Clone SD20656 Report

Search the DGRC for SD20656

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:206
Well:56
Vector:pOT2
Associated Gene/TranscriptCG34334-RA
Protein status:SD20656.pep: gold
Sequenced Size:3257

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG34334 2008-04-29 Release 5.5 accounting
CG34334 2008-08-15 Release 5.9 accounting
CG34334 2008-12-18 5.12 accounting

Clone Sequence Records

SD20656.complete Sequence

3257 bp (3257 high quality bases) assembled on 2006-08-24

GenBank Submission: BT028873

> SD20656.complete
TTTTTTTTTTTTTTTTTTTTTATTTGGTTGATTTACGGATTTATTAACTG
AAGTTGATGGATATTGGTTGCTGTACGCTATCGCTATGGTAGACTACTTG
CCGGCCGCCGTGGCCAGGGGATTCCTTAGGACCAGGATGACAGAATCGCC
TCGCAGGAACATCTTCGATATGAACCGATCCTTGTTCACGGGCTTCACCT
TCTTCTTGCCCTTACCGGTCCGCGGCAGCTCCGTCCACATCTCCTTCACG
TTTTCCAGTACCATGTTGCAGTGCCGATCGAAGGCCTTTACCCTGCCCAG
CAGCTTCTTGTTGTTGCGGCAGTTGATGAGCACCTGGGTGTTGTTCTTCA
CGGACTGCGTGAGCACGGACAGCGGGCCGGTGTTAAACTCCTCCTCCTCC
TGCCGCGCCAGCTCCTCCGGGGTCAGCTCCGATTTCGGTTTCACAAGAGC
CCTGCAGAGAACACAGTACATTAGTATTTCACCCACAACTCGAGCGTGGT
GCTAACAATGCAAAATGCCGGCGCACATGCCGCTGCCAGTTACGCCATTT
CCGATGGTTTGTCCCATCTGCCCCGGGATACTTACATAGCGGATTATAAC
TATGGCTTGTTAAATGATGTTGATAGTCTTCTTGTTTCGCTTCTCAGTTG
GTTTTCTGCGTTTATTGTTGGCAAAAGTATTCAGCGCGGCTTCGTTTTTT
CTCGTGCCGAATTCGGCACGAGCCACAAAGCAAAAAAGTTGTTATCTATC
ATTGAGTGGCCTTTGCTTGGTCAGCTTTTATTTTTATGACAGTTGTCAGA
CCAAGTTTTTACACGCCATTACATTTTCATAAGGCAGCCGTTCCCAACGT
TGAAAGTGAAATCTTGTGAAAATGACCAAGGTATCAGGGACGAAGGCAAA
AGACGATGGCGAGCCAGCCACTAAGCGCGAACGCAAGGAGATGCATTCGC
ACAAGAAAGATCGCAGGGAGCGATTGGAACGCATGGAGCGCATGGACCGC
AGGGACCGCAGAGACCGCAGAGAACGCAGGGACCGCAAGGACCGCAAGGA
CCGCAAGGACCGCAAAGAGCCAGCCAGAGGCCCCTCCTCCCGGATGAGGA
ACATCTCACCAATTCACTCGAATGCTTCGGAGAGCACTGAAGCAGACTGC
AGCGACTCCAGCTACTCGGACTCGAGCTACAGCACCTCTGGATCGTCCAG
CTGCACAAGCTTTTTGAGCTCCACCAGCAGCAGCTACTCGTCGAGCGACA
GCGAGCCAGAGCCAGAAGGATCCGTCAAAAAGTTTGAGCGCACCAAGCAC
TCGTGTTGCCATTACCGACACCATCGTCGCCATAGGCGCCACCAAAACCC
TCGTCATTCGCACCGTCGCCGGCACGTCACCCGTTGCCATCACTCGAATC
ACGGACGCTTTTCCAAGCGTTTGGCTAAAAAGAGTCGTCGTGGCATATCC
GCCGCCAAGGGAGCTATCACGGTTAAGGAGGAGGTTGTCGAAAAAATTTC
TCCTGCTTCAGCCCCTGGGGTCATTCAGATACCGGCACCCATTCCGCTGC
CCGTGCCGGCACCCATTCCGGCTGTCCTGTCTGTTTCGGAGGCACAACCG
CGTTCCCACTCCCGTTCGCAATCGCACTCCCATCTCCATAGCCATTCCAG
CTCCCATAACAATCCCCACCCGCAACCCGTTCCGGCCCCTGTTCCGGTAC
CAATTCCTGCTCCGATCGCCATGCCAACTCCTATGAGGGAGCCAAGCAGC
GTGGTATTGGACCGCAAGTCTCGTAGACGCAGCTCCACCTCGCAGAACAT
CGCCTCGGCCGCCAGCAGTTCTATCGGCACCAACCAAGCCATCATCCAGT
CTAGCACTATAACCATTACAAAGACGATTGCCAACGCCACTGGTATGGCC
GAAACCAATTCAAGTGGCGGCGCTAGCATCTCCAGCACAAAAAATAAGGG
GGACAGCAGTACCGGCCAATCTTCAAAGACGGTTGTCACCAATAACGCGG
GCAGCAAGGCGGGTTACCAAGCCCCCAAGACTTCAGTGGCAAGCACATCT
TCGAAAGCGGTGGTCAGGTCTAACGCAAGCGCCAGTTCAGGCCACGGGAA
CCACACCAGTTCCAGCTCGAGTTTCACCCAGCTGCACTCCAGTGCCAGGC
CCTCGACAGCCAAAGATCACGACAAGAGTCCTCAGCAGAACCGCTCAGGC
AGCTCAGGCCCCAAGGGCAAGTCGTCGAAGATCAACGATCCTCCACGTCG
TGGCTCTTCACCGTCTGCTGGTGCAGAACCTACTCGCCAAAAACAAAGCG
TTCAAAATCAAAATGGGCGGAATTGCAGCAGCCAGTGGAACCATCGGCGC
GGTGAAGGGGATGGAGAAGGAGCAGAAGCAAGTGGACGGGGCTACAGAGC
CGTGGGTGAGGTAAACAAAGTGGCCTACAGAAACGGAAAGGACGCCTTCA
AATTTCGCCAACCCGTGCGCAATGTTCGCCTGCACATTAAGGGATTGACG
CGTCAGGTGACCAAGGAGCACATAACCGAGATATTTGGTCACTTCGGCGC
CCTGACGGCAGTCGACTTTCCAATGGACCGTTTCCAAGGGCGCCAGGGAC
GCGGATACGCCTTTGTGGAGTACTCACGTCCAGAGGACTGCGCCAGTGCC
ATCAAGCATATGAACGGCGGGCAGATCGATGGGAAGCTGATCAGGGTGTC
CGCCTTTCAGGAAAGCATGCTAAAGGCGCCGTGGCGTCAATACCGACGTT
ACTCGCCAGTCAACCGGCGCCAGAGCCAGCGTACGTTGTCCCGCTCGGGC
TCGTCGTCACGCTCTCGATCGCCGTCCCGCTCTGCGTCCGGCTCGGAATA
CGGGTCGCGGTCCTCCCACTCTCGCGTCCGCTCTATGTCGGGATCGCGCT
ATTCTCGGCGCAACCGTTCGCAATCGTGCTCCTACACTCGCTCATCGCCG
CGCTACGGGCATTACCATCGCCCTAGACGCGATTCGCGTTCGCCCTAGAT
AGGCGGACCTGTCTAATGTTGCAAAAGGAAGGCGAGATTAAGCCAGACAG
GATTTTCAGGACTCTGCCAGATGCCTATTTTATTCCATTCCAACTTCAAA
TACAAATGTAGACTTGATGGACATCGTGCGTTTTAAAAGTTACTTATTAA
TACCAGTCTAATTTAAAAACATTGTTGGGCTTAAAATAAATAAAAATAAA
AATCCATGCTCCGCACAAAAAAGAATTGTGAGGTATATCAAAAAAAAAAA
AAAAAAA

SD20656.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG34334-RA 2556 CG34334-RA 184..2556 851..3223 11865 100 Plus
snRNP2-RA 907 snRNP2-RA 268..699 451..20 2160 100 Minus
snRNP2.a 614 snRNP2.a 268..503 451..216 1180 100 Minus
CG34334-RA 2556 CG34334-RA 1..126 725..850 630 100 Plus
snRNP2-RA 907 snRNP2-RA 153..268 700..585 580 100 Minus
snRNP2.a 614 snRNP2.a 153..268 700..585 580 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:05:45
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 22268973..22271361 851..3239 11885 99.8 Plus
chr3R 27901430 chr3R 2170882..2171562 20..700 3405 100 Plus
chrX 22417052 chrX 22268788..22268915 723..850 625 99.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:57:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 22872995..22875389 851..3245 11960 100 Plus
3R 32079331 3R 6345205..6345885 20..700 3405 100 Plus
X 23542271 X 22872810..22872937 723..850 640 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:09:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 22858087..22860481 851..3245 11960 99.9 Plus
3R 31820162 3R 6086036..6086716 20..700 3405 100 Plus
X 23527363 X 22857902..22858029 723..850 640 100 Plus
Blast to na_te.dros performed 2019-03-15 20:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\worf 4174 Dmir\worf WORF 4174bp Derived from AY144572. 803..859 1676..1732 132 70.2 Plus

SD20656.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:06:50 Download gff for SD20656.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 22269187..22271361 1065..3239 98   Plus
chrX 22268783..22268915 715..850 97 -> Plus
chrX 22268973..22269116 851..994 100 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:09:41 Download gff for SD20656.complete
Subject Subject Range Query Range Percent Splice Strand
CG34334-RA 1..2127 872..2998 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:28:07 Download gff for SD20656.complete
Subject Subject Range Query Range Percent Splice Strand
CG34334-RA 1..2127 872..2998 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:19:28 Download gff for SD20656.complete
Subject Subject Range Query Range Percent Splice Strand
CG34334-RA 1..2127 872..2998 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:51:50 Download gff for SD20656.complete
Subject Subject Range Query Range Percent Splice Strand
CG34334-RA 1..2127 872..2998 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:15:23 Download gff for SD20656.complete
Subject Subject Range Query Range Percent Splice Strand
CG34334-RA 1..2127 872..2998 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:59:16 Download gff for SD20656.complete
Subject Subject Range Query Range Percent Splice Strand
CG34334-RA 1..126 725..850 100 -> Plus
CG34334-RA 184..2556 851..3223 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:28:07 Download gff for SD20656.complete
Subject Subject Range Query Range Percent Splice Strand
CG34334-RA 1..126 725..850 100 -> Plus
CG34334-RA 184..2556 851..3223 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:19:28 Download gff for SD20656.complete
Subject Subject Range Query Range Percent Splice Strand
CG34334-RA 1..126 725..850 100 -> Plus
CG34334-RA 184..2556 851..3223 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:51:51 Download gff for SD20656.complete
Subject Subject Range Query Range Percent Splice Strand
CG34334-RA 184..2556 851..3223 100   Plus
CG34334-RA 1..126 725..850 100 -> Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:15:23 Download gff for SD20656.complete
Subject Subject Range Query Range Percent Splice Strand
CG34334-RA 1..126 725..850 100 -> Plus
CG34334-RA 184..2556 851..3223 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:06:50 Download gff for SD20656.complete
Subject Subject Range Query Range Percent Splice Strand
X 22872995..22875383 851..3239 100   Plus
X 22872805..22872937 715..850 97 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:06:50 Download gff for SD20656.complete
Subject Subject Range Query Range Percent Splice Strand
X 22872995..22875383 851..3239 100   Plus
X 22872805..22872937 715..850 97 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:06:50 Download gff for SD20656.complete
Subject Subject Range Query Range Percent Splice Strand
X 22872995..22875383 851..3239 100   Plus
X 22872805..22872937 715..850 97 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:19:28 Download gff for SD20656.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 22274641..22274773 715..850 97 -> Plus
arm_X 22274831..22277219 851..3239 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:54:28 Download gff for SD20656.complete
Subject Subject Range Query Range Percent Splice Strand
X 22857897..22858029 715..850 97 -> Plus
X 22858087..22860475 851..3239 100   Plus

SD20656.pep Sequence

Translation from 871 to 2997

> SD20656.pep
MTKVSGTKAKDDGEPATKRERKEMHSHKKDRRERLERMERMDRRDRRDRR
ERRDRKDRKDRKDRKEPARGPSSRMRNISPIHSNASESTEADCSDSSYSD
SSYSTSGSSSCTSFLSSTSSSYSSSDSEPEPEGSVKKFERTKHSCCHYRH
HRRHRRHQNPRHSHRRRHVTRCHHSNHGRFSKRLAKKSRRGISAAKGAIT
VKEEVVEKISPASAPGVIQIPAPIPLPVPAPIPAVLSVSEAQPRSHSRSQ
SHSHLHSHSSSHNNPHPQPVPAPVPVPIPAPIAMPTPMREPSSVVLDRKS
RRRSSTSQNIASAASSSIGTNQAIIQSSTITITKTIANATGMAETNSSGG
ASISSTKNKGDSSTGQSSKTVVTNNAGSKAGYQAPKTSVASTSSKAVVRS
NASASSGHGNHTSSSSSFTQLHSSARPSTAKDHDKSPQQNRSGSSGPKGK
SSKINDPPRRGSSPSAGAEPTRQKQSVQNQNGRNCSSQWNHRRGEGDGEG
AEASGRGYRAVGEVNKVAYRNGKDAFKFRQPVRNVRLHIKGLTRQVTKEH
ITEIFGHFGALTAVDFPMDRFQGRQGRGYAFVEYSRPEDCASAIKHMNGG
QIDGKLIRVSAFQESMLKAPWRQYRRYSPVNRRQSQRTLSRSGSSSRSRS
PSRSASGSEYGSRSSHSRVRSMSGSRYSRRNRSQSCSYTRSSPRYGHYHR
PRRDSRSP*

SD20656.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 12:46:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22015-PA 2159 GF22015-PA 543..626 529..612 413 85.7 Plus
Dana\GF18475-PA 386 GF18475-PA 234..309 535..610 245 57.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 12:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19755-PA 749 GG19755-PA 1..749 1..708 1564 67.2 Plus
Dere\GG16863-PA 377 GG16863-PA 221..296 535..610 261 59.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 12:46:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11866-PA 508 GH11866-PA 415..505 533..622 288 56 Plus
Dgri\GH18277-PA 397 GH18277-PA 246..341 535..633 262 51.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG34334-PA 708 CG34334-PA 1..708 1..708 3668 100 Plus
RnpS1-PA 374 CG16788-PA 1..374 342..679 365 30.6 Plus
Mur89F-PC 2158 CG4090-PC 286..767 72..534 185 21.8 Plus
Mur89F-PB 2159 CG4090-PB 286..767 72..534 185 21.8 Plus
SC35-PD 195 CG5442-PD 23..176 535..696 155 32.5 Plus
SC35-PC 195 CG5442-PC 23..176 535..696 155 32.5 Plus
SC35-PB 195 CG5442-PB 23..176 535..696 155 32.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 12:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15652-PA 520 GI15652-PA 413..511 532..628 306 56.4 Plus
Dmoj\GI24086-PA 382 GI24086-PA 227..322 535..633 265 51.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 12:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22325-PA 378 GL22325-PA 226..301 535..610 250 56.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 12:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25275-PA 897 GA25275-PA 753..850 531..630 367 64 Plus
Dpse\GA14150-PA 378 GA14150-PA 226..301 535..610 250 56.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 12:46:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10061-PA 707 GM10061-PA 1..707 1..708 2151 86.8 Plus
Dsec\GM23813-PA 375 GM23813-PA 217..294 533..610 275 60.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 12:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17555-PA 631 GD17555-PA 140..631 216..708 1670 87.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 12:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19235-PA 583 GJ19235-PA 476..580 532..633 358 62.6 Plus
Dvir\GJ10904-PA 388 GJ10904-PA 235..330 535..633 265 51.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 12:46:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19840-PA 454 GK19840-PA 306..406 529..629 463 75.2 Plus
Dwil\GK11259-PA 389 GK11259-PA 237..312 535..610 259 59.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 12:46:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17950-PA 709 GE17950-PA 1..709 1..708 1599 71.5 Plus
Dyak\GE25959-PA 375 GE25959-PA 221..296 535..610 262 59.2 Plus

SD20656.hyp Sequence

Translation from 871 to 2997

> SD20656.hyp
MTKVSGTKAKDDGEPATKRERKEMHSHKKDRRERLERMERMDRRDRRDRR
ERRDRKDRKDRKDRKEPARGPSSRMRNISPIHSNASESTEADCSDSSYSD
SSYSTSGSSSCTSFLSSTSSSYSSSDSEPEPEGSVKKFERTKHSCCHYRH
HRRHRRHQNPRHSHRRRHVTRCHHSNHGRFSKRLAKKSRRGISAAKGAIT
VKEEVVEKISPASAPGVIQIPAPIPLPVPAPIPAVLSVSEAQPRSHSRSQ
SHSHLHSHSSSHNNPHPQPVPAPVPVPIPAPIAMPTPMREPSSVVLDRKS
RRRSSTSQNIASAASSSIGTNQAIIQSSTITITKTIANATGMAETNSSGG
ASISSTKNKGDSSTGQSSKTVVTNNAGSKAGYQAPKTSVASTSSKAVVRS
NASASSGHGNHTSSSSSFTQLHSSARPSTAKDHDKSPQQNRSGSSGPKGK
SSKINDPPRRGSSPSAGAEPTRQKQSVQNQNGRNCSSQWNHRRGEGDGEG
AEASGRGYRAVGEVNKVAYRNGKDAFKFRQPVRNVRLHIKGLTRQVTKEH
ITEIFGHFGALTAVDFPMDRFQGRQGRGYAFVEYSRPEDCASAIKHMNGG
QIDGKLIRVSAFQESMLKAPWRQYRRYSPVNRRQSQRTLSRSGSSSRSRS
PSRSASGSEYGSRSSHSRVRSMSGSRYSRRNRSQSCSYTRSSPRYGHYHR
PRRDSRSP*

SD20656.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG34334-PA 708 CG34334-PA 1..708 1..708 3668 100 Plus
RnpS1-PA 374 CG16788-PA 1..374 342..679 365 30.6 Plus
Mur89F-PC 2158 CG4090-PC 286..767 72..534 185 21.8 Plus
Mur89F-PB 2159 CG4090-PB 286..767 72..534 185 21.8 Plus
SC35-PD 195 CG5442-PD 23..176 535..696 155 32.5 Plus