAACGATCTTCAGCCCACGGATGTGAGCTCTC
GCGTTGGTGGCTCAGATGAGCGATTCCTTTGCAGGAGCATCAGGAAGCTG
GTGTACCCAAAAAAGGGCTTGAGGGCGGACGACACCTGGCAGTTAATTGT
CAATAACGATGAGTACAAACAGGCCATCCAGATCGAAGAGTGCGAAGGAG
CGGATCAACCCTGTGACTTTGCCGCCAACTTTCCGCAGAGCTATAATCCA
ATCTGCAAGCAGCACTACACACAGCAGACCCTGGCCAGCATCAAGAGTGA
TGGCGAACTGGACGTGGTGCAGAATTCCTTCAAGATCCCCTCCTGCTGCA
AGTGCGCGTTGAAGACTGGGTGATTCTGGAAAATGGGATTCTCCAGTCGA
TGGCTGCGACAATGTGATATTGAGCAAGAAGTTTCACCCACCACAGAATG
GCAGGCCAAACTGATCAGTGGTCATTGATTTATTCTATAATCTGCTGAAT
CCACACATAGACTAATGTGCATATTAATTTAGAGCTTTAAGTCGAGTCAT
TTTAACCATATTCGTGTCATATATTCATTTTTGGCTTCCACGTCTAATGC
CTAAGCTAGAAATGCAAGTAATTAGTCCTAGAATACAAACAAAACAAAAC
ACAAAACACAAAAAAAAAAAAAAAAAA

SD20537.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
spz-RK 2207 spz-RK 355..2131 1..1777 8720 99.3 Plus
spz-RD 1985 spz-RD 1149..1985 941..1777 4020 98.6 Plus
spz-RD 1985 spz-RD 260..1063 1..804 4020 100 Plus
spz-RA 2411 spz-RA 1501..2337 941..1777 4020 98.6 Plus
spz-RA 2411 spz-RA 453..1118 1..666 3330 100 Plus
spz-RA 2411 spz-RA 1118..1197 804..883 400 100 Plus
spz-RD 1985 spz-RD 1064..1123 883..942 300 100 Plus
spz-RA 2411 spz-RA 1416..1475 883..942 300 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:02:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22892191..22892860 666..1 3225 99.1 Minus
chr3R 27901430 chr3R 22889144..22889498 1295..941 1730 99.2 Minus
chr3R 27901430 chr3R 22888133..22888369 1759..1523 1170 99.6 Minus
chr3R 27901430 chr3R 22888848..22889076 1524..1296 1130 99.6 Minus
chr3R 27901430 chr3R 22890403..22890541 804..666 695 100 Minus
chr3R 27901430 chr3R 22890167..22890249 882..800 415 100 Minus
chr3R 27901430 chr3R 22889646..22889710 947..883 295 96.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:57:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27069144..27069809 666..1 3330 100 Minus
3R 32079331 3R 27066099..27066453 1295..941 1730 99.2 Minus
3R 32079331 3R 27065070..27065324 1777..1523 1200 98 Minus
3R 32079331 3R 27065803..27066031 1524..1296 1100 98.7 Minus
3R 32079331 3R 27067358..27067496 804..666 695 100 Minus
3R 32079331 3R 27067122..27067204 882..800 415 100 Minus
3R 32079331 3R 27066601..27066665 947..883 295 96.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 26809975..26810640 666..1 3330 100 Minus
3R 31820162 3R 26806930..26807284 1295..941 1730 99.1 Minus
3R 31820162 3R 26805901..26806155 1777..1523 1200 98 Minus
3R 31820162 3R 26806634..26806862 1524..1296 1100 98.6 Minus
3R 31820162 3R 26808189..26808327 804..666 695 100 Minus
3R 31820162 3R 26807953..26808035 882..800 415 100 Minus
3R 31820162 3R 26807432..26807496 947..883 295 96.9 Minus
Blast to na_te.dros performed 2019-03-16 10:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 614..677 222..285 121 69.2 Plus

SD20537.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:03:19 Download gff for SD20537.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 22888158..22888367 1525..1734 98 <- Minus
chr3R 22888848..22889076 1296..1524 99 <- Minus
chr3R 22889144..22889498 941..1295 99 <- Minus
chr3R 22889653..22889710 883..940 100 <- Minus
chr3R 22890167..22890244 805..882 100 <- Minus
chr3R 22890403..22890540 667..804 100 <- Minus
chr3R 22892191..22892860 1..666 95   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:09:39 Download gff for SD20537.complete
Subject Subject Range Query Range Percent Splice Strand
spz-RK 1..873 601..1473 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:07:24 Download gff for SD20537.complete
Subject Subject Range Query Range Percent Splice Strand
spz-RK 1..873 601..1473 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:08:47 Download gff for SD20537.complete
Subject Subject Range Query Range Percent Splice Strand
spz-RK 1..873 601..1473 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:57:10 Download gff for SD20537.complete
Subject Subject Range Query Range Percent Splice Strand
spz-RK 1..873 601..1473 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:52:52 Download gff for SD20537.complete
Subject Subject Range Query Range Percent Splice Strand
spz-RK 1..873 601..1473 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:27:20 Download gff for SD20537.complete
Subject Subject Range Query Range Percent Splice Strand
spz-RK 260..1993 1..1734 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:07:24 Download gff for SD20537.complete
Subject Subject Range Query Range Percent Splice Strand
spz-RK 260..1993 1..1734 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:08:47 Download gff for SD20537.complete
Subject Subject Range Query Range Percent Splice Strand
spz-RK 262..1995 1..1734 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:57:10 Download gff for SD20537.complete
Subject Subject Range Query Range Percent Splice Strand
spz-RK 260..1993 1..1734 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:52:52 Download gff for SD20537.complete
Subject Subject Range Query Range Percent Splice Strand
spz-RK 262..1995 1..1734 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:03:19 Download gff for SD20537.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27065113..27065322 1525..1734 99 <- Minus
3R 27065803..27066031 1296..1524 98 <- Minus
3R 27066099..27066453 941..1295 99 <- Minus
3R 27066608..27066665 883..940 100 <- Minus
3R 27067122..27067199 805..882 100 <- Minus
3R 27067358..27067495 667..804 100 <- Minus
3R 27069144..27069809 1..666 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:03:19 Download gff for SD20537.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27065113..27065322 1525..1734 99 <- Minus
3R 27065803..27066031 1296..1524 98 <- Minus
3R 27066099..27066453 941..1295 99 <- Minus
3R 27066608..27066665 883..940 100 <- Minus
3R 27067122..27067199 805..882 100 <- Minus
3R 27067358..27067495 667..804 100 <- Minus
3R 27069144..27069809 1..666 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:03:19 Download gff for SD20537.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27065113..27065322 1525..1734 99 <- Minus
3R 27065803..27066031 1296..1524 98 <- Minus
3R 27066099..27066453 941..1295 99 <- Minus
3R 27066608..27066665 883..940 100 <- Minus
3R 27067122..27067199 805..882 100 <- Minus
3R 27067358..27067495 667..804 100 <- Minus
3R 27069144..27069809 1..666 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:08:47 Download gff for SD20537.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22890835..22891044 1525..1734 99 <- Minus
arm_3R 22891525..22891753 1296..1524 98 <- Minus
arm_3R 22891821..22892175 941..1295 99 <- Minus
arm_3R 22892330..22892387 883..940 100 <- Minus
arm_3R 22892844..22892921 805..882 100 <- Minus
arm_3R 22893080..22893217 667..804 100 <- Minus
arm_3R 22894866..22895531 1..666 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:29:42 Download gff for SD20537.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26805944..26806153 1525..1734 99 <- Minus
3R 26806634..26806862 1296..1524 98 <- Minus
3R 26806930..26807284 941..1295 99 <- Minus
3R 26807439..26807496 883..940 100 <- Minus
3R 26807953..26808030 805..882 100 <- Minus
3R 26808189..26808326 667..804 100 <- Minus
3R 26809975..26810640 1..666 100   Minus

SD20537.pep Sequence

Translation from 600 to 1472

> SD20537.pep
MMTPMWISLFKVLLLLFAFFATIVYINIELTKRHEAEVRAEKTVADYKAL
LATINNGGPGKSASNHLQYEAKEYERIIKELFTITNDEGVVLFNRTDTEV
QSEQPIPPRHPSDTKYRPPQSPARPLRNDTKEHNPCAKDESQHLRNFCTN
VDDYPDLSGLTHKLKNNFAKFFSNDLQPTDVSSRVGGSDERFLCRSIRKL
VYPKKGLRADDTWQLIVNNDEYKQAIQIEECEGADQPCDFAANFPQSYNP
ICKQHYTQQTLASIKSDGELDVVQNSFKIPSCCKCALKTG*

SD20537.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22956-PA 363 GF22956-PA 1..360 1..288 577 38.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12145-PA 351 GG12145-PA 1..350 1..289 1169 65.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18954-PA 369 GH18954-PA 1..361 2..289 401 33.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
spz-PK 290 CG6134-PK 1..290 1..290 1546 100 Plus
spz-PD 273 CG6134-PD 1..273 1..290 1357 88.3 Plus
spz-PJ 244 CG6134-PJ 1..244 1..290 1258 84.1 Plus
spz-PC 253 CG6134-PC 1..253 1..290 1238 81.6 Plus
spz-PL 270 CG6134-PL 1..270 1..290 1150 78.1 Plus
spz-PB 300 CG6134-PB 1..300 1..290 1132 74.8 Plus
spz-PA 326 CG6134-PA 1..326 1..290 1122 72.2 Plus
spz-PI 227 CG6134-PI 23..227 95..290 1051 95.6 Plus
NT1-PD 886 CG42576-PD 335..595 55..285 161 24 Plus
NT1-PH 1042 CG42576-PH 335..595 55..285 161 24 Plus
NT1-PG 1042 CG42576-PG 335..595 55..285 161 24 Plus
NT1-PF 1042 CG42576-PF 335..595 55..285 161 24 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23281-PA 359 GI23281-PA 180..351 112..289 405 47.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23619-PA 403 GL23619-PA 192..402 91..289 517 49.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19380-PM 283 GA19380-PM 1..282 2..289 582 45 Plus
Dpse\GA19380-PJ 248 GA19380-PJ 1..247 2..289 570 41.3 Plus
Dpse\GA19380-PF 262 GA19380-PF 1..261 2..289 558 45 Plus
Dpse\GA19380-PC 255 GA19380-PC 1..254 2..289 553 40.1 Plus
Dpse\GA19380-PD 305 GA19380-PD 1..304 2..289 543 39.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10138-PA 316 GM10138-PA 1..316 2..290 1070 63.7 Plus
Dsec\GM13652-PA 169 GM13652-PA 1..169 122..290 872 94.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\spz-PA 350 GD18098-PA 1..350 2..290 1250 72.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:58:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24139-PA 367 GJ24139-PA 186..359 112..289 406 48.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12039-PA 389 GK12039-PA 231..382 108..288 332 42.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\spz-PA 313 GE10592-PA 1..311 2..288 614 45.5 Plus

SD20537.hyp Sequence

Translation from 600 to 1472

> SD20537.hyp
MMTPMWISLFKVLLLLFAFFATIVYINIELTKRHEAEVRAEKTVADYKAL
LATINNGGPGKSASNHLQYEAKEYERIIKELFTITNDEGVVLFNRTDTEV
QSEQPIPPRHPSDTKYRPPQSPARPLRNDTKEHNPCAKDESQHLRNFCTN
VDDYPDLSGLTHKLKNNFAKFFSNDLQPTDVSSRVGGSDERFLCRSIRKL
VYPKKGLRADDTWQLIVNNDEYKQAIQIEECEGADQPCDFAANFPQSYNP
ICKQHYTQQTLASIKSDGELDVVQNSFKIPSCCKCALKTG*

SD20537.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
spz-PK 290 CG6134-PK 1..290 1..290 1546 100 Plus
spz-PD 273 CG6134-PD 1..273 1..290 1357 88.3 Plus
spz-PJ 244 CG6134-PJ 1..244 1..290 1258 84.1 Plus
spz-PC 253 CG6134-PC 1..253 1..290 1238 81.6 Plus
spz-PL 270 CG6134-PL 1..270 1..290 1150 78.1 Plus