Clone SD20854 Report

Search the DGRC for SD20854

Clone and Library Details

Library:SD
Tissue Source:Drosophila melanogaster Schneider L2 cell culture
Created by:Ling Hong
Date Registered:1999-02-25
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:208
Well:54
Vector:pOT2
Associated Gene/TranscriptCG3706-RA
Protein status:SD20854.pep: gold
Preliminary Size:1448
Sequenced Size:1762

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3706 2002-01-01 Sim4 clustering to Release 2
CG3706 2002-05-18 Blastp of sequenced clone
CG3706 2003-01-01 Sim4 clustering to Release 3
CG3706 2008-04-29 Release 5.5 accounting
CG3706 2008-08-15 Release 5.9 accounting
CG3706 2008-12-18 5.12 accounting

Clone Sequence Records

SD20854.complete Sequence

1762 bp (1762 high quality bases) assembled on 2002-05-18

GenBank Submission: AY119247

> SD20854.complete
CGCGAGCGCAGACAGATCCAGATTTAGCGAGCTAGTCATGCATCGCCGCA
AAGCCCGTCGATTCCGACCCGATAAGCCCAGTCCGAGGAGGTGGGGCCGA
AAAGTGGGTTTAGACGGTGGCGGCTTATCGAGTGGCGATAAGCGGGACAC
AAGACCCACTTCCCCACACATTGTCCAGTGCAGGCCTCGCAGTCGCGTCC
AATTGGCCAAGCCGTTCGGTAACGGAGCATTTTTGACGAGGATCGACATT
CCGCGGAACTCCAAAGAGGATTTAATTTTGAACAGATTTTGAGCATCTTG
GGACACAACATGATCGCAGCGCTCGGGCTGATCTTCGGCATTCTAACGGC
CTTGGTGGTCGTGGCACTTAAGCTACTGGGCCTGAAGCCGCCACTAATCT
TCGGCAAGTACCCACTGAAAGGCATCTTTTACCGGGTGAAGTTCTGGATC
GCCCTGCTTGTCCTTCGCCGCCTGAGGTACCGCATCTACCGTCGGAACGA
GGAGCTGCTCGGCTCCGAGGAGCACCTGGCCAAGGTCGACAGGCCGCAGC
AGCTCAGCAACGACCCGAAGAGCTATGACGTGGTCAGCTTCATGGCGGCC
AACAAGGAGGGCCAGAAACTAATGGTCACCTTGGAGCGAAGGAGGCGCGG
AGTCCTCAAGGCGGCACTGTACCTGTGGCTTCCCGAAAGCGGCCTGTTCA
GTTCGCCGAATCTGCCCGATATGGTATACTTCACCACCGCGGATGGAGCG
GAGAGCAACGCGTTCCAGGGTGGAGGCTTCCACGTCTACCAGGAGGCATC
TATGCGTGTGTGGCGGCTCAAGTACTCCGGACTGCTGAAAACTCAAGGGC
CGGACGTGCAGGACGTAGCCGTGGACTTGGACCTCCGTTTCGAAAGCTCC
TCCGCTGAGCACTTCGACTACAACAGAGATCTGAGCAGCGCCCTGATAGC
CGACTCCATAGCCAGAGAGGCCTGGAACGAAAAGTTCTACAGCCTGCTGC
GCAGCGTCAACCACATCGTAGAGAAGCGCACCCACTACGAACAGAACGGA
GAACTGGCCGGCCAGGTCACGCTCGATGGCAAGGAGCTGGCGCTGAAAAT
GGTGGGCTTCCGGGACCACAGCTTCGGCACCGAGCGCTGCCTAAGCTCCA
TCAACCGGTACGTGTACTTTGCCCTCTTTATGGACGATGGCAGCAGCATG
GTGGTGGGCAGCCTCAGTCAGCCGTCCTTCTTCCTGTCCTCCCTGAAGGT
GGGCTACGTGTGCAGCCCCGAGCGGCAGTATCAGCCGCTGACCGGGAGCA
ACTTCGAGCTGTACTCGTACGGCGAAAAGGGAACGCCGCCGCAGCACCAG
AATTTCATTGTGCGCACCGAGGAGCGGGAGTACCTCGTGCAAATCCAGGT
GGAGGCCTCCGCGCTGCGCTACGTCGGCGGCGACTGGGAGTCTAAGGTGT
TCAACCAGTTTGTGGCCTGCACGGTCAACGGAGTTCCCGGCCAGGGCCAC
GCCGAGTTCCTGTACCGCCACAAGGGCGGCAGGCCGGAGGATATATCGTC
CGGGGACCCCGGCTGGTACCAGGACATCAAGCGCTTCGAGAGAAGCCTCT
CGTTGCTGGAAGAGGAGGGCCAGGACGAAGACTTCATCTTCTAGGACGCC
GACGAATTGTTTTTGTTTTCAGTTTAAGATAGCATGTAAAAGTATGGGGG
AGACCCATCCTATCAAAATAAAGAGATTTTGTTTGAATGACAAAAAAAAA
AAAAAAAAAAAA

SD20854.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3706-RA 1741 CG3706-RA 1..1741 1..1741 8705 100 Plus
nc_21259.b 2345 nc_21259.b 1..206 206..1 1030 100 Minus
CG32815.a 2430 CG32815.a 1..206 206..1 1030 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 824917..826657 1741..1 8690 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:57:20 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:59:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 930930..932671 1742..1 8710 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 939028..940769 1742..1 8710 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:59:40 has no hits.

SD20854.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:00:39 Download gff for SD20854.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 824917..826657 1..1741 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 21:09:44 Download gff for SD20854.complete
Subject Subject Range Query Range Percent Splice Strand
CG3706-RA 1..1335 310..1644 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:40:13 Download gff for SD20854.complete
Subject Subject Range Query Range Percent Splice Strand
CG3706-RA 1..1335 310..1644 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:44:05 Download gff for SD20854.complete
Subject Subject Range Query Range Percent Splice Strand
CG3706-RA 1..1335 310..1644 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:31:58 Download gff for SD20854.complete
Subject Subject Range Query Range Percent Splice Strand
CG3706-RA 1..1335 310..1644 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:02:32 Download gff for SD20854.complete
Subject Subject Range Query Range Percent Splice Strand
CG3706-RA 1..1335 310..1644 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:13:37 Download gff for SD20854.complete
Subject Subject Range Query Range Percent Splice Strand
CG3706-RA 1..1741 1..1741 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:40:12 Download gff for SD20854.complete
Subject Subject Range Query Range Percent Splice Strand
CG3706-RA 1..1741 1..1741 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:05 Download gff for SD20854.complete
Subject Subject Range Query Range Percent Splice Strand
CG3706-RA 1..1545 197..1741 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:31:58 Download gff for SD20854.complete
Subject Subject Range Query Range Percent Splice Strand
CG3706-RA 1..1741 1..1741 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:32 Download gff for SD20854.complete
Subject Subject Range Query Range Percent Splice Strand
CG3706-RA 1..1545 197..1741 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:00:39 Download gff for SD20854.complete
Subject Subject Range Query Range Percent Splice Strand
X 930931..932671 1..1741 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:00:39 Download gff for SD20854.complete
Subject Subject Range Query Range Percent Splice Strand
X 930931..932671 1..1741 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:00:39 Download gff for SD20854.complete
Subject Subject Range Query Range Percent Splice Strand
X 930931..932671 1..1741 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:05 Download gff for SD20854.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 824964..826704 1..1741 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:04:33 Download gff for SD20854.complete
Subject Subject Range Query Range Percent Splice Strand
X 939029..940769 1..1741 100   Minus

SD20854.pep Sequence

Translation from 309 to 1643

> SD20854.pep
MIAALGLIFGILTALVVVALKLLGLKPPLIFGKYPLKGIFYRVKFWIALL
VLRRLRYRIYRRNEELLGSEEHLAKVDRPQQLSNDPKSYDVVSFMAANKE
GQKLMVTLERRRRGVLKAALYLWLPESGLFSSPNLPDMVYFTTADGAESN
AFQGGGFHVYQEASMRVWRLKYSGLLKTQGPDVQDVAVDLDLRFESSSAE
HFDYNRDLSSALIADSIAREAWNEKFYSLLRSVNHIVEKRTHYEQNGELA
GQVTLDGKELALKMVGFRDHSFGTERCLSSINRYVYFALFMDDGSSMVVG
SLSQPSFFLSSLKVGYVCSPERQYQPLTGSNFELYSYGEKGTPPQHQNFI
VRTEEREYLVQIQVEASALRYVGGDWESKVFNQFVACTVNGVPGQGHAEF
LYRHKGGRPEDISSGDPGWYQDIKRFERSLSLLEEEGQDEDFIF*

SD20854.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22050-PA 445 GF22050-PA 3..445 1..444 1917 78.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12731-PA 446 GG12731-PA 3..446 1..444 1993 89.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12415-PA 147 GH12415-PA 1..147 297..444 610 75.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3706-PA 444 CG3706-PA 1..444 1..444 2306 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15000-PA 459 GI15000-PA 8..459 4..444 1540 65.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14211-PA 443 GL14211-PA 3..443 1..444 1795 75.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17628-PA 443 GA17628-PA 3..443 1..444 1796 75.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19011-PA 446 GM19011-PA 3..446 1..444 2076 93.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15358-PA 446 GJ15358-PA 24..446 26..444 1636 72.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10173-PA 444 GK10173-PA 3..444 1..444 1613 72.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16557-PA 448 GE16557-PA 3..448 1..444 1972 89.9 Plus

SD20854.hyp Sequence

Translation from 309 to 1643

> SD20854.hyp
MIAALGLIFGILTALVVVALKLLGLKPPLIFGKYPLKGIFYRVKFWIALL
VLRRLRYRIYRRNEELLGSEEHLAKVDRPQQLSNDPKSYDVVSFMAANKE
GQKLMVTLERRRRGVLKAALYLWLPESGLFSSPNLPDMVYFTTADGAESN
AFQGGGFHVYQEASMRVWRLKYSGLLKTQGPDVQDVAVDLDLRFESSSAE
HFDYNRDLSSALIADSIAREAWNEKFYSLLRSVNHIVEKRTHYEQNGELA
GQVTLDGKELALKMVGFRDHSFGTERCLSSINRYVYFALFMDDGSSMVVG
SLSQPSFFLSSLKVGYVCSPERQYQPLTGSNFELYSYGEKGTPPQHQNFI
VRTEEREYLVQIQVEASALRYVGGDWESKVFNQFVACTVNGVPGQGHAEF
LYRHKGGRPEDISSGDPGWYQDIKRFERSLSLLEEEGQDEDFIF*

SD20854.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3706-PA 444 CG3706-PA 1..444 1..444 2306 100 Plus